These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_362#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2499 fasta sequence [GCGGCTGGCGAGCGGCGACGGACGGCTCGACGGCTCGACGGCGCGGGAGGCCGGCAGTCTGCGCCGCAGGCCTAGGCAGAAGGGGAAGCCAAGGAGCTAAGGAGCAAGGCAACAAAACAAGAAAATGGTTAGAAAGAGAGAGGCAGAGGAAGGTCTTGGCATCACGAAGAGTGTTGGAAAGATGCTGACATTGAAAAGGGGTCTTGATGATATCACCATAAGCCCAAGTACGAGTAAAAGATCTTGCAATGGAGAGGAGATATCTGGTTTGCTCTCTCTGTGTGTGTGCGCGCACACGCGTGTGTGTTCATGTTTCTTGTAGCTCTATTTGAGTACTCAGTTGTGCTATGTTTGTTTAATTAGGTGAACTCATTGAAGAGGTCCCATCCAATTTTAGTAATGTCGTATCACTTGCTTTATCTGATGGTGATTACGTTGTTATACTCTTCTTGGTTTGCCAAATATATATTTATTAACGTTGCTAGGTATAAATGATCTAAGTTACTCTTCTTGTGTAGGACACTCTGTGTTGTTTGCATGCTCAGGCATAACTATAGAACACAAGCGTAACTTCACAAGGTTTTTGACTTCAGCAAGTTTGGTTAAAGCTTTCAATGATAAAACAAAAGACCGTGATAACTTAAAGGTGGTGTTGCTAACCATCCTTTACTATTTTTTGCTGTTTACATAAGATATAATTGCGATCATTCGATAACATCGCAGTATAATTATAGATCGAAGTGCGCTGTGAAGGCAATTTTGTCGTAGGGTGTTTGGATGAATATGATTTAGATCACGAAATTGCTTTTGTCAAAGTCATGACCTTCCTTAATGTTCACGAGGTGCTTCCCAATCACGTGATGAAATATCTGTCCGTGAGTAAGGTAGTAGCTGTAGGACGTGATATCTCTGGCAAATTAATCACCACAGATGGGATGCTAATTAGCGATTCAAATGGATCTGAAGATGCTGAAGAGTTTATGTTGTCCACATGTAAAATCTCTGAGGTATACTTTAAACAGAAGTTCTTCGATCTATCTCTATTACTAAATGCACTTGTAGGCATCATTTGTATGCAACCCGTGTTCTGTATAACTCTATTTTGTTGATTAGTTCCTATGTAACCCTTGTTGCCTGCCATTTTGTTTACATGCTAGGGTTGGGAAGGTGGGGCACTGTTTGATTCTGATGGGAACCTTATTGGCATGAACCTTTTATTTCTTGTGGGAAGATCCCTTTTCCTGCCGATCAGTATAATTATTGAACGGTTGGAGTATTTTCGGACATCCTACCGAAGGAGGAAATTTTTTGCATTGGCAACAAAATTGAAGGCAATCAGGGTTGGAGGAAGACTCTCAATTGAGATGCCTAAGTCCCTTCTAGAAGATGTTTGTGATGAGGATCAATTTGAGTGTCTAGACTCCATGGGTTATCCCATGCCATCAATAAATGGCATGGTTTTGGTCAACACTTTTGAAGAGACTTTTGGCGACTTGTATGATGAAGGTGTCTGGAGTGAGCTCAGCAAAAATGTTTCTTCAAGAATATCTCGAAATGTTGTCTCGCTTGCTTCATTCAATGGAGAAACAAGATATTTTGCATGCACAGGTTTTTTTATTGAATGGAACGGATGTACATCTATTCTGACTTCAGCGAGCTTAGTTAGAAAATCTGGCGATCGTAGCAAGATTGTTGAAAATTTGAGGATTGAAGTGTTGCTTCCAAACAAAAAACGTACAGAAGGGACACTAGAGCACTGTAATTTACATTACAATGTTGCTATTGTCAGTGTGAAGGATTTCCGTGCTCTTTGCCCTGCAAATCTTCATCATGAGCAGGAAAGTGTATGTGAGGATGTATTAGCTGTGGGGCGCTGCTTCGAATCAGACATATTAATGGCTGCAAGTGGTCGTTTGGTTGGCTGGTCAGGCACACTTGATTGCAGAATGCTTCGGTACGCCAATTTTAAAATCACCAAGGCTGGGATTGGAGGGCCTCTTATTGATTTTGATGGGAGATATGTTGGTATCAACTTCTTTGATGACATAGTAGGAACCCCATTCCTATCATGCACCGTTATCCTCCACGTTCTGTCACGTTTTGATGAAGAAAGGACTATCAATAAAGTTGGCAATGGTGACACTTCATCTGGTGTGCTTGATTGGACTATGACTGGAGATCGTAGTGTTCGGCCAAATAGCTGGCCCGTGCCCAAGCCATTTTGGTGTCATCCGGACGATCTGCCCCGTAATGAAACCCGGACTCGCCACAAATACGGATACTACAATGGACAGAAGTTCAAGTACATGTGTTAGGGCTTAGTTCTGTTTCGTTGAAAATTTGCTACTTAACCTGTACAAGAAGTCATATGCTTGGTTCTGCCATTTTGAATTGCTATGTTTATGTCTTGGCAAGGGAATCTGACGACTTGTGCTTGTCTTGACAATTTATATGTATGTACAAATGTTCATTTTGGTGCTGTGGACTGCTGCGTTGCTT] [+] EMBL