These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3646#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 447 fasta sequence [TTTTTTTTTTTTTTTTTTACTATGATGGAATAAAGGAGAAATAACCTACAGAACACAGCCGGTTTACAAAATGGAAGATTGGTACAAGAATCATGAGTCCCCGGTAGATTGGCCCAAAGGCCTTAAAATGTAGTAGGAAAGAACATGGCTTAATTCGGATGCTAATCCAGTAGCTGGTCCATTGGCTGTCGCACCACCGTTTCTGAAGAAACTCTTCTATTCGTGACACACTGCTGCTGCTCCCAAGACAACTACATGTAAGGTTTATATAGCAGGCAGCAAATACGCCGTAGTTACTAGAAACTAATATCGCTATGTTGCTAGAGTTGATTCCACACGACATCCAGATTGGATGAATCAGTTGAGCCGACTGCCGCAATATCATCCAAAACCTACAAGAATCCAGCTTATGCTACCCGGTCTGCTCGGTTGAACTTGCTTGTCCAG] [+] EMBL CA760528 [TTTTTTTTTTTTTTTTTTACTATGATGGAATAAAGGAGAAATAACCTACAGAACACAGCCGGTTTACAAAATGGAAGATTGGTACAAGAATCATGAGTCCCCGGTAGATTGGCCCAAAGGCCTTAAAATGTAGTAGGAAAGAACATGGCTTAATTCGGATGCTAATCCAGTAGCTGGTCCATTGGCTGTCGCACCACCGTTTCTGAAGAAACTCTTCTATTCGTGACACACTGCTGCTGCTCCCAAGACAACTACATGTAAGGTTTATATAGCAGGCAGCAAATACGCCGTAGTTACTAGAAACTAATATCGCTATGTTGCTAGAGTTGATTCCACACGACATCCAGATTGGATGAATCAGTTGAGCCGACTGCCGCAATATCATCCAAAACCTACAAGAATCCAGCTTATGCTACCCGGTCTGCTCGGTTGAACTTGCTTGTCCAG] consensusID : consensus_3646#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 382 fasta sequence [CGVGAAAAAATGTACATTTCATGATGAGATTAGATAAGTTGCAACCAGAAATGTAGAATCAGCCTGAAAAATATGAGCTACTATGATGGAATAAAGGAGAAATAACCTACAGAACACAGCCAGTTTACAAAATGGAAGATTGGTACAAGAATCATGAGTCCCCGGTAGATTGGCCCAAAGGCCTTAAAATGTAGTAGGAAAGAACATGGCTTAATTCGGATGCTAATCCAGTAGCTGGTCCACTGGCTGTCGCACCACCGTTTCTGAAGAAACTCTTCTATTCGTGACACACTGCTGCTGCTCCCAAGACAACTACATGTAAGGKTTTATATAGAGGCAGCAAATACGCCGTAGTTACTAGAAACTAATATCGCTATGTTGC] [+] EMBL BE230773 [CGVGAAAAAATGTACATTTCATGATGAGATTAGATAAGTTGCAACCAGAAATGTAGAATCAGCCTGAAAAATATGAGCTACTATGATGGAATAAAGGAGAAATAACCTACAGAACACAGCCAGTTTACAAAATGGAAGATTGGTACAAGAATCATGAGTCCCCGGTAGATTGGCCCAAAGGCCTTAAAATGTAGTAGGAAAGAACATGGCTTAATTCGGATGCTAATCCAGTAGCTGGTCCACTGGCTGTCGCACCACCGTTTCTGAAGAAACTCTTCTATTCGTGACACACTGCTGCTGCTCCCAAGACAACTACATGTAAGGKTTTATATAGAGGCAGCAAATACGCCGTAGTTACTAGAAACTAATATCGCTATGTTGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3646#0 ------------------------------------------------------------ consensus_3646#1 CGVGAAAAAATGTACATTTCATGATGAGATTAGATAAGTTGCAACCAGAAATGTAGAATC 60 consensus_3646#0 -TTTTTTTTTTTTTTTTTTACTATGATGGAATAAAGGAGAAATAACCTACAGAACACAGC 59 consensus_3646#1 AGCCTGAAAAATATGAGCTACTATGATGGAATAAAGGAGAAATAACCTACAGAACACAGC 120 * * * ****************************************** consensus_3646#0 CGGTTTACAAAATGGAAGATTGGTACAAGAATCATGAGTCCCCGGTAGATTGGCCCAAAG 119 consensus_3646#1 CAGTTTACAAAATGGAAGATTGGTACAAGAATCATGAGTCCCCGGTAGATTGGCCCAAAG 180 * ********************************************************** consensus_3646#0 GCCTTAAAATGTAGTAGGAAAGAACATGGCTTAATTCGGATGCTAATCCAGTAGCTGGTC 179 consensus_3646#1 GCCTTAAAATGTAGTAGGAAAGAACATGGCTTAATTCGGATGCTAATCCAGTAGCTGGTC 240 ************************************************************ consensus_3646#0 CATTGGCTGTCGCACCACCGTTTCTGAAGAAACTCTTCTATTCGTGACACACTGCTGCTG 239 consensus_3646#1 CACTGGCTGTCGCACCACCGTTTCTGAAGAAACTCTTCTATTCGTGACACACTGCTGCTG 300 ** ********************************************************* consensus_3646#0 CTCCCAAGACAACTACATGTAAGGTTT-ATATAGCAGGCAGCAAATACGCCGTAGTTACT 298 consensus_3646#1 CTCCCAAGACAACTACATGTAAGGKTTTATATAG-AGGCAGCAAATACGCCGTAGTTACT 359 ************************ ** ****** ************************* consensus_3646#0 AGAAACTAATATCGCTATGTTGCTAGAGTTGATTCCACACGACATCCAGATTGGATGAAT 358 consensus_3646#1 AGAAACTAATATCGCTATGTTGC------------------------------------- 382 *********************** consensus_3646#0 CAGTTGAGCCGACTGCCGCAATATCATCCAAAACCTACAAGAATCCAGCTTATGCTACCC 418 consensus_3646#1 ------------------------------------------------------------ consensus_3646#0 GGTCTGCTCGGTTGAACTTGCTTGTCCAG 447 consensus_3646#1 ----------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||