These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_342#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 982 fasta sequence [GTGCAGCTGCCGTTGCCGACCTCGCGCTCGCCGCAGGCCACCGCGCCGCCGCTCGCCGCCGGCGCCGCACGCCGTACTGGGGGGGAGAGGGATTCGGAGAGATGCCTCCGAAGCGGCAGCGGTCGGCGGCGGGGCCGTCGGGGGAGGCGCCGGTCAACAGCCTGGACGACGGCTGCCTCATGCACATCTTCAGCTTCCTCAGCCCAATCCCAGATGGCGCTTCCTTGCATGCCATCCTCGACTGTGGTTGCGTGTTGAGAGGCCAATCAGAAATACAATAGAGCCAGGAGTCTATCCAAATCTTGAGTCTGCTGTTTCTGCAGCTAGGCCTGGGGATACTATTCTAATTGCTGCTGGTGGCACACATGTTGCACGTAATATCCAAATAAAGAAGCCTCTCTGCATTATTGGCGGGGGTGAGCTTCCTGACGACACAGTGTTAACATGTTCGCGTGGCTCTGACAATGCGTTGGAGTTCCATTCCACCTGCAAGATTGCAAATCTCACTATTAGAGCAGAGCTTGGGTGTTGTTTGCTTCATCGAAGTGGTAGATTAACTATTGAGGAGTGCTTGCTCCAGTGCGAGCAAAATCCTCTGGATTATTTGTCCTTCCCTATAATTAGCACAGCGATTGAGTATGATTCGTTCTCATCACTCAAGGAGCAAGGACATGGTGTAACTGTTGTTCGCACCCGCATTGAGGGGGGTGCGAAGGCCGTCAGGACTAATGGAACACTGGCGCTGCAACATGTGCGGGCTATCTATTCTCGCAGTTCTGTTTTCTTCTGGTTCGAAGTAGGAGAAAGGTAGGAATTCATGTAAACCTGTAAGGCCATGGCCATGTATCCTATCCAGTATCAACTCTTGGCATTGTCTGCCTCCTGTTTGTTGTAACATATGATAAATATTTTCTATTTGGATCAACAGGGACACTAGTTACAAGTTAACTGCATAAAGTTTGATAATTTCATAAACTTAGCT] [+] EMBL AK061060 [GTGCAGCTGCCGTTGCCGACCTCGCGCTCGCCGCAGGCCACCGCGCCGCCGCTCGCCGCCGGCGCCGCACGCCGTACTGGGGGGGAGAGGGATTCGGAGAGATGCCTCCGAAGCGGCAGCGGTCGGCGGCGGGGCCGTCGGGGGAGGCGCCGGTCAACAGCCTGGACGACGGCTGCCTCATGCACATCTTCAGCTTCCTCAGCCCAATCCCAGATGGCGCTTCCTTGCATGCCATCCTCGACTGTGGTTGCGTGTTGAGAGGCCAATCAGAAATACAATAGAGCCAGGAGTCTATCCAAATCTTGAGTCTGCTGTTTCTGCAGCTAGGCCTGGGGATACTATTCTAATTGCTGCTGGTGGCACACATGTTGCACGTAATATCCAAATAAAGAAGCCTCTCTGCATTATTGGCGGGGGTGAGCTTCCTGACGACACAGTGTTAACATGTTCGCGTGGCTCTGACAATGCGTTGGAGTTCCATTCCACCTGCAAGATTGCAAATCTCACTATTAGAGCAGAGCTTGGGTGTTGTTTGCTTCATCGAAGTGGTAGATTAACTATTGAGGAGTGCTTGCTCCAGTGCGAGCAAAATCCTCTGGATTATTTGTCCTTCCCTATAATTAGCACAGCGATTGAGTATGATTCGTTCTCATCACTCAAGGAGCAAGGACATGGTGTAACTGTTGTTCGCACCCGCATTGAGGGGGGTGCGAAGGCCGTCAGGACTAATGGAACACTGGCGCTGCAACATGTGCGGGCTATCTATTCTCGCAGTTCTGTTTTCTTCTGGTTCGAAGTAGGAGAAAGGTAGGAATTCATGTAAACCTGTAAGGCCATGGCCATGTATCCTATCCAGTATCAACTCTTGGCATTGTCTGCCTCCTGTTTGTTGTAACATATGATAAATATTTTCTATTTGGATCAACAGGGACACTAGTTACAAGTTAACTGCATAAAGTTTGATAATTTCATAAACTTAGCT] consensusID : consensus_342#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 621 fasta sequence [GCCACCGCGCCGCCGCTCGCCGCCGGCGCCGCACGCCGTACTGGGGGGGAGAGGGATTCGGAGAGATGCCTCCGAAGCGGCAGCGGTCGGCGGCGGGGCCGTCGGGGGAGGCGCCGGTCAACAGCCTGGACGACGGCTGCCTCATGCACATCTTCAGCTTCCTCAGCCCAATCCCAGATAGGTATAACACCGCCCTCGTTTGCCACAGATGGCGCTTCCTTGCATGCCATCCTCGACTGTGGTTGCGTGTTGAGAGGCCAATCAGAAATACAATAGAGCCAGGAGTCTATCCNAATCTTGAGTCTGCTGTTTCTGCAGCTAGGCCTGGGGATACTATTCTAATTGCTGCTGGTGGCACACATGTTGCACGTAATATCCAAATAAAGAAGCCTCTCTGCATTATTGGCGGGGGTGAGCTTCCTGACGACACAGTGTTAACATGTTCGCGTGGCTCTGACAATGCGTTGGAGTTCCATTCCACCTGCAAGATTGCAAATCTCACTATTAGAGCAGAGCTTGGGTGTTGTTTGCTTCATCNGAGTGGTAGATTAACTATTGAGGAGTGCTTGCTCCAGTGCGAGCAAATCCTCTGGATTATNTGTCCTTCCCTATAATTAGCAC] [+] EMBL CA755559 [GCCACCGCGCCGCCGCTCGCCGCCGGCGCCGCACGCCGTACTGGGGGGGAGAGGGATTCGGAGAGATGCCTCCGAAGCGGCAGCGGTCGGCGGCGGGGCCGTCGGGGGAGGCGCCGGTCAACAGCCTGGACGACGGCTGCCTCATGCACATCTTCAGCTTCCTCAGCCCAATCCCAGATAGGTATAACACCGCCCTCGTTTGCCACAGATGGCGCTTCCTTGCATGCCATCCTCGACTGTGGTTGCGTGTTGAGAGGCCAATCAGAAATACAATAGAGCCAGGAGTCTATCCNAATCTTGAGTCTGCTGTTTCTGCAGCTAGGCCTGGGGATACTATTCTAATTGCTGCTGGTGGCACACATGTTGCACGTAATATCCAAATAAAGAAGCCTCTCTGCATTATTGGCGGGGGTGAGCTTCCTGACGACACAGTGTTAACATGTTCGCGTGGCTCTGACAATGCGTTGGAGTTCCATTCCACCTGCAAGATTGCAAATCTCACTATTAGAGCAGAGCTTGGGTGTTGTTTGCTTCATCNGAGTGGTAGATTAACTATTGAGGAGTGCTTGCTCCAGTGCGAGCAAATCCTCTGGATTATNTGTCCTTCCCTATAATTAGCAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_342#0 GTGCAGCTGCCGTTGCCGACCTCGCGCTCGCCGCAGGCCACCGCGCCGCCGCTCGCCGCC 60 consensus_342#1 ------------------------------------GCCACCGCGCCGCCGCTCGCCGCC 24 ************************ consensus_342#0 GGCGCCGCACGCCGTACTGGGGGGGAGAGGGATTCGGAGAGATGCCTCCGAAGCGGCAGC 120 consensus_342#1 GGCGCCGCACGCCGTACTGGGGGGGAGAGGGATTCGGAGAGATGCCTCCGAAGCGGCAGC 84 ************************************************************ consensus_342#0 GGTCGGCGGCGGGGCCGTCGGGGGAGGCGCCGGTCAACAGCCTGGACGACGGCTGCCTCA 180 consensus_342#1 GGTCGGCGGCGGGGCCGTCGGGGGAGGCGCCGGTCAACAGCCTGGACGACGGCTGCCTCA 144 ************************************************************ consensus_342#0 TGCACATCTTCAGCTTCCTCAGCCCAATCCCAGAT------------------------- 215 consensus_342#1 TGCACATCTTCAGCTTCCTCAGCCCAATCCCAGATAGGTATAACACCGCCCTCGTTTGCC 204 *********************************** consensus_342#0 ------GGCGCTTCCTTGCATGCCATCCTCGACTGTGGTTGCGTGTTGAGAGGCCAATCA 269 consensus_342#1 ACAGATGGCGCTTCCTTGCATGCCATCCTCGACTGTGGTTGCGTGTTGAGAGGCCAATCA 264 ****************************************************** consensus_342#0 