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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3348#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1270 fasta sequence
[TATTTTTAATAATATACGAAATCTTTCGATTCTAGACGAATTTAAAACATAGCAAAAAAAGAAAATGTCGGAGACACTTCGAGTACTAGTTACTGGCTCAGCCGGTCAAATCGCCTACTCGCTGCTATACGCGATCGCGAACGGTGATGTGTTCGGAAAGAACCAACCGGTGATCTTGCACCTATTCGATATCTCGCCAATGTTGACGGCGATGGGAGGCGTTAAGCTCGAGCTCGAGGACTGCTCGCTGCCGTTGCTCAAGGACGTCGTGGTCACCGACAAAGAGGAGGTCGCCTTCAAGGACATCGACGTCGCGATCATGGCTGGAGCCATGCCACGTAAAGAGGGTATGGAGCGAAAGGACTTGCTCGCCGCCAACGTTCGCATCTTCAAGGCTCAAGGTGAGGCGCTCGACAAGCACGCCAAGAAGACCGTCAAGGTCGTTGTGGTCGGAAACCCAGCCAACACGAACTGTCTCATCCTCTCCAAGTACGCGCCCTCAATCCCACAAGAGAACTTCTCGTGCTTGACGCGTCTCGATCACAACCGCGCCAAGACCCAAGTCGCGCTCAAGACCCATGTCACCTCGGATAAGGTTAAGAATGTGACCATCTGGGGCAACCACTCGTCGACCCAGTTCCCTGACTTGGCTCACGCTAAGGTCACTTTGCCAGATGGCTCAGTGAAGGGCGCCTATGAGGCCATCAATGACGAGAACTGGATCAAGAACGAGTTCATCCCATGCGTGCAGAAGCGAGGCGCTGCGATCATTGCGGCCCGAAAGCTCTCGTCAGCCATGTCGGCGGCGAAGGCCATCTGCGACCACATGCGAGACTGGTGGCACGGAACTCAAGGAGACGAGTGGGTCTCAATGGGCATTGTCTCTGACGGATCGTACGGAATCGAGAAGGGACTCGTCTACAGCTACCCTGTGCGCATTGCCAACAAGAAGTGGACCATTGTGCAAGGACTCAGCGTCTCTGACTGGGCTCGTGATCTTATGGACAAGACCGCGAAAGAACTCATCGATGAGAGAAATGACGCTCTTGAGGCTACTAGCAAATAGATTGAATATTGACTCAACCAATTGATGATCTCTTTTTTGAATGTTCATCCTTCCTTTTCTAGATCTAGTAGACTTTTTTATTACTATATTGTACTGCCAATTTTATTCGTAAACTTAAAAAAAAACTTTATATTTTAGATTAAATTTTTATTTTAGTTTTTAATTTTTAGTTGTCTTAAAAAGATCCTAGTTTAATAAAACTTG]
[+] EMBL AK110610 [TATTTTTAATAATATACGAAATCTTTCGATTCTAGACGAATTTAAAACATAGCAAAAAAAGAAAATGTCGGAGACACTTCGAGTACTAGTTACTGGCTCAGCCGGTCAAATCGCCTACTCGCTGCTATACGCGATCGCGAACGGTGATGTGTTCGGAAAGAACCAACCGGTGATCTTGCACCTATTCGATATCTCGCCAATGTTGACGGCGATGGGAGGCGTTAAGCTCGAGCTCGAGGACTGCTCGCTGCCGTTGCTCAAGGACGTCGTGGTCACCGACAAAGAGGAGGTCGCCTTCAAGGACATCGACGTCGCGATCATGGCTGGAGCCATGCCACGTAAAGAGGGTATGGAGCGAAAGGACTTGCTCGCCGCCAACGTTCGCATCTTCAAGGCTCAAGGTGAGGCGCTCGACAAGCACGCCAAGAAGACCGTCAAGGTCGTTGTGGTCGGAAACCCAGCCAACACGAACTGTCTCATCCTCTCCAAGTACGCGCCCTCAATCCCACAAGAGAACTTCTCGTGCTTGACGCGTCTCGATCACAACCGCGCCAAGACCCAAGTCGCGCTCAAGACCCATGTCACCTCGGATAAGGTTAAGAATGTGACCATCTGGGGCAACCACTCGTCGACCCAGTTCCCTGACTTGGCTCACGCTAAGGTCACTTTGCCAGATGGCTCAGTGAAGGGCGCCTATGAGGCCATCAATGACGAGAACTGGATCAAGAACGAGTTCATCCCATGCGTGCAGAAGCGAGGCGCTGCGATCATTGCGGCCCGAAAGCTCTCGTCAGCCATGTCGGCGGCGAAGGCCATCTGCGACCACATGCGAGACTGGTGGCACGGAACTCAAGGAGACGAGTGGGTCTCAATGGGCATTGTCTCTGACGGATCGTACGGAATCGAGAAGGGACTCGTCTACAGCTACCCTGTGCGCATTGCCAACAAGAAGTGGACCATTGTGCAAGGACTCAGCGTCTCTGACTGGGCTCGTGATCTTATGGACAAGACCGCGAAAGAACTCATCGATGAGAGAAATGACGCTCTTGAGGCTACTAGCAAATAGATTGAATATTGACTCAACCAATTGATGATCTCTTTTTTGAATGTTCATCCTTCCTTTTCTAGATCTAGTAGACTTTTTTATTACTATATTGTACTGCCAATTTTATTCGTAAACTTAAAAAAAAACTTTATATTTTAGATTAAATTTTTATTTTAGTTTTTAATTTTTAGTTGTCTTAAAAAGATCCTAGTTTAATAAAACTTG]
consensusID : consensus_3348#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1245 fasta sequence
[TTTTAAAAAACAAAGAAGTGTGATTTTATATTTTAGCTAAGCTAAACACAAAAAGAAACAAAAAACTATTTTAAAAAATGTCGGAGCCAATTCGAGTTCTAGTGACTGGTGCAGCTGGTCAAATTGCCTACTCGCTTTTGTACGCGATCGCTAACGGTGACGTGTTCGGCAAGAACCAGCCGATCATTCTCCACATGTTCGACATCACGCCCATGCTCACCGCCATGGGTGGCGTCAAGCTCGAGCTCGAGGACTGCTCGTTGCCGCTCCTCAAGGACGTCGTTGTCAGCGATCAGGACTCGATCGCTTTCAAGGACATCGACGTGGCCATCATGACTGGTGCCATGCCGCGTCGCGAGGGTATGGAGCGCAAGGACTTGCTCTCGGCTAACGTGCGCATCTTCAAGGCCCAGGGTGAGGCGCTCGACAAGCATGCGAGAAAAACGGTGAAAGTACTTGTGGTAGGCAATCCGGCCAACACAAACTGTCTCGTCCTCGCCAAGTACGCGCCATCCATACCGAGCGAGAACTTCTCGTGTCTCACTCGTCTCGATCACAACCGCGCCAAGGCTCAGGTCGCTCTCAAGCTCGGTCTCACGTCCGACAAAGTGAAGAACGTGATCATCTGGGGCAACCACTCGTCGACCCAGTTCCCCGATTTGGCTCACGCTCAAGTCACGTTGAACGACGGCTCGAACAAAGGCGCCTACGAGGCACTCAAGGACGAGAACTGGATCAAGAACGAGTTCATACCGTGCGTGCAGAAGCGAGGCGCGGCCATTATTGCCGCTCGCAAGCTCTCGTCGGCCATGTCGGCTGCCAAGGCGATTTGCGATCACATGCGTGACTGGTGGCACGGAACGAGCGGCGACGAGTGGGTCTCCATGGGCATCATTTCGGACGGCTCGTACGGCATCGAGAAAGGTCTCGTGTACAGCTACCCGGTGCGAATCGTCAACAGGAAGTGGACGATCGTGCAAGGTCTCGCCATCAACGACTGGGCTCGATCGCTCATGGACAAGACTGCTCAAGAGCTCATCGAAGAGAGAAACGACGCTTTCGATGCTACTAAATAGAAATTTTCATTCTATAATTTTTAATTGAACACTAAAAAAAAAGACGAGGCTTCAATTAGATCTCAACTAAAAGCATATACAACAAGTTTTCATTTTTTATTTTTACTTATTTAGATTTGTTTTTGAAAGCATCATTTACATTAGAAAATAATAGGTTTTCTTTTGTGTT]
