These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3567#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 765 fasta sequence [CGACCGCGCGGAGTTGATTCGATTCCGGGTGTCGCCGCCGCTGGCCATGGGGATAACGCTCGAGATGAACCGGGTCATGCCCACCCGGCGGAGGCGGCAGCGCCGTCGCCGCCGGCGAAACCGACACCGCTATAGATCAATTGCTAAATTGGGTAAAAGGAAATTCTCGCCCTCCCAACAAGATGATGATTCTCAGGGTGCTAAAAGAATGAAAAATTCAGGGATGTTGCTTTCAAAGGACATCTGGCGCCGTATACATTGCCTGATGCCAATGCGAGATGCGGCTCGTGTTGCATGTGTGTCTCGTGCCTTTCTAAATTCCTGGTTATGTTATCCAAACCTCACCTTTAACAAGGATACGCTGGGATTGGATGAACATGTTTGTGAGACAGATTTCATCAGCAAAGTTGACCACATTCTTAAAAGACACTCGGGCACTTGTGTGAAGACATTCAAGCTTGAAGTCCCGTATGAGCTAGATGTCTGTGACCATGTTGATCGTTGGCTTCAATTTGCTATTACACCAGCGATCGAAGAACTCACTCTTACGCTGTATGGAACTGCTCAAAAGTACAATTTCCCATGCTCACTTCTATCTGATGGGATGGCAGATTCTATTCGGATTCTTGATCTTGGCCATTGCGCCTTCTGTCCCACAATCGAACCTGGTTCATGGAGAAGCCTTAAAAGGCTATGTTTGTCTTTTGTGCGTATCACGGAGGATGATTTANGGTGCCTTCTTTTGAATTCGTTGGCTCTCGAGGG] [+] EMBL CB621044 [CGACCGCGCGGAGTTGATTCGATTCCGGGTGTCGCCGCCGCTGGCCATGGGGATAACGCTCGAGATGAACCGGGTCATGCCCACCCGGCGGAGGCGGCAGCGCCGTCGCCGCCGGCGAAACCGACACCGCTATAGATCAATTGCTAAATTGGGTAAAAGGAAATTCTCGCCCTCCCAACAAGATGATGATTCTCAGGGTGCTAAAAGAATGAAAAATTCAGGGATGTTGCTTTCAAAGGACATCTGGCGCCGTATACATTGCCTGATGCCAATGCGAGATGCGGCTCGTGTTGCATGTGTGTCTCGTGCCTTTCTAAATTCCTGGTTATGTTATCCAAACCTCACCTTTAACAAGGATACGCTGGGATTGGATGAACATGTTTGTGAGACAGATTTCATCAGCAAAGTTGACCACATTCTTAAAAGACACTCGGGCACTTGTGTGAAGACATTCAAGCTTGAAGTCCCGTATGAGCTAGATGTCTGTGACCATGTTGATCGTTGGCTTCAATTTGCTATTACACCAGCGATCGAAGAACTCACTCTTACGCTGTATGGAACTGCTCAAAAGTACAATTTCCCATGCTCACTTCTATCTGATGGGATGGCAGATTCTATTCGGATTCTTGATCTTGGCCATTGCGCCTTCTGTCCCACAATCGAACCTGGTTCATGGAGAAGCCTTAAAAGGCTATGTTTGTCTTTTGTGCGTATCACGGAGGATGATTTANGGTGCCTTCTTTTGAATTCGTTGGCTCTCGAGGG] consensusID : consensus_3567#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 370 fasta sequence [ATCTCCTCCTCCTCCCTCCTCGTCGCAGGATTTGCCAATAAATAGCAAGAGAGATCGATAGATTAGATCGAAGTAGAACAGCGGAGAAGGAGAGTAGGAGCGACGGCACCGCGCGGAGTTGATTCGATTCCGGGTGTCGCCGCCGCCGNCATGGGGATAACGCTCGAGATGAACCGGGTCATGCCCACCCGGCGGAGGCGGCANGCNTNCGCCGCTCNGANANANCCCGACACCCGCTATTAGATCAATTGCTTAAATTGGGTAAAAGGGAAATTCTTCACCCTCCCAACAAGATGATGATTCTCAGGGGTTCTTAAAAGAATTGAAAAATTCAGGGGATGTTTGCTTTTCAAAGGACATCTTGGCCGCC] [+] EMBL OSS14376A [ATCTCCTCCTCCTCCCTCCTCGTCGCAGGATTTGCCAATAAATAGCAAGAGAGATCGATAGATTAGATCGAAGTAGAACAGCGGAGAAGGAGAGTAGGAGCGACGGCACCGCGCGGAGTTGATTCGATTCCGGGTGTCGCCGCCGCCGNCATGGGGATAACGCTCGAGATGAACCGGGTCATGCCCACCCGGCGGAGGCGGCANGCNTNCGCCGCTCNGANANANCCCGACACCCGCTATTAGATCAATTGCTTAAATTGGGTAAAAGGGAAATTCTTCACCCTCCCAACAAGATGATGATTCTCAGGGGTTCTTAAAAGAATTGAAAAATTCAGGGGATGTTTGCTTTTCAAAGGACATCTTGGCCGCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3567#0 ------------------------------------------------------------ consensus_3567#1 ATCTCCTCCTCCTCCCTCCTCGTCGCAGGATTTGCCAATAAATAGCAAGAGAGATCGATA 60 consensus_3567#0 ---------------------------------------------CGACCGCGCGGAGTT 15 consensus_3567#1 GATTAGATCGAAGTAGAACAGCGGAGAAGGAGAGTAGGAGCGACGGCACCGCGCGGAGTT 120 ************* consensus_3567#0 GATTCGATTCCGGGTGTCGCCGCCGCTGGCCATGGGGATAACGCTCGAGATGAACCGGGT 75 consensus_3567#1 GATTCGATTCCGGGTGTCGCCGCCGCCGNC-ATGGGGATAACGCTCGAGATGAACCGGGT 179 ************************** * * ***************************** consensus_3567#0 CATGCCCACCCGGCGGAGGCGGCAG--CGCCGTCGCCGCCGGCGAAACCGACACC-GCTA 132 consensus_3567#1 CATGCCCACCCGGCGGAGGCGGCANGCNTNCGCCGCTCNGANANANCCCGACACCCGCTA 239 ************************ ** *** * ******** **** consensus_3567#0 T-AGATCAATTGCT-AAATTGGGTAAAAGGAAA--TTCTCGCCCTCCCAACAAGATGATG 188 consensus_3567#1 TTAGATCAATTGCTTAAATTGGGTAAAAGGGAAATTCTTCACCCTCCCAACAAGATGATG 299 * ************ *************** ** * ** ******************* consensus_3567#0 ATTCTCAGGG--TGCTAAAAGAAT-GAAAAATTCAGGG-ATGTTG--CTTTCAAAGGACA 242 consensus_3567#1 ATTCTCAGGGGTTCTTAAAAGAATTGAAAAATTCAGGGGATGTTTGCTTTTCAAAGGACA 359 ********** * ********* ************* ***** ************ consensus_3567#0 TCTGGCGCCGTATACATTGCCTGATGCCAATGCGAGATGCGGCTCGTGTTGCATGTGTGT 302 consensus_3567#1 TCTTG-GCCGCC------------------------------------------------ 370 *** * **** consensus_3567#0 CTCGTGCCTTTCTAAATTCCTGGTTATGTTATCCAAACCTCACCTTTAACAAGGATACGC 362 consensus_3567#1 ------------------------------------------------------------ consensus_3567#0 TGGGATTGGATGAACATGTTTGTGAGACAGATTTCATCAGCAAAGTTGACCACATTCTTA 422 consensus_3567#1 ------------------------------------------------------------ consensus_3567#0 AAAGACACTCGGGCACTTGTGTGAAGACATTCAAGCTTGAAGTCCCGTATGAGCTAGATG 482 consensus_3567#1 ------------------------------------------------------------ consensus_3567#0 TCTGTGACCATGTTGATCGTTGGCTTCAATTTGCTATTACACCAGCGATCGAAGAACTCA 542 consensus_3567#1 ------------------------------------------------------------ consensus_3567#0 CTCTTACGCTGTATGGAACTGCTCAAAAGTACAATTTCCCATGCTCACTTCTATCTGATG 602 consensus_3567#1 ------------------------------------------------------------ consensus_3567#0 GGATGGCAGATTCTATTCGGATTCTTGATCTTGGCCATTGCGCCTTCTGTCCCACAATCG 662 consensus_3567#1 ------------------------------------------------------------ consensus_3567#0 AACCTGGTTCATGGAGAAGCCTTAAAAGGCTATGTTTGTCTTTTGTGCGTATCACGGAGG 722 consensus_3567#1 ------------------------------------------------------------ consensus_3567#0 ATGATTTANGGTGCCTTCTTTTGAATTCGTTGGCTCTCGAGGG 765 consensus_3567#1 ------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||