GAAATACAATAGAGCCAGGAGTCTATCCAAATCTTGAGTCTGCTGTTTCTGCAGCTAGGC 329 consensus_342#1 GAAATACAATAGAGCCAGGAGTCTATCCNAATCTTGAGTCTGCTGTTTCTGCAGCTAGGC 324 **************************** ******************************* consensus_342#0 CTGGGGATACTATTCTAATTGCTGCTGGTGGCACACATGTTGCACGTAATATCCAAATAA 389 consensus_342#1 CTGGGGATACTATTCTAATTGCTGCTGGTGGCACACATGTTGCACGTAATATCCAAATAA 384 ************************************************************ consensus_342#0 AGAAGCCTCTCTGCATTATTGGCGGGGGTGAGCTTCCTGACGACACAGTGTTAACATGTT 449 consensus_342#1 AGAAGCCTCTCTGCATTATTGGCGGGGGTGAGCTTCCTGACGACACAGTGTTAACATGTT 444 ************************************************************ consensus_342#0 CGCGTGGCTCTGACAATGCGTTGGAGTTCCATTCCACCTGCAAGATTGCAAATCTCACTA 509 consensus_342#1 CGCGTGGCTCTGACAATGCGTTGGAGTTCCATTCCACCTGCAAGATTGCAAATCTCACTA 504 ************************************************************ consensus_342#0 TTAGAGCAGAGCTTGGGTGTTGTTTGCTTCATCGAAGTGGTAGATTAACTATTGAGGAGT 569 consensus_342#1 TTAGAGCAGAGCTTGGGTGTTGTTTGCTTCATCNGAGTGGTAGATTAACTATTGAGGAGT 564 ********************************* ************************* consensus_342#0 GCTTGCTCCAGTGCGAGCAAAATCCTCTGGATTATTTGTCCTTCCCTATAATTAGCACAG 629 consensus_342#1 GCTTGCTCCAGTGCGAGCAAA-TCCTCTGGATTATNTGTCCTTCCCTATAATTAGCAC-- 621 ********************* ************* ********************** consensus_342#0 CGATTGAGTATGATTCGTTCTCATCACTCAAGGAGCAAGGACATGGTGTAACTGTTGTTC 689 consensus_342#1 ------------------------------------------------------------ consensus_342#0 GCACCCGCATTGAGGGGGGTGCGAAGGCCGTCAGGACTAATGGAACACTGGCGCTGCAAC 749 consensus_342#1 ------------------------------------------------------------ consensus_342#0 ATGTGCGGGCTATCTATTCTCGCAGTTCTGTTTTCTTCTGGTTCGAAGTAGGAGAAAGGT 809 consensus_342#1 ------------------------------------------------------------ consensus_342#0 AGGAATTCATGTAAACCTGTAAGGCCATGGCCATGTATCCTATCCAGTATCAACTCTTGG 869 consensus_342#1 ------------------------------------------------------------ consensus_342#0 CATTGTCTGCCTCCTGTTTGTTGTAACATATGATAAATATTTTCTATTTGGATCAACAGG 929 consensus_342#1 ------------------------------------------------------------ consensus_342#0 GACACTAGTTACAAGTTAACTGCATAAAGTTTGATAATTTCATAAACTTAGCT 982 consensus_342#1 ----------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||