AK068921 [GCGGCTGGCGAGCGGCGACGGACGGCTCGACGGCTCGACGGCGCGGGAGGCCGGCAGTCTGCGCCGCAGGCCTAGGCAGAAGGGGAAGCCAAGGAGCTAAGGAGCAAGGCAACAAAACAAGAAAATGGTTAGAAAGAGAGAGGCAGAGGAAGGTCTTGGCATCACGAAGAGTGTTGGAAAGATGCTGACATTGAAAAGGGGTCTTGATGATATCACCATAAGCCCAAGTACGAGTAAAAGATCTTGCAATGGAGAGGAGATATCTGGTTTGCTCTCTCTGTGTGTGTGCGCGCACACGCGTGTGTGTTCATGTTTCTTGTAGCTCTATTTGAGTACTCAGTTGTGCTATGTTTGTTTAATTAGGTGAACTCATTGAAGAGGTCCCATCCAATTTTAGTAATGTCGTATCACTTGCTTTATCTGATGGTGATTACGTTGTTATACTCTTCTTGGTTTGCCAAATATATATTTATTAACGTTGCTAGGTATAAATGATCTAAGTTACTCTTCTTGTGTAGGACACTCTGTGTTGTTTGCATGCTCAGGCATAACTATAGAACACAAGCGTAACTTCACAAGGTTTTTGACTTCAGCAAGTTTGGTTAAAGCTTTCAATGATAAAACAAAAGACCGTGATAACTTAAAGGTGGTGTTGCTAACCATCCTTTACTATTTTTTGCTGTTTACATAAGATATAATTGCGATCATTCGATAACATCGCAGTATAATTATAGATCGAAGTGCGCTGTGAAGGCAATTTTGTCGTAGGGTGTTTGGATGAATATGATTTAGATCACGAAATTGCTTTTGTCAAAGTCATGACCTTCCTTAATGTTCACGAGGTGCTTCCCAATCACGTGATGAAATATCTGTCCGTGAGTAAGGTAGTAGCTGTAGGACGTGATATCTCTGGCAAATTAATCACCACAGATGGGATGCTAATTAGCGATTCAAATGGATCTGAAGATGCTGAAGAGTTTATGTTGTCCACATGTAAAATCTCTGAGGTATACTTTAAACAGAAGTTCTTCGATCTATCTCTATTACTAAATGCACTTGTAGGCATCATTTGTATGCAACCCGTGTTCTGTATAACTCTATTTTGTTGATTAGTTCCTATGTAACCCTTGTTGCCTGCCATTTTGTTTACATGCTAGGGTTGGGAAGGTGGGGCACTGTTTGATTCTGATGGGAACCTTATTGGCATGAACCTTTTATTTCTTGTGGGAAGATCCCTTTTCCTGCCGATCAGTATAATTATTGAACGGTTGGAGTATTTTCGGACATCCTACCGAAGGAGGAAATTTTTTGCATTGGCAACAAAATTGAAGGCAATCAGGGTTGGAGGAAGACTCTCAATTGAGATGCCTAAGTCCCTTCTAGAAGATGTTTGTGATGAGGATCAATTTGAGTGTCTAGACTCCATGGGTTATCCCATGCCATCAATAAATGGCATGGTTTTGGTCAACACTTTTGAAGAGACTTTTGGCGACTTGTATGATGAAGGTGTCTGGAGTGAGCTCAGCAAAAATGTTTCTTCAAGAATATCTCGAAATGTTGTCTCGCTTGCTTCATTCAATGGAGAAACAAGATATTTTGCATGCACAGGTTTTTTTATTGAATGGAACGGATGTACATCTATTCTGACTTCAGCGAGCTTAGTTAGAAAATCTGGCGATCGTAGCAAGATTGTTGAAAATTTGAGGATTGAAGTGTTGCTTCCAAACAAAAAACGTACAGAAGGGACACTAGAGCACTGTAATTTACATTACAATGTTGCTATTGTCAGTGTGAAGGATTTCCGTGCTCTTTGCCCTGCAAATCTTCATCATGAGCAGGAAAGTGTATGTGAGGATGTATTAGCTGTGGGGCGCTGCTTCGAATCAGACATATTAATGGCTGCAAGTGGTCGTTTGGTTGGCTGGTCAGGCACACTTGATTGCAGAATGCTTCGGTACGCCAATTTTAAAATCACCAAGGCTGGGATTGGAGGGCCTCTTATTGATTTTGATGGGAGATATGTTGGTATCAACTTCTTTGATGACATAGTAGGAACCCCATTCCTATCATGCACCGTTATCCTCCACGTTCTGTCACGTTTTGATGAAGAAAGGACTATCAATAAAGTTGGCAATGGTGACACTTCATCTGGTGTGCTTGATTGGACTATGACTGGAGATCGTAGTGTTCGGCCAAATAGCTGGCCCGTGCCCAAGCCATTTTGGTGTCATCCGGACGATCTGCCCCGTAATGAAACCCGGACTCGCCACAAATACGGATACTACAATGGACAGAAGTTCAAGTACATGTGTTAGGGCTTAGTTCTGTTTCGTTGAAAATTTGCTACTTAACCTGTACAAGAAGTCATATGCTTGGTTCTGCCATTTTGAATTGCTATGTTTATGTCTTGGCAAGGGAATCTGACGACTTGTGCTTGTCTTGACAATTTATATGTATGTACAAATGTTCATTTTGGTGCTGTGGACTGCTGCGTTGCTT] consensusID : consensus_362#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 634 fasta sequence [AAAACCGCCCCTTCCACAAAATTTTAAAAATTTGGGGGGAAGGGGTTCCCCCCAAAAAAGTGTAGAAGGGCCCTTGGCCCGGTNNNNNNNATCAAGTGGGTTTTGTCAGGGGAGGGGTTTCCCTCTTTTCCCCCGAATTTTTTTTTTAACCAAAAAGGTTTTTTGGATTTTTAATTTGGGGCGTGTTTTAAATCGGAATTTTAAGGGTCCAAGGGGCCTTGGGGGGCGGTCAGGCCCCTTAATCCAAATGGTTCGGTCCCCAATTTAAATCCCCCAGGGCTTTCAAAAAAGTGGCCAAGGTGCCCCTTCATTTGGGGTGCTGGATTGGACTATGACTGAGATTCGTAGGGTTCGGCCCAATAAGTTGGGCCGTGCCCAAGCCATTTTGGTGTCATNGGGACGATNTGCCCNGTAATGAACCCGGACTCGCCACAAATACGGATACTACAATGGACAGAAGTTCAAGTTCTGTTTCGTTGAAAATNTGCTACTTAACCTGTACAAGAAGTCATATGCTTGGTTCTGCCATNNNNTTAAAAGTAAGGATATGTCTCGGCAAGGGAATCTGACGACNTTGTGGCTTTCTTGACAATTTATATATATGTACAAATGTTCATTTTGGTGCTAAAAAAAA] [-] EMBL CA760313 [AAAACCGCCCCTTCCACAAAATTTTAAAAATTTGGGGGGAAGGGGTTCCCCCCAAAAAAGTGTAGAAGGGCCCTTGGCCCGGTNNNNNNNATCAAGTGGGTTTTGTCAGGGGAGGGGTTTCCCTCTTTTCCCCCGAATTTTTTTTTTAACCAAAAAGGTTTTTTGGATTTTTAATTTGGGGCGTGTTTTAAATCGGAATTTTAAGGGTCCAAGGGGCCTTGGGGGGCGGTCAGGCCCCTTAATCCAAATGGTTCGGTCCCCAATTTAAATCCCCCAGGGCTTTCAAAAAAGTGGCCAAGGTGCCCCTTCATTTGGGGTGCTGGATTGGACTATGACTGAGATTCGTAGGGTTCGGCCCAATAAGTTGGGCCGTGCCCAAGCCATTTTGGTGTCATNGGGACGATNTGCCCNGTAATGAACCCGGACTCGCCACAAATACGGATACTACAATGGACAGAAGTTCAAGTTCTGTTTCGTTGAAAATNTGCTACTTAACCTGTACAAGAAGTCATATGCTTGGTTCTGCCATNNNNTTAAAAGTAAGGATATGTCTCGGCAAGGGAATCTGACGACNTTGTGGCTTTCTTGACAATTTATATATATGTACAAATGTTCATTTTGGTGCTAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_362#0 GCGGCTGGCGAGCGGCGACGGACGGCTCGACGGCTCGACGGCGCGGGAGGCCGGCAGTCT 60 consensus_362#1 ------------------------------------------------------------ consensus_362#0 GCGCCGCAGGCCTAGGCAGAAGGGGAAGCCAAGGAGCTAAGGAGCAAGGCAACAAAACAA 120 consensus_362#1 ------------------------------------------------------------ consensus_362#0 