These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3466#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 793 fasta sequence [ATCGCGTTCCCTTCCGCCGACGGCGAAACTCTCCGGCGCCCCCTCTCCTTCCGTTCCTCTTCGCCTCCTCCATTAATCGGCGTCAACCCACTTCTCCGCCGTGTGTGCGTACGTGCAGGAGCGACTGCTGTGGAGAGCGCGACTCCGGCCGCTGGCGTTGGATGCGCGCGCAGTGCCTTCCGCGTGCGCCCGATTTGCGTCGGCAGCGCCCACTTCGGAGGCCGCTCTGACGAATTCCGGCGCCGCCTTCACGATCCCCGTCCGCGTGCGGCCGAGACCTGCGGCGGCGCCAACCTCGGAGGCCGATTCGTTCCATTCCTGTGCAAGTCTCGTGCGCACGACGAGTACTGCGAAGAACAACCCTTGCCATCACATCCTCAGTATCTGGGGGCGGACGCTCCAGGCAGTGAAGCTGGGACTGGGAGCAGCCGCCGGCGAATGCTTCTCCAAGAGCACCAAGATTCACAGATCGTAGTGGTTCTGGAAAAAAAAAGTCCTATATGGCGAATGTCTGAAGCTAGTGGTTGATGGAAAACAACAGTCCTATGTGTGAAGCTGGTGAGAATATTCAGAGATGCTCGTGTATAGATTATTATCAGTTAGTACTCTGTTTGTGATCTATTTACTCCCTCCGTCCAAAAAAAAAAACTCAACCAAGGAAAGGAGTGTTTTTTGGGATGGATGGAGTATTATGCAAGGTAAGGGCTTGTTTAGTTGGTGAAATAAAAATTTTTGGATGTCACATCAGACGTTTAACCAGATGTTGGAAGGGGTTTTCGGACACGAATGAAAA] [+] EMBL AK099413 [ATCGCGTTCCCTTCCGCCGACGGCGAAACTCTCCGGCGCCCCCTCTCCTTCCGTTCCTCTTCGCCTCCTCCATTAATCGGCGTCAACCCACTTCTCCGCCGTGTGTGCGTACGTGCAGGAGCGACTGCTGTGGAGAGCGCGACTCCGGCCGCTGGCGTTGGATGCGCGCGCAGTGCCTTCCGCGTGCGCCCGATTTGCGTCGGCAGCGCCCACTTCGGAGGCCGCTCTGACGAATTCCGGCGCCGCCTTCACGATCCCCGTCCGCGTGCGGCCGAGACCTGCGGCGGCGCCAACCTCGGAGGCCGATTCGTTCCATTCCTGTGCAAGTCTCGTGCGCACGACGAGTACTGCGAAGAACAACCCTTGCCATCACATCCTCAGTATCTGGGGGCGGACGCTCCAGGCAGTGAAGCTGGGACTGGGAGCAGCCGCCGGCGAATGCTTCTCCAAGAGCACCAAGATTCACAGATCGTAGTGGTTCTGGAAAAAAAAAGTCCTATATGGCGAATGTCTGAAGCTAGTGGTTGATGGAAAACAACAGTCCTATGTGTGAAGCTGGTGAGAATATTCAGAGATGCTCGTGTATAGATTATTATCAGTTAGTACTCTGTTTGTGATCTATTTACTCCCTCCGTCCAAAAAAAAAAACTCAACCAAGGAAAGGAGTGTTTTTTGGGATGGATGGAGTATTATGCAAGGTAAGGGCTTGTTTAGTTGGTGAAATAAAAATTTTTGGATGTCACATCAGACGTTTAACCAGATGTTGGAAGGGGTTTTCGGACACGAATGAAAA] consensusID : consensus_3466#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 779 fasta sequence [TGCAAGTCTCGTGCGCACGACGAGTACTGCGAAGAACAACCCTTGCCATCACATCCTCAGGTTTGCTGTCCGGTTTTTTATTGATTTGCCTTATATTCGTTTAACATTGTTTACCTGCTAAGATAATTGCAAGGCCAACAGTGAGTTGCTTGGGATTAGCTCTGCATTTTTAGGTGAAGGAAATCTGTGTTTCATTTGAGAACAATTAATCCCAAACTTTGGTTGCAGCATGTAGCGATGGTAGTTTTATAGTATATTAGTTTTGGCAGTCTGATCACAGTGTGTATTGAAAATATTTGGTTAAATTTTTCACCAATTAACGTTCCATTTTTTTTTCACAAATTCTTATTTTCAACCCAAGTTCATGTTCGAATAGCAATGTAGTGTGAGCATAAATCCTTGGTAATGAGCAGACATTTGTTTTCTTCTTATGCACGAACTGATTCAGTTTCTATGCTTAGATAGCTCTGAAAAGACCTATATATGATCAATCCGGATGTACACTGGGATATTATACCTTGATTCTTTTATTAACCTTATTTAAGAAACTATATATGATAAAGATTTAGACAGGGGACACTTTGTGAAGGATGCAATTTCAGTCATCTCAAGTATTGAGCTTCAGTTGTGATGTATCCTCAAGCCATAAATGATGTTACTTTGCTAACAGTATCTGGGGGCGGACGCTCCAGGCAGTGAAGCTGGGACTGGGAGCAGCCGCCGGCGAATGCTTCTCCAAGAGCACCAAGATTCACAGATCGTAGTGGTTCTGGAAAAAA] [+] EMBL CB000378 [TGCAAGTCTCGTGCGCACGACGAGTACTGCGAAGAACAACCCTTGCCATCACATCCTCAGGTTTGCTGTCCGGTTTTTTATTGATTTGCCTTATATTCGTTTAACATTGTTTACCTGCTAAGATAATTGCAAGGCCAACAGTGAGTTGCTTGGGATTAGCTCTGCATTTTTAGGTGAAGGAAATCTGTGTTTCATTTGAGAACAATTAATCCCAAACTTTGGTTGCAGCATGTAGCGATGGTAGTTTTATAGTATATTAGTTTTGGCAGTCTGATCACAGTGTGTATTGAAAATATTTGGTTAAATTTTTCACCAATTAACGTTCCATTTTTTTTTCACAAATTCTTATTTTCAACCCAAGTTCATGTTCGAATAGCAATGTAGTGTGAGCATAAATCCTTGGTAATGAGCAGACATTTGTTTTCTTCTTATGCACGAACTGATTCAGTTTCTATGCTTAGATAGCTCTGAAAAGACCTATATATGATCAATCCGGATGTACACTGGGATATTATACCTTGATTCTTTTATTAACCTTATTTAAGAAACTATATATGATAAAGATTTAGACAGGGGACACTTTGTGAAGGATGCAATTTCAGTCATCTCAAGTATTGAGCTTCAGTTGTGATGTATCCTCAAGCCATAAATGATGTTACTTTGCTAACAGTATCTGGGGGCGGACGCTCCAGGCAGTGAAGCTGGGACTGGGAGCAGCCGCCGGCGAATGCTTCTCCAAGAGCACCAAGATTCACAGATCGTAGTGGTTCTGGAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3466#0 -----ATCGCGTTCCCTTC-CGCCGACGGCGAAACTCT-CCGGCGCCCCCTCTCCTTCCG 53 consensus_3466#1 TGCAAGTCTCGTGCGCACGACGAGTACTGCGAAGAACAACCCTTGCCATCACATCCTCAG 60 ** *** * * ** ** ***** * ** *** * * * ** * consensus_3466#0 TTCCTCT-TCGCCTCCTCCATTAATCGGCGTCAACCCACTTCTCCGCCGTGTGTGCGTAC 112 consensus_3466#1 GTTTGCTGTCCGGTTTTTTATTGATTTGCCTTATATTCGTTTAACATTGTTTACCTGCTA 120 * ** ** * * *** ** ** * * ** * ** * * consensus_3466#0 GTGCAGGAGCGA---CTGCTGTGGAGAGCGCGACTCCGGCCGC-TGGCGTTGGATGCGCG 168 consensus_3466#1 AGATAATTGCAAGGCCAACAGTGAGTTGCTTGGGATTAGCTCTGCATTTTTAGGTGAAGG 180 * ** * * * *** ** * ** ** * ** * consensus_3466#0 CGCAGTGCCTTCCGCGTGCGCCCGATTTG-------CGTCGGCAGC-GCCCACTTCGGAG 220 consensus_3466#1 AAATCTGTGTTTCATTTGAGAACAATTAATCCCAAACTTTGGTTGCAGCATGTAGCGATG 