[+] EMBL AK108921 [TTTTAAAAAACAAAGAAGTGTGATTTTATATTTTAGCTAAGCTAAACACAAAAAGAAACAAAAAACTATTTTAAAAAATGTCGGAGCCAATTCGAGTTCTAGTGACTGGTGCAGCTGGTCAAATTGCCTACTCGCTTTTGTACGCGATCGCTAACGGTGACGTGTTCGGCAAGAACCAGCCGATCATTCTCCACATGTTCGACATCACGCCCATGCTCACCGCCATGGGTGGCGTCAAGCTCGAGCTCGAGGACTGCTCGTTGCCGCTCCTCAAGGACGTCGTTGTCAGCGATCAGGACTCGATCGCTTTCAAGGACATCGACGTGGCCATCATGACTGGTGCCATGCCGCGTCGCGAGGGTATGGAGCGCAAGGACTTGCTCTCGGCTAACGTGCGCATCTTCAAGGCCCAGGGTGAGGCGCTCGACAAGCATGCGAGAAAAACGGTGAAAGTACTTGTGGTAGGCAATCCGGCCAACACAAACTGTCTCGTCCTCGCCAAGTACGCGCCATCCATACCGAGCGAGAACTTCTCGTGTCTCACTCGTCTCGATCACAACCGCGCCAAGGCTCAGGTCGCTCTCAAGCTCGGTCTCACGTCCGACAAAGTGAAGAACGTGATCATCTGGGGCAACCACTCGTCGACCCAGTTCCCCGATTTGGCTCACGCTCAAGTCACGTTGAACGACGGCTCGAACAAAGGCGCCTACGAGGCACTCAAGGACGAGAACTGGATCAAGAACGAGTTCATACCGTGCGTGCAGAAGCGAGGCGCGGCCATTATTGCCGCTCGCAAGCTCTCGTCGGCCATGTCGGCTGCCAAGGCGATTTGCGATCACATGCGTGACTGGTGGCACGGAACGAGCGGCGACGAGTGGGTCTCCATGGGCATCATTTCGGACGGCTCGTACGGCATCGAGAAAGGTCTCGTGTACAGCTACCCGGTGCGAATCGTCAACAGGAAGTGGACGATCGTGCAAGGTCTCGCCATCAACGACTGGGCTCGATCGCTCATGGACAAGACTGCTCAAGAGCTCATCGAAGAGAGAAACGACGCTTTCGATGCTACTAAATAGAAATTTTCATTCTATAATTTTTAATTGAACACTAAAAAAAAAGACGAGGCTTCAATTAGATCTCAACTAAAAGCATATACAACAAGTTTTCATTTTTTATTTTTACTTATTTAGATTTGTTTTTGAAAGCATCATTTACATTAGAAAATAATAGGTTTTCTTTTGTGTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3348#0 TATTTTTAATAATATACGAAAT----CTTTCGATTCTAGACGAATTTAAAACATAG---- 52
consensus_3348#1 ---TTTTAAAAAACAAAGAAGTGTGATTTTATATTTTAGCTAAGCTAAACACAAAAAGAA 57
****** ** * *** * *** *** *** * * ** *** *
consensus_3348#0 -CAAAAAA-------AGAAAATGTCGGAGACACTTCGAGTACTAGTTACTGGCTCAGCCG 104
consensus_3348#1 ACAAAAAACTATTTTAAAAAATGTCGGAGCCAATTCGAGTTCTAGTGACTGGTGCAGCTG 117
******* * ************ ** ******* ***** ***** **** *
consensus_3348#0 GTCAAATCGCCTACTCGCTGCTATACGCGATCGCGAACGGTGATGTGTTCGGAAAGAACC 164
consensus_3348#1 GTCAAATTGCCTACTCGCTTTTGTACGCGATCGCTAACGGTGACGTGTTCGGCAAGAACC 177
******* *********** * *********** ******** ******** *******
consensus_3348#0 AACCGGTGATCTTGCACCTATTCGATATCTCGCCAATGTTGACGGCGATGGGAGGCGTTA 224
