These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3552#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 616 fasta sequence [GGAATCACTTTACAGAGCAAGTTCTGCTTTATCCTCAGCATGTCATTGTTTCAGACCAAAACTACACCTGCACTTAGTAAACTACATGCCTGCTCTTTCCGGTGGCAAAATTGAAGCGACCCAGGCTTCTGCATTCCGTAATCTGGGCGCTGTGTTTTCCATTTTCTACAGAAAAAATAGCAACAGAGTATCGAACAGGAACTTCTGTACAGCATACAAGTACAACACGCCGGGGCCTTTTGCAATCGTCCCTTCGGGAGAAAAAAGAGAAGGGAATAGCTACACCTCCGGTCCTGACGCAAAGAGGTTGACAAGGCCTCGGAAAGCTTGAACAGATACCTCACAGGCCTGAAGAAGTTCTCCGTCCAAGTTCCAGACACTTTCGTCATGTGACGATATAAAAGTAAATGCTTGTGTCTTATGATGTTCGACAAACTTGAAGCTCAGAGGATCTGAGCCCTTCTTGGTAAATTGTGTTAGATGCCTGCAGATAAGTCAGAACTCATAAGAACATACTCTGCAAACAGGGATAGTGACCAAATCTAGAAACTAATTTCTGAGTGAATTTAGCATGTTCTTTAGTTTGTGAAAACTACATAAAAGTGGAAATATACTA] [+] EMBL CB620016 [GGAATCACTTTACAGAGCAAGTTCTGCTTTATCCTCAGCATGTCATTGTTTCAGACCAAAACTACACCTGCACTTAGTAAACTACATGCCTGCTCTTTCCGGTGGCAAAATTGAAGCGACCCAGGCTTCTGCATTCCGTAATCTGGGCGCTGTGTTTTCCATTTTCTACAGAAAAAATAGCAACAGAGTATCGAACAGGAACTTCTGTACAGCATACAAGTACAACACGCCGGGGCCTTTTGCAATCGTCCCTTCGGGAGAAAAAAGAGAAGGGAATAGCTACACCTCCGGTCCTGACGCAAAGAGGTTGACAAGGCCTCGGAAAGCTTGAACAGATACCTCACAGGCCTGAAGAAGTTCTCCGTCCAAGTTCCAGACACTTTCGTCATGTGACGATATAAAAGTAAATGCTTGTGTCTTATGATGTTCGACAAACTTGAAGCTCAGAGGATCTGAGCCCTTCTTGGTAAATTGTGTTAGATGCCTGCAGATAAGTCAGAACTCATAAGAACATACTCTGCAAACAGGGATAGTGACCAAATCTAGAAACTAATTTCTGAGTGAATTTAGCATGTTCTTTAGTTTGTGAAAACTACATAAAAGTGGAAATATACTA] consensusID : consensus_3552#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 575 fasta sequence [CTTTTTTTTTTTTTGAAACGGAGAATTGGAATCACTTTACAGAGCAAGTTCTGCTTTATTACACAGCATGTCATTGTTTCAAACCAAAACTACTCCTGCACTTAGGGGGTGTTTGGGAACTTAAAGACTAAATTTAGTCTTTCTCACAAAATTATAAGTCCCTATGGTAGGGACTTATATTTTTGTGAGAGGGACTAAAGTTTAGTTCCACTTTAGTCCCTCCAACCAAACACCACCTTAGTAAACTACATGCCTGCTCTTTCCGGTGGCAAAATTGAAGCGACCCAGGCTTCTGCATTCCGTAATCTGGGCGCTGTGTTTTCCATTTTCTACAGAAAAAATAGCAACAGAGTATCGAACAGGAACTTCTGTACAGCATACAAGTACAACACGCCGGGGCCTTTTGCAATCGTCCCTTCGGGAGAAAAAAGAGAAGGGAATAGCTACACCTCCGGTCCTGACGCAAAGAGGTTGACAAGGCCTCGGAAAGCTTGAACAGATACCTCACAGGCCTGAAGAAGTTCTCCGTCCAAGTTCCAGACACTTTCGTCATGTGACGATATAAAAGTAAATGC] [+] EMBL CB637886 [CTTTTTTTTTTTTTGAAACGGAGAATTGGAATCACTTTACAGAGCAAGTTCTGCTTTATTACACAGCATGTCATTGTTTCAAACCAAAACTACTCCTGCACTTAGGGGGTGTTTGGGAACTTAAAGACTAAATTTAGTCTTTCTCACAAAATTATAAGTCCCTATGGTAGGGACTTATATTTTTGTGAGAGGGACTAAAGTTTAGTTCCACTTTAGTCCCTCCAACCAAACACCACCTTAGTAAACTACATGCCTGCTCTTTCCGGTGGCAAAATTGAAGCGACCCAGGCTTCTGCATTCCGTAATCTGGGCGCTGTGTTTTCCATTTTCTACAGAAAAAATAGCAACAGAGTATCGAACAGGAACTTCTGTACAGCATACAAGTACAACACGCCGGGGCCTTTTGCAATCGTCCCTTCGGGAGAAAAAAGAGAAGGGAATAGCTACACCTCCGGTCCTGACGCAAAGAGGTTGACAAGGCCTCGGAAAGCTTGAACAGATACCTCACAGGCCTGAAGAAGTTCTCCGTCCAAGTTCCAGACACTTTCGTCATGTGACGATATAAAAGTAAATGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3552#0 ------------------------------------------------------------ consensus_3552#1 CTTTTTTTTTTTTTGAAACGGAGAATTGGAATCACTTTACAGAGCAAGTTCTGCTTTATT 60 consensus_3552#0 ------------------------------------------------------------ consensus_3552#1 ACACAGCATGTCATTGTTTCAAACCAAAACTACTCCTGCACTTAGGGGGTGTTTGGGAAC 120 consensus_3552#0 ----------------------------------GGAATCACTTTACAGAGCAAGTTCTG 26 consensus_3552#1 TTAAAGACTAAATTTAGTCTTTCTCACAAAATTATAAGTCCCTATGGTAGGGACTTATAT 180 * ** ** * * * * consensus_3552#0 CTTTAT--------CCTCAGCATGTCATTGTTTCAGACCAA--AACTACACCTGCACTTA 76 consensus_3552#1 TTTTGTGAGAGGGACTAAAGTTTAGTTCCACTTTAGTCCCTCCAACCAAACACCACCTTA 240 *** * * ** * ** ** ** *** * ** **** consensus_3552#0 GTAAACTACATGCCTGCTCTTTCCGGTGGCAAAATTGAAGCGACCCAGGCTTCTGCATTC 136 consensus_3552#1 GTAAACTACATGCCTGCTCTTTCCGGTGGCAAAATTGAAGCGACCCAGGCTTCTGCATTC 300 ************************************************************ consensus_3552#0 CGTAATCTGGGCGCTGTGTTTTCCATTTTCTACAGAAAAAATAGCAACAGAGTATCGAAC 196 consensus_3552#1 CGTAATCTGGGCGCTGTGTTTTCCATTTTCTACAGAAAAAATAGCAACAGAGTATCGAAC 360 ************************************************************ consensus_3552#0 AGGAACTTCTGTACAGCATACAAGTACAACACGCCGGGGCCTTTTGCAATCGTCCCTTCG 256 consensus_3552#1 AGGAACTTCTGTACAGCATACAAGTACAACACGCCGGGGCCTTTTGCAATCGTCCCTTCG 420 ************************************************************ consensus_3552#0 GGAGAAAAAAGAGAAGGGAATAGCTACACCTCCGGTCCTGACGCAAAGAGGTTGACAAGG 316 consensus_3552#1 GGAGAAAAAAGAGAAGGGAATAGCTACACCTCCGGTCCTGACGCAAAGAGGTTGACAAGG 480 ************************************************************ consensus_3552#0 CCTCGGAAAGCTTGAACAGATACCTCACAGGCCTGAAGAAGTTCTCCGTCCAAGTTCCAG 376 consensus_3552#1 CCTCGGAAAGCTTGAACAGATACCTCACAGGCCTGAAGAAGTTCTCCGTCCAAGTTCCAG 540 ************************************************************ consensus_3552#0 ACACTTTCGTCATGTGACGATATAAAAGTAAATGCTTGTGTCTTATGATGTTCGACAAAC 436 consensus_3552#1 ACACTTTCGTCATGTGACGATATAAAAGTAAATGC------------------------- 575 *********************************** consensus_3552#0 TTGAAGCTCAGAGGATCTGAGCCCTTCTTGGTAAATTGTGTTAGATGCCTGCAGATAAGT 496 consensus_3552#1 ------------------------------------------------------------ consensus_3552#0 CAGAACTCATAAGAACATACTCTGCAAACAGGGATAGTGACCAAATCTAGAAACTAATTT 556 consensus_3552#1 ------------------------------------------------------------ consensus_3552#0 CTGAGTGAATTTAGCATGTTCTTTAGTTTGTGAAAACTACATAAAAGTGGAAATATACTA 616 consensus_3552#1 ------------------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||