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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3487#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 712 fasta sequence
[GACAAGAATGGCATAACATCAGTCATGGCATCCGAGTACAGAAGGACATGAGATCTCACCGTGTTCCTACTCCAATTTGTGATGATGGTGATGGCAAGAGCATAAGAGAATGGTGCAAATAAAGCTAGGCTAGGTTCTTACCCATGGATACGCCTACATCATCTATGCTAAAATTCACTCCGCTAAGCCAGAAGCGTTTTCCGTAGCAAGCTTCCCCTGCGTGCTAACTCCAGCTATGGCATAAAAAACAACTCGATGATCATCACTCCAGACATGCAGTTCTCAGGGAACAAGCTCCTGCAAAAAACAAAACAGCACGTCATCTGACACTGAAACAGAATTACCAGCCCCTGTGCATTCGAACATCAAAAAAACAAGTAAATTTGCTATCCGTTCCTTTGTCATTCAGAAAAAGGTGTAGGTGTTCCCAAACGCACGTTCGAAGACCTGTGCTTTTGTGTGAAAAATGTCCAAGTGACATCTGAAATCAAGGAATACATCTCAGACATCAAACAGTACACCTCGCCCGTTCAAGCAAATTCTATGCTGTCACCATGAACAAAACATTCATCGAGCAAGATAGAGAGATTACTAAGAAAACTACATACAGCCACTTATGCGGCGCAGAACAGCCATCGATNATCAGGTCNAAACCAGCCAGCCAGAAGATAACATCCCATCTTCCNATCAGTCTGGCATCCTTCCAATTTCT]
[+] EMBL CB096543 [GACAAGAATGGCATAACATCAGTCATGGCATCCGAGTACAGAAGGACATGAGATCTCACCGTGTTCCTACTCCAATTTGTGATGATGGTGATGGCAAGAGCATAAGAGAATGGTGCAAATAAAGCTAGGCTAGGTTCTTACCCATGGATACGCCTACATCATCTATGCTAAAATTCACTCCGCTAAGCCAGAAGCGTTTTCCGTAGCAAGCTTCCCCTGCGTGCTAACTCCAGCTATGGCATAAAAAACAACTCGATGATCATCACTCCAGACATGCAGTTCTCAGGGAACAAGCTCCTGCAAAAAACAAAACAGCACGTCATCTGACACTGAAACAGAATTACCAGCCCCTGTGCATTCGAACATCAAAAAAACAAGTAAATTTGCTATCCGTTCCTTTGTCATTCAGAAAAAGGTGTAGGTGTTCCCAAACGCACGTTCGAAGACCTGTGCTTTTGTGTGAAAAATGTCCAAGTGACATCTGAAATCAAGGAATACATCTCAGACATCAAACAGTACACCTCGCCCGTTCAAGCAAATTCTATGCTGTCACCATGAACAAAACATTCATCGAGCAAGATAGAGAGATTACTAAGAAAACTACATACAGCCACTTATGCGGCGCAGAACAGCCATCGATNATCAGGTCNAAACCAGCCAGCCAGAAGATAACATCCCATCTTCCNATCAGTCTGGCATCCTTCCAATTTCT]
consensusID : consensus_3487#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 670 fasta sequence
[GAATTACCAGCCCCTGTGCATTCGAACATCAAAAAAACAAAAAAAGGTGTAGGTGTTCCCAAACGCACGTTCGAAGACCTGTGCTTTTGTGTGAAAAATGTCCAAGTGACATCTGAAATCAAGGAATACATCTCAGACATCAAACAGTACACCTCGCCCGTTCAAGCAAATTCTATGCTGTCACCATGAACAAAACATTCATCGAGCAAGATAGAGTACTTTGCCAGAGATTACTAAGAAAACTACATACAGCCACTTATGCGGCGCAGAACAGCCATCGATAATCAGGTCTAAACAGCAGGTGGTGATCCAATGACGATGTTCCTTTGCATCTCGACAGATGGTTATTACAATCTAAAAGAAAGAATGGACTTTGTTTGCAGCAGAAAATAACATCCATCTCCAATCAGTCTGCATCTTCCATTTCTACAAGAAAATTCACATGGAAGCAACGATAAATGCCCTGTGAAAGCTATATCGCGAACCTATGTTGTAATATGCTAATCCTTTTGGTAACAGGAAATTACCATATTTCTGTCTCATGGACATGGTGTTCCAAGCTGTTCTGTGCCCATTGCCATGCTAATTAGGTCTGCATGGTAGCTCTTACGGTGCCTGCTAAACTACATTGTAAATTGTAAAAACCATCTATGTATACGGTTACTCTTAA]
[-] EMBL CB632537 [GAATTACCAGCCCCTGTGCATTCGAACATCAAAAAAACAAAAAAAGGTGTAGGTGTTCCCAAACGCACGTTCGAAGACCTGTGCTTTTGTGTGAAAAATGTCCAAGTGACATCTGAAATCAAGGAATACATCTCAGACATCAAACAGTACACCTCGCCCGTTCAAGCAAATTCTATGCTGTCACCATGAACAAAACATTCATCGAGCAAGATAGAGTACTTTGCCAGAGATTACTAAGAAAACTACATACAGCCACTTATGCGGCGCAGAACAGCCATCGATAATCAGGTCTAAACAGCAGGTGGTGATCCAATGACGATGTTCCTTTGCATCTCGACAGATGGTTATTACAATCTAAAAGAAAGAATGGACTTTGTTTGCAGCAGAAAATAACATCCATCTCCAATCAGTCTGCATCTTCCATTTCTACAAGAAAATTCACATGGAAGCAACGATAAATGCCCTGTGAAAGCTATATCGCGAACCTATGTTGTAATATGCTAATCCTTTTGGTAACAGGAAATTACCATATTTCTGTCTCATGGACATGGTGTTCCAAGCTGTTCTGTGCCCATTGCCATGCTAATTAGGTCTGCATGGTAGCTCTTACGGTGCCTGCTAAACTACATTGTAAATTGTAAAAACCATCTATGTATACGGTTACTCTTAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3487#0 GACAAGAATGGCATAACATCAGTCATGGCATCCGAGTA-CAGAAGGACATGAGATCTCAC 59