consensus_3348#1 AGCCGATCATTCTCCACATGTTCGACATCACGCCCATGCTCACCGCCATGGGTGGCGTCA 237
* *** * ** * *** * ***** *** **** *** * ** ** ***** ***** *
consensus_3348#0 AGCTCGAGCTCGAGGACTGCTCGCTGCCGTTGCTCAAGGACGTCGTGGTCACCGACAAAG 284
consensus_3348#1 AGCTCGAGCTCGAGGACTGCTCGTTGCCGCTCCTCAAGGACGTCGTTGTCAGCGATCAGG 297
*********************** ***** * ************** **** *** * *
consensus_3348#0 AGGAGGTCGCCTTCAAGGACATCGACGTCGCGATCATGGCTGGAGCCATGCCACGTAAAG 344
consensus_3348#1 ACTCGATCGCTTTCAAGGACATCGACGTGGCCATCATGACTGGTGCCATGCCGCGTCGCG 357
* * **** ***************** ** ****** **** ******** *** *
consensus_3348#0 AGGGTATGGAGCGAAAGGACTTGCTCGCCGCCAACGTTCGCATCTTCAAGGCTCAAGGTG 404
consensus_3348#1 AGGGTATGGAGCGCAAGGACTTGCTCTCGGCTAACGTGCGCATCTTCAAGGCCCAGGGTG 417
************* ************ * ** ***** ************** ** ****
consensus_3348#0 AGGCGCTCGACAAGCACGCCAAGAAGACCGTCAAGGTCGTTGTGGTCGGAAACCCAGCCA 464
consensus_3348#1 AGGCGCTCGACAAGCATGCGAGAAAAACGGTGAAAGTACTTGTGGTAGGCAATCCGGCCA 477
**************** ** * ** ** ** ** ** ******* ** ** ** ****
consensus_3348#0 ACACGAACTGTCTCATCCTCTCCAAGTACGCGCCCTCAATCCCACAAGAGAACTTCTCGT 524
consensus_3348#1 ACACAAACTGTCTCGTCCTCGCCAAGTACGCGCCATCCATACCGAGCGAGAACTTCTCGT 537
**** ********* ***** ************* ** ** ** *************
consensus_3348#0 GCTTGACGCGTCTCGATCACAACCGCGCCAAGACCCAAGTCGCGCTCAAGACCCATGTCA 584
consensus_3348#1 GTCTCACTCGTCTCGATCACAACCGCGCCAAGGCTCAGGTCGCTCTCAAGCTCGGTCTCA 597
* * ** ************************ * ** ***** ****** * * ***
consensus_3348#0 CCTCGGATAAGGTTAAGAATGTGACCATCTGGGGCAACCACTCGTCGACCCAGTTCCCTG 644
consensus_3348#1 CGTCCGACAAAGTGAAGAACGTGATCATCTGGGGCAACCACTCGTCGACCCAGTTCCCCG 657
* ** ** ** ** ***** **** ********************************* *
consensus_3348#0 ACTTGGCTCACGCTAAGGTCACTTTGCCAGATGGCTCAGTGAAGGGCGCCTATGAGGCCA 704
consensus_3348#1 ATTTGGCTCACGCTCAAGTCACGTTGAACGACGGCTCGAACAAAGGCGCCTACGAGGCAC 717
* ************ * ***** *** ** ***** ** ******** *****
consensus_3348#0 TCAATGACGAGAACTGGATCAAGAACGAGTTCATCCCATGCGTGCAGAAGCGAGGCGCTG 764
