These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3418#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 581 fasta sequence [TTTATTGATTTTCCCCCCCATTGCGTTGCCAAGATGCCTGCCAAGCTTGAGGACTGGGATGATGAGCTCGATGGTGAGTGGGAGGCCCCCCAAATCCCCAACCTGAGTACAAGGGAGAGTGGAGAGCTAAGCAAATCCCCAACCCTGCCTACAAGGGCGAGTGGGTCCACCCATTGGTCGACAACCCCGAGTTCTTCGAGGACGACAAGTTATACCTCTTCAAGGACAACGCCTACCTTGGTTTCGAGTTATGGCAAGTGAAGGCTGGTACCATCTTCGATAACATCCTCGTCACCGACTCTGTTCAAGAGGCCAAGGACTTCGCCACGAGACATTCGAGAAGACCATCAAGGGTGAGAAGGCAGCCAAGGAGGCCGACGACAAGAAGCAAGAGGAAGAGAGAAAGAAGGCTGAGGAGGCCGCCGCCGAGAAGGATACCGAGGAGGATGAGGAGGAGTCTGAGCCCAAGGACAAGGACGAGCTCTAAATCATTTTGTTACACTAATATATTATACTTATACAACTCACACAAAACACAGAAACACTGCCCAATAAAAAATCAAAAATATATAATGTAAAAA] [+] EMBL BI803308 [TTTATTGATTTTCCCCCCCATTGCGTTGCCAAGATGCCTGCCAAGCTTGAGGACTGGGATGATGAGCTCGATGGTGAGTGGGAGGCCCCCCAAATCCCCAACCTGAGTACAAGGGAGAGTGGAGAGCTAAGCAAATCCCCAACCCTGCCTACAAGGGCGAGTGGGTCCACCCATTGGTCGACAACCCCGAGTTCTTCGAGGACGACAAGTTATACCTCTTCAAGGACAACGCCTACCTTGGTTTCGAGTTATGGCAAGTGAAGGCTGGTACCATCTTCGATAACATCCTCGTCACCGACTCTGTTCAAGAGGCCAAGGACTTCGCCACGAGACATTCGAGAAGACCATCAAGGGTGAGAAGGCAGCCAAGGAGGCCGACGACAAGAAGCAAGAGGAAGAGAGAAAGAAGGCTGAGGAGGCCGCCGCCGAGAAGGATACCGAGGAGGATGAGGAGGAGTCTGAGCCCAAGGACAAGGACGAGCTCTAAATCATTTTGTTACACTAATATATTATACTTATACAACTCACACAAAACACAGAAACACTGCCCAATAAAAAATCAAAAATATATAATGTAAAAA] consensusID : consensus_3418#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 459 fasta sequence [AATTGGGTCCCAACCCAATTGGGGTTCGAACAAACCCCGAGTTTCCTTCGGAGGGACAGACAAAGGTTATAACACTCTTGCAAGGACAACGCCTACCTTGTTTCGAGTTTATGGCAAGTGAAGCCTGGTACCATCTTCGATAACATCCTCGTCACCGACTCTGTTCAAGAGGCCAAGGACTTCGCCAAACGAGACATTCGAGAAGACCAATCAAGGGTGAGAAGGCAAGCCACAAGGAGGCCGACGACAAGAAGCAAGAGGAAGAGAGAAAGAAGGCTGAGGAGCCCGCCAGCCGAGAAGGATACCGAGGTAGGATGAGGAGGAGTCTGAGCCACAAGGACAAGGACGAGCTCTAAATCAATTTTGTTACAACTAATATATTATACTTATACAAACTCAAACAACAAAAACAACAAAAACAACTGAAAAATAAAAAATAAAAAATATATAATGTAAAAA] [+] EMBL BI803933 [AATTGGGTCCCAACCCAATTGGGGTTCGAACAAACCCCGAGTTTCCTTCGGAGGGACAGACAAAGGTTATAACACTCTTGCAAGGACAACGCCTACCTTGTTTCGAGTTTATGGCAAGTGAAGCCTGGTACCATCTTCGATAACATCCTCGTCACCGACTCTGTTCAAGAGGCCAAGGACTTCGCCAAACGAGACATTCGAGAAGACCAATCAAGGGTGAGAAGGCAAGCCACAAGGAGGCCGACGACAAGAAGCAAGAGGAAGAGAGAAAGAAGGCTGAGGAGCCCGCCAGCCGAGAAGGATACCGAGGTAGGATGAGGAGGAGTCTGAGCCACAAGGACAAGGACGAGCTCTAAATCAATTTTGTTACAACTAATATATTATACTTATACAAACTCAAACAACAAAAACAACAAAAACAACTGAAAAATAAAAAATAAAAAATATATAATGTAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3418#0 