consensus_3487#1 -----GAATTAC-CAGCCCCTGT----GCATTCGAACATCAAAAAAACAAAAAAAGGTGT 50
**** * * * * ** **** *** * ** ** *** * *
consensus_3487#0 CG-TGTTCCTACTCCAATTTGTGATGATGGTGATGGCAAGAGCATAAGAGAATGGTGCAA 118
consensus_3487#1 AGGTGTTCCCAAACGCACGTTCGAAGAC-----CTGTGCTTTTGTGTGAAAAATGTCCAA 105
* ****** * * * * ** ** * * ** ** ** ***
consensus_3487#0 ATAAAGCTAGGCTAGGTTCTTACCCATGGATACGCCTACATCATCTA-TGCTAAAATTCA 177
consensus_3487#1 GTGACATCTGAA---------ATCAAGGAATACATCTCAGACATCAAACAGTACACCTCG 156
* * * * * * * **** ** **** * ** * **
consensus_3487#0 CTCCGCTAAGCCAG----AAGCGTTTTCCGTAGCAAGCTTCCCCTGCGTGCTAACTCCAG 233
consensus_3487#1 CCCGTTCAAGCAAATTCTATGCTGTCACCATGAACAAAACATTCATCGAGCAAGATAGAG 216
* * **** * * ** * ** * * * ** ** * * **
consensus_3487#0 CTATGGCATAAAAAACAACTCGATGATCATCACTCCAGACATGCAGTTCTCAGGGAACAA 293
consensus_3487#1 -TACTTTGCCAGAGATTACTAAGAAAACTACA-TACAGCCACTTATGCGGCGCAGAACAG 274
** * * * *** * * ** * *** ** * * *****
consensus_3487#0 GCTCCTGCAA--AAAACAAAACAGCACGTCATCTGACACTGAAACAGAATTACCAGCCCC 351
consensus_3487#1 CCATCGATAATCAGGTCTAAACAGCAGGTGGTGATCCAATGACG-ATGTTCCTTTGCATC 333
* * ** * * ******** ** * ** *** * * ** *
consensus_3487#0 TGTGCATTCGAACATCAAAAAAACAAGTAAATTTGCTATCCGTTCCTTTGTCATTCAGAA 411
consensus_3487#1 TCGACAGATGGTTATTACAATCTAAAAGAAAGA----ATGGACTTTGTTTGCAG-CAGAA 388
* ** * ** * ** ** *** ** * ** ** *****
consensus_3487#0 AAAGGTGTAGGTGTTCCCAAACGCACGTTCGAAGACCTGTGCTTTTGTGTGAAAAATGTC 471
consensus_3487#1 AATAACATC--CATCTCCAATCA---GTCTGCAT-CTTCCATTTCTACAAGAAAA---TT 439
** * * **** * ** * * * * ** * ***** *
consensus_3487#0 CAAGTGACATCTGAAATCAAGGAATACATCTCAGACATCAAACAGTACACCTCGCCCGTT 531
consensus_3487#1 CACATGGAAGC----AACGATAAATGCCCTGTGAAAGCTATATCGCGAACCTATGTTGTA 495
** ** * * * * * *** * * * * * **** **
consensus_3487#0 -CAAGCAAATTCTATGCTGTCACCATGAACAAAACATTCATCGAGCAAGATAGAGAGATT 590
consensus_3487#1 ATATGCTAATCCTTT--TGGTAACAGGAAATTACCATATTTCTGTCTC-ATGGACATGGT 552
* ** *** ** * ** * ** *** * *** ** * ** ** * *
consensus_3487#0 ACTAAGAAAACTACATACAGCCACTTATGCGGCGCAGAACAGCCATCGATNATCAGGTCN 650
consensus_3487#1 GTTCC--AAGCTG--TTCTGTGCCCATTGCCATGCTAATTAGGTCTGCATGGT-AGCTCT 607
* ** ** * * * * *** ** * ** * ** * ** **
consensus_3487#0 AAACCAGCCAGCCAGAAGATAACATCCCATCTTCCNATCAGTCTGGCATCCTTCCAATTT 710
consensus_3487#1 TACGGTGCCTGCTAAACTACATTGTAAATTGTAAAAACCATCTATGTATACGGTTACTCT 667
* *** ** * * * * * * * * ** * ** * * * *
consensus_3487#0 CT- 712
consensus_3487#1 TAA 670
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||