consensus_3348#1 TCAAGGACGAGAACTGGATCAAGAACGAGTTCATACCGTGCGTGCAGAAGCGAGGCGCGG 777
**** ***************************** ** ******************** *
consensus_3348#0 CGATCATTGCGGCCCGAAAGCTCTCGTCAGCCATGTCGGCGGCGAAGGCCATCTGCGACC 824
consensus_3348#1 CCATTATTGCCGCTCGCAAGCTCTCGTCGGCCATGTCGGCTGCCAAGGCGATTTGCGATC 837
* ** ***** ** ** *********** *********** ** ***** ** ***** *
consensus_3348#0 ACATGCGAGACTGGTGGCACGGAACTCAAGGAGACGAGTGGGTCTCAATGGGCATTGTCT 884
consensus_3348#1 ACATGCGTGACTGGTGGCACGGAACGAGCGGCGACGAGTGGGTCTCCATGGGCATCATTT 897
******* ***************** ** ************** ******** * *
consensus_3348#0 CTGACGGATCGTACGGAATCGAGAAGGGACTCGTCTACAGCTACCCTGTGCGCATTGCCA 944
consensus_3348#1 CGGACGGCTCGTACGGCATCGAGAAAGGTCTCGTGTACAGCTACCCGGTGCGAATCGTCA 957
* ***** ******** ******** ** ***** *********** ***** ** * **
consensus_3348#0 ACAAGAAGTGGACCATTGTGCAAGGACTCAGCGTCTCTGACTGGGCTCGTGATCTTATGG 1004
consensus_3348#1 ACAGGAAGTGGACGATCGTGCAAGGTCTCGCCATCAACGACTGGGCTCGATCGCTCATGG 1017
*** ********* ** ******** *** * ** *********** ** ****
consensus_3348#0 ACAAGACCGCGAAAGAACTCATCGATGAGAGAAATGACGCTCTTGAGGCTACTAGCAAAT 1064
consensus_3348#1 ACAAGACTGCTCAAGAGCTCATCGAAGAGAGAAACGACGCTTTCGATGCTACTA---AAT 1074
******* ** **** ******** ******** ****** * ** ******* ***
consensus_3348#0 AGATTGAATATTGACTCAACCAATTGATGATCTCTTTTTTGAATGTTCATCCTTCCTTTT 1124
consensus_3348#1 AGA---AATTTTCATTCTAT-AATTTTTAATTGAACACTAAAAAAAAAGACGAGGCTTCA 1130
*** *** ** * ** * **** * ** * ** * ***
consensus_3348#0 -CTAGATCT--AGTAGACTTTTTTATTACTATATTGTACTGCCAATTTTATTCGTAAACT 1181
consensus_3348#1 ATTAGATCTCAACTAAAAGCATATACAACAAGTTTTCATT-----TTTTATTTTTA--CT 1183
******* * ** * * ** ** * ** * * ******* ** **
consensus_3348#0 TAAAAAAAAACTTTATATTTTAGATTAA-ATTTTTATTTTAGTTT--TTAATTTTTAGTT 1238
consensus_3348#1 TATTTAGA---TTTGTTTTTGAAAGCATCATTTACATTAGAAAATAATAGGTTTTCTTTT 1240
** * * *** * *** * * * **** *** * * * **** **
consensus_3348#0 GTCTTAAAAAGATCCTAGTTTAATAAAACTTG 1270
consensus_3348#1 GTGTT--------------------------- 1245
** **
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||