These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3442#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 594 fasta sequence [GCTGAATTGCAGCGACTTCGTTCAATATTTGCTACAAGTGACAGACAGTGGATTGTGGCACAAGTTGAAAATGCTAAACAACAGGCCATACTCTCGATTTTAAAATCACAAGTGTCATCTGACGAGGCTCATATACATAGGGATATTCATTCTCTTAGGAGAAAAGGTTCTGAGCTTGCTGGAGAACTCTCGACTCTTTCTCAAAAAGTACAGGCTTTTGTATCTGAGACTATACCATGCCTCTGCTCAGAACTCGCTCAACTTCAATTTACATATATTTTGCAAGGGGACTACGATTTAAAGGTCATGCGCCAGGAATACTACATTAACAGGCAAAAAACGTTCATCAGTCACTTGGCTAATCAGCTAGCCAGACACCAGTTTCTGAAGATTGCTTGCCAGCTTGAAAGGAAAAACATAGCTAGCGCCTATTCACTGCTTAGAGTAATAGAATCCGAGTTGCAAAGCTACCTATCAGCTGTCAATACCCGTTTGGGCCATTGTACTTCATTAATTCAAGCTGCGACCGATGTGCGTGAGCAAGGTGCAATTGATGACCGTGACACTCTCCTCCATGCCGTACGGGATCTCTTA] [+] EMBL CA998919 [GCTGAATTGCAGCGACTTCGTTCAATATTTGCTACAAGTGACAGACAGTGGATTGTGGCACAAGTTGAAAATGCTAAACAACAGGCCATACTCTCGATTTTAAAATCACAAGTGTCATCTGACGAGGCTCATATACATAGGGATATTCATTCTCTTAGGAGAAAAGGTTCTGAGCTTGCTGGAGAACTCTCGACTCTTTCTCAAAAAGTACAGGCTTTTGTATCTGAGACTATACCATGCCTCTGCTCAGAACTCGCTCAACTTCAATTTACATATATTTTGCAAGGGGACTACGATTTAAAGGTCATGCGCCAGGAATACTACATTAACAGGCAAAAAACGTTCATCAGTCACTTGGCTAATCAGCTAGCCAGACACCAGTTTCTGAAGATTGCTTGCCAGCTTGAAAGGAAAAACATAGCTAGCGCCTATTCACTGCTTAGAGTAATAGAATCCGAGTTGCAAAGCTACCTATCAGCTGTCAATACCCGTTTGGGCCATTGTACTTCATTAATTCAAGCTGCGACCGATGTGCGTGAGCAAGGTGCAATTGATGACCGTGACACTCTCCTCCATGCCGTACGGGATCTCTTA] consensusID : consensus_3442#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 245 fasta sequence [ATGGATCTACTCAAAGCTCCCTCAACTTCATGGATCATATGTTTAGCGCGGGGACTACCATTCAGAGGGAAGGCGCCAGGAATACTACATTATCAGGCAAAAAACGTACATCAATCACTTGGCTAATCGGCTACCCAGACACCAATTTCTGAAGATTGCTTGCCAGCTAGAAAGGAAAAACATAGCTAGCGCCTATTCACTGCTTAGAGTAGTACAATCCGAGTTGCAAAGCTACCTATCATCTG] [+] EMBL CB000457 [ATGGATCTACTCAAAGCTCCCTCAACTTCATGGATCATATGTTTAGCGCGGGGACTACCATTCAGAGGGAAGGCGCCAGGAATACTACATTATCAGGCAAAAAACGTACATCAATCACTTGGCTAATCGGCTACCCAGACACCAATTTCTGAAGATTGCTTGCCAGCTAGAAAGGAAAAACATAGCTAGCGCCTATTCACTGCTTAGAGTAGTACAATCCGAGTTGCAAAGCTACCTATCATCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3442#0 GCTGAATTGCAGCGACTTCGTTCAATATTTGCTACAAGTGACAGACAGTGGATTGTGGCA 60 consensus_3442#1 ------------------------------------------------------------ consensus_3442#0 CAAGTTGAAAATGCTAAACAACAGGCCATACTCTCGATTTTAAAATCACAAGTGTCATCT 120 consensus_3442#1 ------------------------------------------------------------ consensus_3442#0 GACGAGGCTCATATACATAGGGATATTCATTCTCTTAGGAGAAAAGGTTCTGAGCTTGCT 180 consensus_3442#1 ------------------------------------------------------------ consensus_3442#0 GGAGAACTCTCGACTCTTTCTCAAAAAGTACAGGCTTTTGTATCTGAGACTATACCATGC 240 consensus_3442#1 --------------------------------------------------------ATGG 4 *** consensus_3442#0 CTCTGCTCAGAACTCGCTCAACTTCAATTTACATATATTTTGCAAGGGGACTACGATTTA 300 consensus_3442#1 ATCTACTCAAAGCTCCCTCAACTTCATGGATCATATGTTTAGCGCGGGGACTACCATTCA 64 *** **** * *** ********** ***** *** ** ********* *** * consensus_3442#0 AAGGTCATGCGCCAGGAATACTACATTAACAGGCAAAAAACGTTCATCAGTCACTTGGCT 360 consensus_3442#1 GAGGGAAGGCGCCAGGAATACTACATTATCAGGCAAAAAACGTACATCAATCACTTGGCT 124 *** * ******************** ************** ***** ********** consensus_3442#0 AATCAGCTAGCCAGACACCAGTTTCTGAAGATTGCTTGCCAGCTTGAAAGGAAAAACATA 420 consensus_3442#1 AATCGGCTACCCAGACACCAATTTCTGAAGATTGCTTGCCAGCTAGAAAGGAAAAACATA 184 **** **** ********** *********************** *************** consensus_3442#0 GCTAGCGCCTATTCACTGCTTAGAGTAATAGAATCCGAGTTGCAAAGCTACCTATCAGCT 480 consensus_3442#1 GCTAGCGCCTATTCACTGCTTAGAGTAGTACAATCCGAGTTGCAAAGCTACCTATCATCT 244 *************************** ** ************************** ** consensus_3442#0 GTCAATACCCGTTTGGGCCATTGTACTTCATTAATTCAAGCTGCGACCGATGTGCGTGAG 540 consensus_3442#1 G----------------------------------------------------------- 245 * consensus_3442#0 CAAGGTGCAATTGATGACCGTGACACTCTCCTCCATGCCGTACGGGATCTCTTA 594 consensus_3442#1 ------------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||