These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3368#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 860 fasta sequence [GCACACCATCCAGGCTTCGCTTCCTCCAATCCACGACAATGGCGCCCGCGTCGCTGACGAGATTGACCAACCCGTTGCCGTGCGCCTCTCCATCTCCAAGATGCCGGCGCCGGCCGGGGAGATCTCCGCCGGCGAGGGCGGCGGCGTGCGGGGTGGTTTCCAGGAGGAGGGCGGTGTCGGAGATGGCGATTCTTGGCGGCGCCGCCGCGGCCGCGGCCTCCTGCTGCGTCGATCTCTTCTTCGCCCACATGCCTGCCCGTGCCGCCACGCTGGAGCCTGATGTGATCAGGTACAGAAAGCTGGACAGTGGAGTGAAGCTTGAAGATGTTGTGGATGGCGAGGGTCCAGAAGCACGTGAAGGAGATGTCGTGCAATTCAACTATGTGTGCCGCCGCGCAAATGGTTATTTCGTGCATAGCACGGTTGACCAGTTTAGCGGCGAGAGTAAGCCGGTCACACTTGCACTTGATGGAAAAGAGATGATTCGAGGTCTCAAAGACGTCATCGTTGGAATGAAGACAGGAGGTAAGAGGAGAGCTCTGATACCTCCTCAAGTAGGTTACACTGATGAGAGCTTGCAGCCCATACCAGAAGAGTTCGGTCCACGGCGAAGCCTCCTGTCACATGCCAAGGAGCCTCTGGTGTTTGAGGTTCAGCTGCTCAAGGTCCTCTGACCCTGAATTTTTCTGCCATTATCTAATCATCACATCCTATAGTGTTCACTCTTCAAAGAATATGCATTTCTCTTTCAGAATAAACTCAGAAAACTGTACTGTTTCATATGTATAAGATACAGTGATCACTTGCTGATTTGAAACGCAACTAGCAGCAAGTTGAATCAATGAAAGAGACAATGAACA] [+] EMBL AK064726 [GCACACCATCCAGGCTTCGCTTCCTCCAATCCACGACAATGGCGCCCGCGTCGCTGACGAGATTGACCAACCCGTTGCCGTGCGCCTCTCCATCTCCAAGATGCCGGCGCCGGCCGGGGAGATCTCCGCCGGCGAGGGCGGCGGCGTGCGGGGTGGTTTCCAGGAGGAGGGCGGTGTCGGAGATGGCGATTCTTGGCGGCGCCGCCGCGGCCGCGGCCTCCTGCTGCGTCGATCTCTTCTTCGCCCACATGCCTGCCCGTGCCGCCACGCTGGAGCCTGATGTGATCAGGTACAGAAAGCTGGACAGTGGAGTGAAGCTTGAAGATGTTGTGGATGGCGAGGGTCCAGAAGCACGTGAAGGAGATGTCGTGCAATTCAACTATGTGTGCCGCCGCGCAAATGGTTATTTCGTGCATAGCACGGTTGACCAGTTTAGCGGCGAGAGTAAGCCGGTCACACTTGCACTTGATGGAAAAGAGATGATTCGAGGTCTCAAAGACGTCATCGTTGGAATGAAGACAGGAGGTAAGAGGAGAGCTCTGATACCTCCTCAAGTAGGTTACACTGATGAGAGCTTGCAGCCCATACCAGAAGAGTTCGGTCCACGGCGAAGCCTCCTGTCACATGCCAAGGAGCCTCTGGTGTTTGAGGTTCAGCTGCTCAAGGTCCTCTGACCCTGAATTTTTCTGCCATTATCTAATCATCACATCCTATAGTGTTCACTCTTCAAAGAATATGCATTTCTCTTTCAGAATAAACTCAGAAAACTGTACTGTTTCATATGTATAAGATACAGTGATCACTTGCTGATTTGAAACGCAACTAGCAGCAAGTTGAATCAATGAAAGAGACAATGAACA] consensusID : consensus_3368#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 404 fasta sequence [CAATTCAACTATGTGTGCCGCCGCGCAAATGGTTATTTCGTGCATAGCACGGTTGACCAGTTTAGCGGCGAGAGTAAGCCGGTCACACTTGCACTTGATGGAAAAGAGGTTATTAATTAGCTCCGCTCCTGAAAATTTCGCATCATTCAGATATCCTCACATTTTTCAACAGTTTTGAGTTATTCTGATATCTGGTTTAATAGTCTTGTTTTAAGTCATTTACAGATGATTCGAGGTCTCAAAGACGTCATCGTTGGAATGAAGACAGGAGGTAAGAGGAGAGCTCTGATACCTCCTCAAGTAGGTTACACTGATGAGAGCTTGCAGCCCATACCAGAAGAGGTACAAGTTACAAAACTACCTGATGAGCTAAGCTGATTGCTGCAACATATTCATCCTGTGCA] [+] EMBL CA767105 [CAATTCAACTATGTGTGCCGCCGCGCAAATGGTTATTTCGTGCATAGCACGGTTGACCAGTTTAGCGGCGAGAGTAAGCCGGTCACACTTGCACTTGATGGAAAAGAGGTTATTAATTAGCTCCGCTCCTGAAAATTTCGCATCATTCAGATATCCTCACATTTTTCAACAGTTTTGAGTTATTCTGATATCTGGTTTAATAGTCTTGTTTTAAGTCATTTACAGATGATTCGAGGTCTCAAAGACGTCATCGTTGGAATGAAGACAGGAGGTAAGAGGAGAGCTCTGATACCTCCTCAAGTAGGTTACACTGATGAGAGCTTGCAGCCCATACCAGAAGAGGTACAAGTTACAAAACTACCTGATGAGCTAAGCTGATTGCTGCAACATATTCATCCTGTGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3368#0 