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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3485#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 792 fasta sequence
[TTTGTAAAATAAGTTTCCAANAGGACTNAATGTAAAAAAATCCAGCTACATCTACTGTCTAATTCCNTGTTCTTAAACCCCAATCTCCTTCAAAGGGCACTGCGAGNTCAAAAGAACAGCGAACCAAGCTTACAGAACGATAAAAGGCACCTAGTTCTAGCTAATCACATTCTTAATANTAGGTGATGTCTAATCGTAATACTAGGTTAATATATTTTGGGATGGAGGGAGTAGATTATATTAAGAAACAGCTNTAAAAATGCCCCTCTGGTGCAGACAGTCTGAAACTCTGAATGCANCCCAGCTCAAACATTTACTTTGTAAGTTATAGGGCCTTTAAGAAATATAACAAACTACTATATTTGNGATGGAATATANTATATCAATTGTCCCAGCATAATATGACTTAGTGGATACCTAGNGGNAAGTGCATATAAAATAGAGGTATTATCTAGCATATACAAAAAGGTAATGCNTAGCATAAAGATACACTGTACCACAAATGCTACNCNAAGGATGCCAATTAATCTTACTTCAATGTTGCAAAACAGAGAGAGAAAAAGNCNGCNGTGCTTTTATTCCATTACCAGGGGCCAGCCANGTTAAGAANTCCTTGNCCATAGNCCTCCCAAAGCCAGCNTTNGAAGNATTTGACTGACCCATGCCTGCNGNNGTTTACCTTNNCAACNAAANANANNCTTTTTGTANNCANAGGCGCNCGCCCNCCGCGGCCGGNNGCTCACAANCTTTTTGTTTCCCTTTTANCAGAGGGTTTNATNCGNGCCGCTTGGC]
[+] EMBL CB096537 [TTTGTAAAATAAGTTTCCAANAGGACTNAATGTAAAAAAATCCAGCTACATCTACTGTCTAATTCCNTGTTCTTAAACCCCAATCTCCTTCAAAGGGCACTGCGAGNTCAAAAGAACAGCGAACCAAGCTTACAGAACGATAAAAGGCACCTAGTTCTAGCTAATCACATTCTTAATANTAGGTGATGTCTAATCGTAATACTAGGTTAATATATTTTGGGATGGAGGGAGTAGATTATATTAAGAAACAGCTNTAAAAATGCCCCTCTGGTGCAGACAGTCTGAAACTCTGAATGCANCCCAGCTCAAACATTTACTTTGTAAGTTATAGGGCCTTTAAGAAATATAACAAACTACTATATTTGNGATGGAATATANTATATCAATTGTCCCAGCATAATATGACTTAGTGGATACCTAGNGGNAAGTGCATATAAAATAGAGGTATTATCTAGCATATACAAAAAGGTAATGCNTAGCATAAAGATACACTGTACCACAAATGCTACNCNAAGGATGCCAATTAATCTTACTTCAATGTTGCAAAACAGAGAGAGAAAAAGNCNGCNGTGCTTTTATTCCATTACCAGGGGCCAGCCANGTTAAGAANTCCTTGNCCATAGNCCTCCCAAAGCCAGCNTTNGAAGNATTTGACTGACCCATGCCTGCNGNNGTTTACCTTNNCAACNAAANANANNCTTTTTGTANNCANAGGCGCNCGCCCNCCGCGGCCGGNNGCTCACAANCTTTTTGTTTCCCTTTTANCAGAGGGTTTNATNCGNGCCGCTTGGC]
consensusID : consensus_3485#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 743 fasta sequence
[TATCGGAGCCAGCATCGTTAGCGAGACGTTGGACCTCGGCACCAGTAAGTTTGTTTTTTCAGGGGTCTGTTTGTAAAATAAGTTTCCAAAAAGGACTAAATGTAAAAAAATCCAGCTACATCTACTGTCTAATTCCATGTTCTTAAACCCCAATCTCCTTCAAAGGGCACTGCGAGTTCAAAAGAACAGCGAACCAAGCTTACAGAACGATAAAAGGCACCTAGTTCTAGCTAATCACATTCTTAATAATAGGTGATGTCTAATCGTAATACTAGGTTAATATATTTTGGGATGGAGGGAGTAGATTATATTAAGAAACAGCTTTAAAAATGCCCCTCTGGTGCAGACAGTCTGAAACTCTGAATGCAACCCAGCTCAAACATTTACTTTGTAAGTTATAGGGTCTTTAAGAAATTATAAGAAACTAATATATTTGTGATGGAATATAGTATATCAATTGTCCCAGCATAATATGACTTAGTGGATACCTAGTGGAAAGTGCATATAAAATAGAGGTATTATCTAGCATATACAAAAGGTAATGTATAGCATAAAGATACACTGTACCACAAATGTTACAAAAGGATGCAATTAATCTTACTTCAATGTTGTAAAACAGAGAGAGAAAAAGTCGGCGTGCTTTTATTNCATCACCAGGGCCAGTCAAGNTAAGAAGTCCTTGCCCATAGACTCCCAAAGCAGCATTCGAAGATATGACTGACCCATGCTGTAGTAGNTACATT]
[+] EMBL CB096849 [TATCGGAGCCAGCATCGTTAGCGAGACGTTGGACCTCGGCACCAGTAAGTTTGTTTTTTCAGGGGTCTGTTTGTAAAATAAGTTTCCAAAAAGGACTAAATGTAAAAAAATCCAGCTACATCTACTGTCTAATTCCATGTTCTTAAACCCCAATCTCCTTCAAAGGGCACTGCGAGTTCAAAAGAACAGCGAACCAAGCTTACAGAACGATAAAAGGCACCTAGTTCTAGCTAATCACATTCTTAATAATAGGTGATGTCTAATCGTAATACTAGGTTAATATATTTTGGGATGGAGGGAGTAGATTATATTAAGAAACAGCTTTAAAAATGCCCCTCTGGTGCAGACAGTCTGAAACTCTGAATGCAACCCAGCTCAAACATTTACTTTGTAAGTTATAGGGTCTTTAAGAAATTATAAGAAACTAATATATTTGTGATGGAATATAGTATATCAATTGTCCCAGCATAATATGACTTAGTGGATACCTAGTGGAAAGTGCATATAAAATAGAGGTATTATCTAGCATATACAAAAGGTAATGTATAGCATAAAGATACACTGTACCACAAATGTTACAAAAGGATGCAATTAATCTTACTTCAATGTTGTAAAACAGAGAGAGAAAAAGTCGGCGTGCTTTTATTNCATCACCAGGGCCAGTCAAGNTAAGAAGTCCTTGCCCATAGACTCCCAAAGCAGCATTCGAAGATATGACTGACCCATGCTGTAGTAGNTACATT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3485#0 ------------------------------------------------------------