GAAAATGGTTAGAAAGAGAGAGGCAGAGGAAGGTCTTGGCATCACGAAGAGTGTTGGAAA 180 consensus_362#1 ------------------------------------------------------------ consensus_362#0 GATGCTGACATTGAAAAGGGGTCTTGATGATATCACCATAAGCCCAAGTACGAGTAAAAG 240 consensus_362#1 ------------------------------------------------------------ consensus_362#0 ATCTTGCAATGGAGAGGAGATATCTGGTTTGCTCTCTCTGTGTGTGTGCGCGCACACGCG 300 consensus_362#1 ------------------------------------------------------------ consensus_362#0 TGTGTGTTCATGTTTCTTGTAGCTCTATTTGAGTACTCAGTTGTGCTATGTTTGTTTAAT 360 consensus_362#1 ------------------------------------------------------------ consensus_362#0 TAGGTGAACTCATTGAAGAGGTCCCATCCAATTTTAGTAATGTCGTATCACTTGCTTTAT 420 consensus_362#1 ------------------------------------------------------------ consensus_362#0 CTGATGGTGATTACGTTGTTATACTCTTCTTGGTTTGCCAAATATATATTTATTAACGTT 480 consensus_362#1 ------------------------------------------------------------ consensus_362#0 GCTAGGTATAAATGATCTAAGTTACTCTTCTTGTGTAGGACACTCTGTGTTGTTTGCATG 540 consensus_362#1 ------------------------------------------------------------ consensus_362#0 CTCAGGCATAACTATAGAACACAAGCGTAACTTCACAAGGTTTTTGACTTCAGCAAGTTT 600 consensus_362#1 ------------------------------------------------------------ consensus_362#0 GGTTAAAGCTTTCAATGATAAAACAAAAGACCGTGATAACTTAAAGGTGGTGTTGCTAAC 660 consensus_362#1 ------------------------------------------------------------ consensus_362#0 CATCCTTTACTATTTTTTGCTGTTTACATAAGATATAATTGCGATCATTCGATAACATCG 720 consensus_362#1 ------------------------------------------------------------ consensus_362#0 CAGTATAATTATAGATCGAAGTGCGCTGTGAAGGCAATTTTGTCGTAGGGTGTTTGGATG 780 consensus_362#1 ------------------------------------------------------------ consensus_362#0 AATATGATTTAGATCACGAAATTGCTTTTGTCAAAGTCATGACCTTCCTTAATGTTCACG 840 consensus_362#1 ------------------------------------------------------------ consensus_362#0 AGGTGCTTCCCAATCACGTGATGAAATATCTGTCCGTGAGTAAGGTAGTAGCTGTAGGAC 900 consensus_362#1 ------------------------------------------------------------ consensus_362#0 GTGATATCTCTGGCAAATTAATCACCACAGATGGGATGCTAATTAGCGATTCAAATGGAT 960 consensus_362#1 ------------------------------------------------------------ consensus_362#0 CTGAAGATGCTGAAGAGTTTATGTTGTCCACATGTAAAATCTCTGAGGTATACTTTAAAC 1020 consensus_362#1 ------------------------------------------------------------ consensus_362#0 AGAAGTTCTTCGATCTATCTCTATTACTAAATGCACTTGTAGGCATCATTTGTATGCAAC 1080 consensus_362#1 ------------------------------------------------------------ consensus_362#0 CCGTGTTCTGTATAACTCTATTTTGTTGATTAGTTCCTATGTAACCCTTGTTGCCTGCCA 1140 consensus_362#1 ------------------------------------------------------------ consensus_362#0 TTTTGTTTACATGCTAGGGTTGGGAAGGTGGGGCACTGTTTGATTCTGATGGGAACCTTA 1200 consensus_362#1 ------------------------------------------------------------ consensus_362#0 TTGGCATGAACCTTTTATTTCTTGTGGGAAGATCCCTTTTCCTGCCGATCAGTATAATTA 1260 consensus_362#1 ------------------------------------------------------------ consensus_362#0 TTGAACGGTTGGAGTATTTTCGGACATCCTACCGAAGGAGGAAATTTTTTGCATTGGCAA 1320 consensus_362#1 ------------------------------------------------------------ consensus_362#0 CAAAATTGAAGGCAATCAGGGTTGGAGGAAGACTCTCAATTGAGATGCCTAAGTCCCTTC 1380 consensus_362#1 ------------------------------------------------------------ consensus_362#0 TAGAAGATGTTTGTGATGAGGATCAATTTGAGTGTCTAGACTCCATGGGTTATCCCATGC 1440 consensus_362#1 ------------------------------------------------------------ consensus_362#0 CATCAATAAATGGCATGGTTTTGGTCAACACTTTTGAAGAGACTTTTGGCGACTTGTATG 1500 consensus_362#1 ------------------------------------------------------------ consensus_362#0 ATGAAGGTGTCTGGAGTGAGCTCAGCAAAAATGTTTCTTCAAGAATATCTCGAAATGTTG 1560 consensus_362#1 ------------------------------------------------------------ consensus_362#0 TCTCGCTTGCTTCATTCAATGGAGAAACAAGATATTTTGCATGCACAGGTTTTTTTATTG 1620 consensus_362#1 ------------------------------------------------------------ consensus_362#0 AATGGAACGGATGTACATCTATTCTGACTTCAGCGAGCTTAGTTAGAAAATCTGGCGATC 1680 consensus_362#1 ------------------------------------------------------------ consensus_362#0 GTAGCAAGATTGTTGAAAATTTGAGGATTGAAGTGTTGCTTCCAAACAAAAAACGTACAG 1740 consensus_362#1 ------------------------------------------------------------ consensus_362#0 AAGGGACACTAGAGCACTGTAATTTACATTACAATGTTGCTATTGTCAGTGTGAAGGATT 1800 consensus_362#1 ------------------------------------------------------------ consensus_362#0 TCCGTGCTCTTTGCCCTGCAAATCTTCATCATGAGCAGGAAAGTGTATGTGAGGATGTAT 1860 consensus_362#1 -------------------AAAACCGCCCCTTCCACAAAAT------TTTAAAAAT---T 32 *** * * * * ** * * * * ** * consensus_362#0 