GCACACCATCCAGGCTTCGCTTCCTCCAATCCACGACAATGGCGCCCGCGTCGCTGACGA 60 consensus_3368#1 ------------------------------------------------------------ consensus_3368#0 GATTGACCAACCCGTTGCCGTGCGCCTCTCCATCTCCAAGATGCCGGCGCCGGCCGGGGA 120 consensus_3368#1 ------------------------------------------------------------ consensus_3368#0 GATCTCCGCCGGCGAGGGCGGCGGCGTGCGGGGTGGTTTCCAGGAGGAGGGCGGTGTCGG 180 consensus_3368#1 ------------------------------------------------------------ consensus_3368#0 AGATGGCGATTCTTGGCGGCGCCGCCGCGGCCGCGGCCTCCTGCTGCGTCGATCTCTTCT 240 consensus_3368#1 ------------------------------------------------------------ consensus_3368#0 TCGCCCACATGCCTGCCCGTGCCGCCACGCTGGAGCCTGATGTGATCAGGTACAGAA-AG 299 consensus_3368#1 ----CAATTCAACTATGTGTGCCGCCGCGCAAATGGTTATT----TCGTGCATAGCACGG 52 * * ** ******** *** * * * ** * * ** * * consensus_3368#0 CTGGACAGTGGAGTGAAGCTTGAAGATGTTGTGGATGGCGAGGGTCCAGAAGCACGTGAA 359 consensus_3368#1 TTGACCAGTTTAGCG--GCGAGAGTAAGCCG-----GTCACACTTGCACTTGATGGAAAA 105 ** **** ** * ** ** * * * * * * ** * * ** consensus_3368#0 GGAGATGTCGTGCAATTCAACTATGTGTGCCGCCGCGCAAATGGTTATTTCGTGCATAGC 419 consensus_3368#1 GAGGTTATTAATTAGCTCCGCTCCTGAAAATTTCGCATCATTCAGATATCCTCACATTTT 165 * * * * * ** ** *** * * * * *** consensus_3368#0 ACGGTTGACCAGTTTAGCGGCGAGAGTAAGCCGGTCACACTTGCACTTGATGGAAAAGAG 479 consensus_3368#1 TCAACAGTTTTGAGTTATTCTGATATCTGGTTTAATAGTCTTGTTTTAAGTCATTTACAG 225 * * * * ** * * * **** * * * ** consensus_3368#0 ATGATTCGAGGTCTCAAAGACGTCATCGTTGGAATGAAGACAGGAGGTAAGAGGAGAGCT 539 consensus_3368#1 ATGATTCGAGGTCTCAAAGACGTCATCGTTGGAATGAAGACAGGAGGTAAGAGGAGAGCT 285 ************************************************************ consensus_3368#0 CTGATACCTCCTCAAGTAGGTTACACTGATGAGAGCTTGCAGCCCATACCAGAAGAGTTC 599 consensus_3368#1 CTGATACCTCCTCAAGTAGGTTACACTGATGAGAGCTTGCAGCCCATACCAGAAGAGGT- 344 ********************************************************* * consensus_3368#0 GGTCCACGGCGAAGCCTCCTGTCACATGCCAAGGAGCCTCTGGTGTTTGAGGTTCAGC-T 658 consensus_3368#1 -ACAAGTTACAAAACTACCTG--ATGAGCTAAGCTGATT--GCTGCAACATATTCATCCT 399 * ** * **** * ** *** * * * ** * **** * * consensus_3368#0 GCTCAAGGTCCTCTGACCCTGAATTTTTCTGCCATTATCTAATCATCACATCCTATAGTG 718 consensus_3368#1 GTGCA------------------------------------------------------- 404 * ** consensus_3368#0 TTCACTCTTCAAAGAATATGCATTTCTCTTTCAGAATAAACTCAGAAAACTGTACTGTTT 778 consensus_3368#1 ------------------------------------------------------------ consensus_3368#0 CATATGTATAAGATACAGTGATCACTTGCTGATTTGAAACGCAACTAGCAGCAAGTTGAA 838 consensus_3368#1 ------------------------------------------------------------ consensus_3368#0 TCAATGAAAGAGACAATGAACA 860 consensus_3368#1 ---------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||