These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3372#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 648 fasta sequence [TGACCACGTGGAGCAGCTCTGCGACGTCTGCGTGGTGACAAAGCAGCGGCGGCTCCCCTTTCCCCAGCAGACGAGCTTCCGAGCCAAGGAGCGGCTCGGGCTCGTGCACGGGGACTTGTGTGGCCCAGTGACACCGGCCACACCAGGAGGACGACGTTATTTCCTGCTGCTCGTCGACGACCTCTCCCGCTACATGTGGGTGATGGTCCTCGGCAGCAAGGGAGAGGCTGCGGACGCCATCAGGCATGCGCAGGCTGCTGCAGAGGCGGAGTGCGGCCGCAAGCTGCGCGTGCTGCGCACCGACAACGGCGGCGAATTCACGGCGGCTGAATTCGCGTCGTACTGCGCTGATGAGGGCATTCAGCGCCACTACACCGCGCCGTACAGCCCACAGCAGAACGGCGTCGTCGAGCGGCGCAACCAGACGGTTGTGGGGATGGCTCGGGCCCTCCTCAAGCAGAGGGGGATGCCGGCCATCTTCTGGGGGGAGGCGGTGGTGACGGCCGCCTACATCCTCAACCGCTCGCCTACCAAGGCCCTCGATGGCAGGACACCGTACGAGGCTTGGCATGGGCGCAAGCCGGCGGTCTCCCACCTGCGGGTCTTCGGCTGCCTCGCGTTCGCCAAGGAGCTTGGCCACATCGGCAA] [+] EMBL CB666196 [TGACCACGTGGAGCAGCTCTGCGACGTCTGCGTGGTGACAAAGCAGCGGCGGCTCCCCTTTCCCCAGCAGACGAGCTTCCGAGCCAAGGAGCGGCTCGGGCTCGTGCACGGGGACTTGTGTGGCCCAGTGACACCGGCCACACCAGGAGGACGACGTTATTTCCTGCTGCTCGTCGACGACCTCTCCCGCTACATGTGGGTGATGGTCCTCGGCAGCAAGGGAGAGGCTGCGGACGCCATCAGGCATGCGCAGGCTGCTGCAGAGGCGGAGTGCGGCCGCAAGCTGCGCGTGCTGCGCACCGACAACGGCGGCGAATTCACGGCGGCTGAATTCGCGTCGTACTGCGCTGATGAGGGCATTCAGCGCCACTACACCGCGCCGTACAGCCCACAGCAGAACGGCGTCGTCGAGCGGCGCAACCAGACGGTTGTGGGGATGGCTCGGGCCCTCCTCAAGCAGAGGGGGATGCCGGCCATCTTCTGGGGGGAGGCGGTGGTGACGGCCGCCTACATCCTCAACCGCTCGCCTACCAAGGCCCTCGATGGCAGGACACCGTACGAGGCTTGGCATGGGCGCAAGCCGGCGGTCTCCCACCTGCGGGTCTTCGGCTGCCTCGCGTTCGCCAAGGAGCTTGGCCACATCGGCAA] consensusID : consensus_3372#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 632 fasta sequence [CGTGAGCACAGCTGCTCACCGGAGTCTACTACATCCGCGTGAGAATTCTATAATCAGCGTGGGACAGCTGGATGAGAACGGCTCACGCGTGTTGGTCGAGGACGGACTCATGAGGATTTGGGATCGCCGTCGTCGCCTTCTTGCCAAGGTAACCAGAGGCACTAATCGACTCTACATCCTCAGCGCGCAGGTCGCACATCCAGTTTGCCTCGCCGCTCGTCGGGACGACGAGGCGTGGCAGTGGCACGAGCGCTTCGGGCACCTCCACTTCGAGGCCCTGAAGCAGCTCAGTGCCAAGGAGATGGTGCGAGGCATGCCGTGCCTTGACCACGTGGAGCAGCTCTGCGACGTCTGCGTGGTGACAAAGCAGCGGCGGCTCCCCTTTCCCCAGCAGACGAGCTTCCGAGCCAAGGAGCGGCTCGGGCTCGTGCACGGGGACTTGTGTGGCCCAGTGACACCGGCCACACCAGGAGGACAACGTTATTTCCTGCTGCTCGTCGACGACCTCTCCCGCTACATGTGGGTGATGGTCCTCGGCAGCAAGGGAGAGCTGCGACGCCATCAGGCATGCGCAGGCTGCTGCAGAGCGGAGTCGCCGCTCTAGAGTATCCTGAGGGCCCAAGCTACGCGTA] [+] EMBL BI806499 [CGTGAGCACAGCTGCTCACCGGAGTCTACTACATCCGCGTGAGAATTCTATAATCAGCGTGGGACAGCTGGATGAGAACGGCTCACGCGTGTTGGTCGAGGACGGACTCATGAGGATTTGGGATCGCCGTCGTCGCCTTCTTGCCAAGGTAACCAGAGGCACTAATCGACTCTACATCCTCAGCGCGCAGGTCGCACATCCAGTTTGCCTCGCCGCTCGTCGGGACGACGAGGCGTGGCAGTGGCACGAGCGCTTCGGGCACCTCCACTTCGAGGCCCTGAAGCAGCTCAGTGCCAAGGAGATGGTGCGAGGCATGCCGTGCCTTGACCACGTGGAGCAGCTCTGCGACGTCTGCGTGGTGACAAAGCAGCGGCGGCTCCCCTTTCCCCAGCAGACGAGCTTCCGAGCCAAGGAGCGGCTCGGGCTCGTGCACGGGGACTTGTGTGGCCCAGTGACACCGGCCACACCAGGAGGACAACGTTATTTCCTGCTGCTCGTCGACGACCTCTCCCGCTACATGTGGGTGATGGTCCTCGGCAGCAAGGGAGAGCTGCGACGCCATCAGGCATGCGCAGGCTGCTGCAGAGCGGAGTCGCCGCTCTAGAGTATCCTGAGGGCCCAAGCTACGCGTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3372#0 --TGACCAC-GTGGAGCAGC----TCTGCGACGTCTGCGTGGTGACA----AAGCAGCGG 49 consensus_3372#1 CGTGAGCACAGCTGCTCACCGGAGTCTACTACATCCGCGTGAGAATTCTATAATCAGCGT 60 *** *** * * ** * *** * ** ** ***** * ** ***** consensus_3372#0 CGGCTCCCCTTTCCCCAGCAGACGA-GCTTCCGAGCCAAGGAGCGGCTCGGGCTCGTGCA 108 consensus_3372#1 GGGACAGCTGGATGAGAACGGCTCACGCGTGTTGGTCGAGGACGGACTCATGAGGATTTG 120 ** * * * * * ** * * * **** * *** * * consensus_3372#0 CGGGGACTTGTGTGGCCCAGTGACACCGGCCACACCAGGAG---GACGACGTTATTTCCT 165 consensus_3372#1 GGATCGCCGTCGTCGCCTTCTTGCCAAGGTAACCAGAGGCACTAATCGACTCTACATCCT 180 * * ** *** * * ** ** *** **** ** **** consensus_3372#0 GCTGCTCGTCGACGACCTCTCCCGCTA--CATGTGGGTGAT-GGTCCTCGGCAGCAAGGG 222 consensus_3372#1 -CAGCGCGCAGGTCGCACATCCAGTTTGCCTCGCCGCTCGTCGGGACGACGAGGCGTGGC 239 * ** ** * * *** * * * * * * * ** * * ** ** consensus_3372#0 AGAGGCTGCGGACGCCATCAGGCATGCGCAGGCTGCTGCAGAGGCGGAGTGCGGCCGCAA 282 consensus_3372#1 AGTGGC-ACGAGCGCT-TCGGGCACCTCCACTTCGAGGCCCTGAAGCAGCTCAGTGCCAA 297 ** *** ** *** ** **** ** * ** * * ** * * *** consensus_3372#0 GCTGCGCGTGCTGCGCACCGACAACGGCGGCGAATTCACGGCGGCTGAATTCGCGTCGTA 342 consensus_3372#1 GGAGATGGTGCGAGGCAT-----GCCGTGCCTTGACCACGTGGAGCAGCTCTGCGACGT- 351 * * **** *** * * * * **** * * *** *** consensus_3372#0 CTGCGCTGATGAGGGCATTCAGCGCCACTACACCGCGCCGTACAGCCCACAGCAGAACGG 402 consensus_3372#1 CTGCG-TGGTGA-------CAAAGCAGCGGCGGCTCCCCTT----TCCCCAGCAGACGAG 399 ***** ** *** ** ** * * * * ** * ** ******* * consensus_3372#0 CGTCGTCGAGCGGCGCAACCAGACGGTTGTGGGGATGGCTCGGGCCCTCCTCAAGCAGAG 462 consensus_3372#1 CTTC--CGAGC----CAAGGAG-CGGCTCGGGCTCGTGCACGGGGACTTGTGTGGCCCAG 452 * ** ***** *** ** *** * ** ** **** ** * ** ** consensus_3372#0 GGGGATGCCGGCCATCTTCTGGGGGGAGGCGGTGGTGACGGCCGCCT----ACATCCTCA 518 consensus_3372#1 T--GACACCGGCCA-CACCAGGAGGACAACGTTATTTCCTGCTGCTCGTCGACGACCTCT 509 ** ******* * * ** ** ** * * * ** ** ** **** consensus_3372#0 ACCGCT---CGCCTACCAAGGCCCTCGATGGCAGGACACCG-TACGAGGCTTGGCATGGG 574 consensus_3372#1 CCCGCTACATGTGGGTGATGGTCCTCGGCAGCAAGGGAGAGCTGCGACGCCAT---CAGG 566 ***** * * ** ***** *** * * * * *** ** ** consensus_3372#0 CGCAAGCCGGCGGTCTCCCACCTGCGGGTCTTCGGCTGCCTCGCGTTCGCCAAGGAGCTT 634 consensus_3372#1 CATGCGCAGGCTGCTGCAGA---GCGGAGTCGCCGCT--CTAGAGTATCCTGAGGGCCCA 621 * ** *** * * * **** * *** ** * ** * *** * consensus_3372#0 GGCCACATCGGCAA 648 consensus_3372#1 AGCTACGCGTA--- 632 ** ** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||