TTTATTGATTTTCCCCCCCATTGCGTTGCCAAGATGCCTGCCAAGCTTGAGGACTGGGAT 60 consensus_3418#1 ------------------------------------------------------------ consensus_3418#0 GATGAGCTCGATGGTGAGTGGGAGGCCCCCCAAATCCCCAACCTGAGTACAAGGGAGAGT 120 consensus_3418#1 ------------------------------------------------------------ consensus_3418#0 GGAGAGCTAAGCAAATCCCCAACCCTGCCTACAAGGGCGAGTGGGTCCACCCATTGGTCG 180 consensus_3418#1 ---------AATTGGGTCCCAACCC-------AATTGGGGTTCGAACAAACCCCGAGTTT 44 * ******** ** * * * * * * ** ** consensus_3418#0 ACAACCCCGAGTTCTTCGAGGACGACAAGTTATACCTCTTCAAGGACAACGCCTACCTTG 240 consensus_3418#1 CCTTCGGAGGGACAGACAAAGGTTATAA----CACTCTTGCAAGGACAACGCCTACCTTG 100 * * * * * * * * ** ** * ******************** consensus_3418#0 GTTTCGAGTTATGGCAAGTGAAGGCTGGTACCATCTTCGATAACATCCTCGTCACCGACT 300 consensus_3418#1 TTTCGAGTTTATGGCAAGTGAAGCCTGGTACCATCTTCGATAACATCCTCGTCACCGACT 160 ** *************** ************************************ consensus_3418#0 CTGTTCAAGAGGCCAAGGACTTCGCCA--CGAGACATTCGAGAAGACCA-TCAAGGGTGA 357 consensus_3418#1 CTGTTCAAGAGGCCAAGGACTTCGCCAAACGAGACATTCGAGAAGACCAATCAAGGGTGA 220 *************************** ******************** ********** consensus_3418#0 GAAGGCAGCC---AAGGAGGCCGACGACAAGAAGCAAGAGGAAGAGAGAAAGAAGGCTGA 414 consensus_3418#1 GAAGGCAAGCCACAAGGAGGCCGACGACAAGAAGCAAGAGGAAGAGAGAAAGAAGGCTGA 280 ******* * *********************************************** consensus_3418#0 GGAGGCCGCC-GCCGAGAAGGATACCGAGG-AGGATGAGGAGGAGTCTGAGCC-CAAGGA 471 consensus_3418#1 GGAGCCCGCCAGCCGAGAAGGATACCGAGGTAGGATGAGGAGGAGTCTGAGCCACAAGGA 340 **** ***** ******************* ********************** ****** consensus_3418#0 CAAGGACGAGCTCTAAATCA-TTTTGTTACA-CTAATATATTATACTTATACAA-CTCAC 528 consensus_3418#1 CAAGGACGAGCTCTAAATCAATTTTGTTACAACTAATATATTATACTTATACAAACTCAA 400 ******************** ********** ********************** **** consensus_3418#0 ACAA----AACA-CAGAAACA-CTGCCCAATAAAAAATCAAAAATATATAATGTAAAAA 581 consensus_3418#1 ACAACAAAAACAACAAAAACAACTGAAAAATAAAAAATAAAAAATATATAATGTAAAAA 459 **** **** ** ***** *** ********** ******************** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||