TAGCTGTGGGGCGCTGCTTCGAATCAGACATATTAATGGCTGCAAGTGGTCGTTTGGTTG 1920 consensus_362#1 TGGGGGGAAGGGGTTCCCCCCAAAAAAGTGTAG-AAGGGCCCT---TGGCC--CGGTNNN 86 * * * ** * * * * ** * ** ** *** *** * * consensus_362#0 GCTGGTCAGGCACACTTGATTGCAGAATGCTTCGGTACGCCAATTTTAAAATCACCAAGG 1980 consensus_362#1 NNNNATCAAGTGGGTTTTGTCAGGGGAGGGGTTTCCCTCTTTTCCCCCGAATTTTTT--- 143 *** * ** * * * * * *** consensus_362#0 CTGGGATTGGAGGGCCTCTTATTGATTTTGATGGGAGATATGTTGGTATCAACTTCTTTG 2040 consensus_362#1 TTTTAACCAAAAAGGTTTTTTGGATTTTTAATTTGGGGCGTGTTTTAAATCGGAATTTTA 203 * * * * * ** **** ** * * **** * *** consensus_362#0 ATGACATAGTAGGAACCCCATTCCTATCATGCACCGTTATCCTCCACGTTCTGTCAC-GT 2099 consensus_362#1 AGGGTCCAAGGGGCCTTGGGGGGCGGTCAGGCCCCTTAATCCAAATGGTTCGGTCCCCAA 263 * * * ** * *** ** ** * **** **** *** * consensus_362#0 TTTGATGAAGAAAGGACTATCAATAAAGTTGGCAATGGTGACACTTCATCTGGTGTGCTT 2159 consensus_362#1 TTTAAATCCCCCAGGGCTTTCAAAAAAGT-GGCCAAGGTGCCCCTTCATTTGGGGTGCTG 322 *** * *** ** **** ***** *** * **** * ****** *** ***** consensus_362#0 GATTGGACTATGACTGGAGATCGTAGTGTTCGGCCAAATA-GCTGGCCCGTGCCCAAGCC 2218 consensus_362#1 GATTGGACTATGACTGAGATTCGTAGGGTTCGGCCCAATAAGTTGGGCCGTGCCCAAGCC 382 **************** ****** ******** **** * *** ************* consensus_362#0 ATTTTGGTGTCATCCGGACGATCTGCCCCGTAATGAAACCCGGACTCGCCACAAATACGG 2278 consensus_362#1 ATTTTGGTGTCATNGGGACGATNTGCCCNGTAATGAA-CCCGGACTCGCCACAAATACGG 441 ************* ******* ***** ******** ********************** consensus_362#0 ATACTACAATGGACAGAAGTTCAAGTACATGTGTTAGGGCTTAGTTCTGTTTCGTTGAAA 2338 consensus_362#1 ATACTACAATGGACAGAAGTTCAAG-------------------TTCTGTTTCGTTGAAA 482 ************************* **************** consensus_362#0 ATTTGCTACTTAACCTGTACAAGAAGTCATATGCTTGGTTCTGCCATTTTGA-ATTGCTA 2397 consensus_362#1 ATNTGCTACTTAACCTGTACAAGAAGTCATATGCTTGGTTCTGCCATNNNNTTAAAAGTA 542 ** ******************************************** * ** consensus_362#0 TGTTTATGTCTTGGCAAGGGAATCTGACGACTT-GTGCTTGTCTTGACAATTTATATGTA 2456 consensus_362#1 AGGATATGTCTCGGCAAGGGAATCTGACGACNTTGTGGCTTTCTTGACAATTTATATATA 602 * ******* ******************* * *** * **************** ** consensus_362#0 TGTACAAATGTTCATTTTGGTGCTGTGGACTGCTGCGTTGCTT 2499 consensus_362#1 TGTACAAATGTTCATTTTGGTGCTAAAAAAAA----------- 634 ************************ * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||