consensus_3485#1 TATCGGAGCCAGCATCGTTAGCGAGACGTTGGACCTCGGCACCAGTAAGTTTGTTTTTTC 60
consensus_3485#0 ---------TTTGTAAAATAAGTTTCCAANA-GGACTNAATGTAAAAAAATCCAGCTACA 50
consensus_3485#1 AGGGGTCTGTTTGTAAAATAAGTTTCCAAAAAGGACTAAATGTAAAAAAATCCAGCTACA 120
******************** * ***** **********************
consensus_3485#0 TCTACTGTCTAATTCCNTGTTCTTAAACCCCAATCTCCTTCAAAGGGCACTGCGAGNTCA 110
consensus_3485#1 TCTACTGTCTAATTCCATGTTCTTAAACCCCAATCTCCTTCAAAGGGCACTGCGAGTTCA 180
**************** *************************************** ***
consensus_3485#0 AAAGAACAGCGAACCAAGCTTACAGAACGATAAAAGGCACCTAGTTCTAGCTAATCACAT 170
consensus_3485#1 AAAGAACAGCGAACCAAGCTTACAGAACGATAAAAGGCACCTAGTTCTAGCTAATCACAT 240
************************************************************
consensus_3485#0 TCTTAATANTAGGTGATGTCTAATCGTAATACTAGGTTAATATATTTTGGGATGGAGGGA 230
consensus_3485#1 TCTTAATAATAGGTGATGTCTAATCGTAATACTAGGTTAATATATTTTGGGATGGAGGGA 300
******** ***************************************************
consensus_3485#0 GTAGATTATATTAAGAAACAGCTNTAAAAATGCCCCTCTGGTGCAGACAGTCTGAAACTC 290
consensus_3485#1 GTAGATTATATTAAGAAACAGCTTTAAAAATGCCCCTCTGGTGCAGACAGTCTGAAACTC 360
*********************** ************************************
consensus_3485#0 TGAATGCANCCCAGCTCAAACATTTACTTTGTAAGTTATAGGGCCTTTAAGAAAT-ATAA 349
consensus_3485#1 TGAATGCAACCCAGCTCAAACATTTACTTTGTAAGTTATAGGGTCTTTAAGAAATTATAA 420
******** ********************************** *********** ****
consensus_3485#0 CAAACTACTATATTTGNGATGGAATATANTATATCAATTGTCCCAGCATAATATGACTTA 409
consensus_3485#1 GAAACTAATATATTTGTGATGGAATATAGTATATCAATTGTCCCAGCATAATATGACTTA 480
****** ******** *********** *******************************
consensus_3485#0 GTGGATACCTAGNGGNAAGTGCATATAAAATAGAGGTATTATCTAGCATATACAAAAAGG 469
consensus_3485#1 GTGGATACCTAGTGGAAAGTGCATATAAAATAGAGGTATTATCTAGCATATACAAAA-GG 539
************ ** ***************************************** **
consensus_3485#0 TAATGCNTAGCATAAAGATACACTGTACCACAAATGCTACNCNAAGGATGCCAATTAATC 529
consensus_3485#1 TAATGTATAGCATAAAGATACACTGTACCACAAATGTTACA-AAAGGATGC-AATTAATC 597
***** ***************************** *** ******** ********
consensus_3485#0 TTACTTCAATGTTGCAAAACAGAGAGAGAAAAAGNCNGCNGTGCTTTTATTCCATTACCA 589
consensus_3485#1 TTACTTCAATGTTGTAAAACAGAGAGAGAAAAAGTCGGCG-TGCTTTTATTNCATCACCA 656
************** ******************* * ** ********** *** ****
consensus_3485#0 GGGGCCAGCCANGTTAAGAANTCCTTGNCCATAGNCCTCCCAAAGCCAGCNTTNGAAGNA 649
consensus_3485#1 GGG-CCAGTCAAGNTAAGAAGTCCTTGCCCATAGAC-TCCCAAAGC-AGCATTCGAAGA- 712
*** **** ** * ****** ****** ****** * ********* *** ** ****
consensus_3485#0 TTTGACTGACCCATGCCTGCNGNNGTTTACCTTNNCAACNAAANANANNCTTTTTGTANN 709
consensus_3485#1 TATGACTGACCCATGC-TGTAGTAGNT-ACATT--------------------------- 743
* ************** ** * * * ** **
consensus_3485#0 CANAGGCGCNCGCCCNCCGCGGCCGGNNGCTCACAANCTTTTTGTTTCCCTTTTANCAGA 769
consensus_3485#1 ------------------------------------------------------------
consensus_3485#0 GGGTTTNATNCGNGCCGCTTGGC 792
consensus_3485#1 -----------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||