Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 3418 cluster # 3418       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3418#0 length = 581 sequences # 1  
consensus_3418#1 length = 459 sequences # 1  

consensusID : consensus_3418#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 581
fasta sequence
                              [TTTATTGATTTTCCCCCCCATTGCGTTGCCAAGATGCCTGCCAAGCTTGAGGACTGGGATGATGAGCTCGATGGTGAGTGGGAGGCCCCCCAAATCCCCAACCTGAGTACAAGGGAGAGTGGAGAGCTAAGCAAATCCCCAACCCTGCCTACAAGGGCGAGTGGGTCCACCCATTGGTCGACAACCCCGAGTTCTTCGAGGACGACAAGTTATACCTCTTCAAGGACAACGCCTACCTTGGTTTCGAGTTATGGCAAGTGAAGGCTGGTACCATCTTCGATAACATCCTCGTCACCGACTCTGTTCAAGAGGCCAAGGACTTCGCCACGAGACATTCGAGAAGACCATCAAGGGTGAGAAGGCAGCCAAGGAGGCCGACGACAAGAAGCAAGAGGAAGAGAGAAAGAAGGCTGAGGAGGCCGCCGCCGAGAAGGATACCGAGGAGGATGAGGAGGAGTCTGAGCCCAAGGACAAGGACGAGCTCTAAATCATTTTGTTACACTAATATATTATACTTATACAACTCACACAAAACACAGAAACACTGCCCAATAAAAAATCAAAAATATATAATGTAAAAA]

[+] EMBL BI803308             [TTTATTGATTTTCCCCCCCATTGCGTTGCCAAGATGCCTGCCAAGCTTGAGGACTGGGATGATGAGCTCGATGGTGAGTGGGAGGCCCCCCAAATCCCCAACCTGAGTACAAGGGAGAGTGGAGAGCTAAGCAAATCCCCAACCCTGCCTACAAGGGCGAGTGGGTCCACCCATTGGTCGACAACCCCGAGTTCTTCGAGGACGACAAGTTATACCTCTTCAAGGACAACGCCTACCTTGGTTTCGAGTTATGGCAAGTGAAGGCTGGTACCATCTTCGATAACATCCTCGTCACCGACTCTGTTCAAGAGGCCAAGGACTTCGCCACGAGACATTCGAGAAGACCATCAAGGGTGAGAAGGCAGCCAAGGAGGCCGACGACAAGAAGCAAGAGGAAGAGAGAAAGAAGGCTGAGGAGGCCGCCGCCGAGAAGGATACCGAGGAGGATGAGGAGGAGTCTGAGCCCAAGGACAAGGACGAGCTCTAAATCATTTTGTTACACTAATATATTATACTTATACAACTCACACAAAACACAGAAACACTGCCCAATAAAAAATCAAAAATATATAATGTAAAAA]


>consensus_3418#0 TTTATTGATTTTCCCCCCCATTGCGTTGCCAAGATGCCTGCCAAGCTTGAGGACTGGGAT GATGAGCTCGATGGTGAGTGGGAGGCCCCCCAAATCCCCAACCTGAGTACAAGGGAGAGT GGAGAGCTAAGCAAATCCCCAACCCTGCCTACAAGGGCGAGTGGGTCCACCCATTGGTCG ACAACCCCGAGTTCTTCGAGGACGACAAGTTATACCTCTTCAAGGACAACGCCTACCTTG GTTTCGAGTTATGGCAAGTGAAGGCTGGTACCATCTTCGATAACATCCTCGTCACCGACT CTGTTCAAGAGGCCAAGGACTTCGCCACGAGACATTCGAGAAGACCATCAAGGGTGAGAA GGCAGCCAAGGAGGCCGACGACAAGAAGCAAGAGGAAGAGAGAAAGAAGGCTGAGGAGGC CGCCGCCGAGAAGGATACCGAGGAGGATGAGGAGGAGTCTGAGCCCAAGGACAAGGACGA GCTCTAAATCATTTTGTTACACTAATATATTATACTTATACAACTCACACAAAACACAGA AACACTGCCCAATAAAAAATCAAAAATATATAATGTAAAAA



consensusID : consensus_3418#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 459
fasta sequence
                              [AATTGGGTCCCAACCCAATTGGGGTTCGAACAAACCCCGAGTTTCCTTCGGAGGGACAGACAAAGGTTATAACACTCTTGCAAGGACAACGCCTACCTTGTTTCGAGTTTATGGCAAGTGAAGCCTGGTACCATCTTCGATAACATCCTCGTCACCGACTCTGTTCAAGAGGCCAAGGACTTCGCCAAACGAGACATTCGAGAAGACCAATCAAGGGTGAGAAGGCAAGCCACAAGGAGGCCGACGACAAGAAGCAAGAGGAAGAGAGAAAGAAGGCTGAGGAGCCCGCCAGCCGAGAAGGATACCGAGGTAGGATGAGGAGGAGTCTGAGCCACAAGGACAAGGACGAGCTCTAAATCAATTTTGTTACAACTAATATATTATACTTATACAAACTCAAACAACAAAAACAACAAAAACAACTGAAAAATAAAAAATAAAAAATATATAATGTAAAAA]