240 ** ** * ** * * *** * * ** ** ** ** * consensus_3466#0 GCCGCTCTGACGAATTCCGGCGCCGCCTTCACGATCCCCGTCCGCGTGCGGCCGAGACCT 280 consensus_3466#1 GTAGTTTTATAGTATATTAGTTTTGGCAGTCTGATCACAGT--GTGTATTGAAAATATTT 298 * * * * * ** * * * **** * ** * ** * * * * consensus_3466#0 GCGGCGGCGCCAACCTCGGAGGCCGATTCGTTCCATTCCTGTGCAAGTCTCGTGCGCACG 340 consensus_3466#1 G-GTTAAATTTTTCACCAATTAACGTTCCATTTTTTTTTCACA-AATTCTTATTTTCAAC 356 * * * * ** * * ** ** ** *** * ** consensus_3466#0 ACGAGTAC---TGCGAAGAACAACCCT-TGCCATCACA--TCCTCAGTATCTGG-GGGCG 393 consensus_3466#1 CCAAGTTCATGTTCGAATAGCAATGTAGTGTGAGCATAAATCCTTGGTAATGAGCAGACA 416 * *** * * **** * *** ** * ** * **** *** * * * consensus_3466#0 GACGCTCCAGGCAGTGAAGCTGGGACTGGGAGCAGCCGCCG-GCGAATGCTTCTCCAAGA 452 consensus_3466#1 TTTGTTTTCTTC--TTATGCACGAACTGATT-CAGTTTCTATGCTTAGATAGCTCTGAAA 473 * * * * * ** * **** *** * ** * *** * * consensus_3466#0 GCACCAAGATTCACAGATCGTAGTGGTTCTGGAAAAAAAAAGTCCTATATGGCGAATGTC 512 consensus_3466#1 AGACCTATATAT---GATCAATCCGGATGT---ACACTGGGATATTATACCTTGATTCTT 527 *** * ** **** ** * * * * * **** ** * * consensus_3466#0 TGAAGCTAGTGGTTGATGGAAAACAACA-GTCCTATGTGTGAAGCTGGTGAGAATATTCA 571 consensus_3466#1 TTA--TTAACCTTATTTAAGAAACTATATATGATAAAGATTTAGACAGGGGACACTTTGT 585 * * ** * * **** * * * ** * ** * * * ** consensus_3466#0 GAGATGCTCGTGTATAGATTATTATCAGT-TAGTACTCTGTTTGTGATCTATTTACTCCC 630 consensus_3466#1 GAAGGATGCA-ATTTCAGTCATCTCAAGTATTGAGCTTCAGTTGTGATGTATC--CTCAA 642 ** * * * * ** *** * * ** ******* *** *** consensus_3466#0 TCCGTCCAAAAAAAAAAACTCAACCAAGGAAAGGAGTGTTTTTTGGGATGGATGGAGTAT 690 consensus_3466#1 GCCAT--AAATGATGTTACTTTGCTAACA--------GTATCTGGGGGCGGACGCTCCAG 692 ** * *** * *** * ** ** * * *** *** * * consensus_3466#0 TATGCAAGGTAAGGGCTTGTT-TAGTTGGTGAAATAAAAATTTTTGGATGTCACATCAGA 749 consensus_3466#1 GCAGTGAAGCTGGGACTGGGAGCAGCCGCCGG--CGAATGCTTCTCCAAGA-GCACCAAG 749 * * * ** ** * ** * * ** ** * * * ** ** consensus_3466#0 CGTTTAACCAGATGTTGGAAGGGGTTTTCGGACACGAATGAAAA 793 consensus_3466#1 -ATTCA--CAGA---TCGTAGTGGTTCTGGAAAAAA-------- 779 ** * **** * * ** **** * * * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||