These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3525#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 724 fasta sequence [CGCTGCGCCACGCGCCGGGTGGTGCAGTCTCGGTGCCACACGGAGGAGGTGGAGCCCGGCCGCTTCGTCCGCAAGTGCGAGAAGACCGAGCAGCTCCTCCGCGACTGCGTCGGCAGGCCCTCTGAACTGGTGGAATCAAAAACTGAAAATACTGAAGAAGACGTCACAGATGAAATGAAAAGCGGGTCACTATCTCTTGGTTTTCCGACCAATGAGCCCTTTGCATTTCCTGGACTTCGCAGTGACATAGAAGCTCTTGAGAAAGGCCTTTTCGGGAGCATTGGTAGCTTTCTGGATGATGCTGAGAGGATGACCAATGATTTCTTGAAGTCTTTTGGTGTCCCTTCCATCAATGAAAGGGAGTCGAGCTCATTTGATGGACAACCTACAGGCAGGCACATTGGTGGACAACCTGCAGGCAGGCACATTGAGGAAGGTACTGCAAAGGACACTAAACAGAACGACTACGCAGAATTCAGCAGCAAGATTACAGATGTGTAAGGATCTACAGTTAGCTGACGCACCTTTGGGAGCAGCTTGCCAATTTTGTATTTTGAACATCTCCATGGTTGTAATTGGAAGGGGAAGGATCAGTTTGACTGTTTTATAAGCAGAGTCGTCTGAAGTCTGAAGTGTTGCGCTTATAAGAACAATTGTGTATATTACTGTTTTAGATAAGCCTGTTTGTGTTCCTCAACAATGAGATCAATTATGGATGGTTTTT] [+] EMBL AK106172 [CGCTGCGCCACGCGCCGGGTGGTGCAGTCTCGGTGCCACACGGAGGAGGTGGAGCCCGGCCGCTTCGTCCGCAAGTGCGAGAAGACCGAGCAGCTCCTCCGCGACTGCGTCGGCAGGCCCTCTGAACTGGTGGAATCAAAAACTGAAAATACTGAAGAAGACGTCACAGATGAAATGAAAAGCGGGTCACTATCTCTTGGTTTTCCGACCAATGAGCCCTTTGCATTTCCTGGACTTCGCAGTGACATAGAAGCTCTTGAGAAAGGCCTTTTCGGGAGCATTGGTAGCTTTCTGGATGATGCTGAGAGGATGACCAATGATTTCTTGAAGTCTTTTGGTGTCCCTTCCATCAATGAAAGGGAGTCGAGCTCATTTGATGGACAACCTACAGGCAGGCACATTGGTGGACAACCTGCAGGCAGGCACATTGAGGAAGGTACTGCAAAGGACACTAAACAGAACGACTACGCAGAATTCAGCAGCAAGATTACAGATGTGTAAGGATCTACAGTTAGCTGACGCACCTTTGGGAGCAGCTTGCCAATTTTGTATTTTGAACATCTCCATGGTTGTAATTGGAAGGGGAAGGATCAGTTTGACTGTTTTATAAGCAGAGTCGTCTGAAGTCTGAAGTGTTGCGCTTATAAGAACAATTGTGTATATTACTGTTTTAGATAAGCCTGTTTGTGTTCCTCAACAATGAGATCAATTATGGATGGTTTTT] consensusID : consensus_3525#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 169 fasta sequence [ACCGACATGGACTGAGGAGTAGAAAAATTGTGTATATTACTGTTTTAGATAAGCCTGTTTGTGTTCCTCAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF321907 [ACCGACATGGACTGAGGAGTAGAAAAATTGTGTATATTACTGTTTTAGATAAGCCTGTTTGTGTTCCTCAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3525#0 CGCTGCGCCACGCGCCGGGTGGTGCAGTCTCGGTGCCACACGGAGGAGGTGGAGCCCGGC 60 consensus_3525#1 ------------------------------------------------------------ consensus_3525#0 CGCTTCGTCCGCAAGTGCGAGAAGACCGAGCAGCTCCTCCGCGACTGCGTCGGCAGGCCC 120 consensus_3525#1 ------------------------------------------------------------ consensus_3525#0 TCTGAACTGGTGGAATCAAAAACTGAAAATACTGAAGAAGACGTCACAGATGAAATGAAA 180 consensus_3525#1 ------------------------------------------------------------ consensus_3525#0 AGCGGGTCACTATCTCTTGGTTTTCCGACCAATGAGCCCTTTGCATTTCCTGGACTTCGC 240 consensus_3525#1 ------------------------------------------------------------ consensus_3525#0 AGTGACATAGAAGCTCTTGAGAAAGGCCTTTTCGGGAGCATTGGTAGCTTTCTGGATGAT 300 consensus_3525#1 ------------------------------------------------------------ consensus_3525#0 GCTGAGAGGATGACCAATGATTTCTTGAAGTCTTTTGGTGTCCCTTCCATCAATGAAAGG 360 consensus_3525#1 ------------------------------------------ACCGACATGGACTGAGGA 18 * *** * * * consensus_3525#0 GAGTCGAGCTCATTTGATGGACAACCTACAGGCAGGCACATTGGTGGACAACCTGCAGGC 420 consensus_3525#1 GTAGAAAAATTGTGTATATTACTGTTT-TAGATAAGCCTGTTTGTGTTCC-TCAACAAAA 76 * * * * * ** * ** * ** ** *** * * ** consensus_3525#0 AGGCACATTGAGGAAGGTACTGCAAAGGACACTAAACAGAACGACTACGCAGAATTCAGC 480 consensus_3525#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 136 * * * * ** * *** * * *** * ** * * * ** * consensus_3525#0 AGCAAGATTACAGATGTGTAAGGATCTACAGTTAGCTGACGCACCTTTGGGAGCAGCTTG 540 consensus_3525#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA--------------------------- 169 * ** * * * * ** * * * consensus_3525#0 CCAATTTTGTATTTTGAACATCTCCATGGTTGTAATTGGAAGGGGAAGGATCAGTTTGAC 600 consensus_3525#1 ------------------------------------------------------------ consensus_3525#0 TGTTTTATAAGCAGAGTCGTCTGAAGTCTGAAGTGTTGCGCTTATAAGAACAATTGTGTA 660 consensus_3525#1 ------------------------------------------------------------ consensus_3525#0 TATTACTGTTTTAGATAAGCCTGTTTGTGTTCCTCAACAATGAGATCAATTATGGATGGT 720 consensus_3525#1 ------------------------------------------------------------ consensus_3525#0 TTTT 724 consensus_3525#1 ---- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||