[+] EMBL BI803933             [AATTGGGTCCCAACCCAATTGGGGTTCGAACAAACCCCGAGTTTCCTTCGGAGGGACAGACAAAGGTTATAACACTCTTGCAAGGACAACGCCTACCTTGTTTCGAGTTTATGGCAAGTGAAGCCTGGTACCATCTTCGATAACATCCTCGTCACCGACTCTGTTCAAGAGGCCAAGGACTTCGCCAAACGAGACATTCGAGAAGACCAATCAAGGGTGAGAAGGCAAGCCACAAGGAGGCCGACGACAAGAAGCAAGAGGAAGAGAGAAAGAAGGCTGAGGAGCCCGCCAGCCGAGAAGGATACCGAGGTAGGATGAGGAGGAGTCTGAGCCACAAGGACAAGGACGAGCTCTAAATCAATTTTGTTACAACTAATATATTATACTTATACAAACTCAAACAACAAAAACAACAAAAACAACTGAAAAATAAAAAATAAAAAATATATAATGTAAAAA]


>consensus_3418#1 AATTGGGTCCCAACCCAATTGGGGTTCGAACAAACCCCGAGTTTCCTTCGGAGGGACAGA CAAAGGTTATAACACTCTTGCAAGGACAACGCCTACCTTGTTTCGAGTTTATGGCAAGTG AAGCCTGGTACCATCTTCGATAACATCCTCGTCACCGACTCTGTTCAAGAGGCCAAGGAC TTCGCCAAACGAGACATTCGAGAAGACCAATCAAGGGTGAGAAGGCAAGCCACAAGGAGG CCGACGACAAGAAGCAAGAGGAAGAGAGAAAGAAGGCTGAGGAGCCCGCCAGCCGAGAAG GATACCGAGGTAGGATGAGGAGGAGTCTGAGCCACAAGGACAAGGACGAGCTCTAAATCA ATTTTGTTACAACTAATATATTATACTTATACAAACTCAAACAACAAAAACAACAAAAAC AACTGAAAAATAAAAAATAAAAAATATATAATGTAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3418#0      TTTATTGATTTTCCCCCCCATTGCGTTGCCAAGATGCCTGCCAAGCTTGAGGACTGGGAT 60
consensus_3418#1      ------------------------------------------------------------
                                                                                  

consensus_3418#0      GATGAGCTCGATGGTGAGTGGGAGGCCCCCCAAATCCCCAACCTGAGTACAAGGGAGAGT 120
consensus_3418#1      ------------------------------------------------------------
                                                                                  

consensus_3418#0      GGAGAGCTAAGCAAATCCCCAACCCTGCCTACAAGGGCGAGTGGGTCCACCCATTGGTCG 180
consensus_3418#1      ---------AATTGGGTCCCAACCC-------AATTGGGGTTCGAACAAACCCCGAGTTT 44
                               *       ********       **  * *  * *  * * **    **  

consensus_3418#0      ACAACCCCGAGTTCTTCGAGGACGACAAGTTATACCTCTTCAAGGACAACGCCTACCTTG 240
consensus_3418#1      CCTTCGGAGGGACAGACAAAGGTTATAA----CACTCTTGCAAGGACAACGCCTACCTTG 100
                       *  *   * *     * * *   * **     **   * ********************

consensus_3418#0      GTTTCGAGTTATGGCAAGTGAAGGCTGGTACCATCTTCGATAACATCCTCGTCACCGACT 300
consensus_3418#1      TTTCGAGTTTATGGCAAGTGAAGCCTGGTACCATCTTCGATAACATCCTCGTCACCGACT 160
                       **     *************** ************************************

consensus_3418#0      CTGTTCAAGAGGCCAAGGACTTCGCCA--CGAGACATTCGAGAAGACCA-TCAAGGGTGA 357
consensus_3418#1      CTGTTCAAGAGGCCAAGGACTTCGCCAAACGAGACATTCGAGAAGACCAATCAAGGGTGA 220
                      ***************************  ******************** **********

consensus_3418#0      GAAGGCAGCC---AAGGAGGCCGACGACAAGAAGCAAGAGGAAGAGAGAAAGAAGGCTGA 414
consensus_3418#1      GAAGGCAAGCCACAAGGAGGCCGACGACAAGAAGCAAGAGGAAGAGAGAAAGAAGGCTGA 280
                      *******  *   ***********************************************

consensus_3418#0      GGAGGCCGCC-GCCGAGAAGGATACCGAGG-AGGATGAGGAGGAGTCTGAGCC-CAAGGA 471
consensus_3418#1      GGAGCCCGCCAGCCGAGAAGGATACCGAGGTAGGATGAGGAGGAGTCTGAGCCACAAGGA 340
                      **** ***** ******************* ********************** ******

consensus_3418#0      CAAGGACGAGCTCTAAATCA-TTTTGTTACA-CTAATATATTATACTTATACAA-CTCAC 528
consensus_3418#1      CAAGGACGAGCTCTAAATCAATTTTGTTACAACTAATATATTATACTTATACAAACTCAA 400
                      ******************** ********** ********************** **** 

consensus_3418#0      ACAA----AACA-CAGAAACA-CTGCCCAATAAAAAATCAAAAATATATAATGTAAAAA 581
consensus_3418#1      ACAACAAAAACAACAAAAACAACTGAAAAATAAAAAATAAAAAATATATAATGTAAAAA 459
                      ****    **** ** ***** ***   ********** ********************




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)