These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3649#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 856 fasta sequence [AGCATTCAGCAACTGATCAGAGAAGGAGGACCAAGATAAATGACAGGCTTGAAATACTTCGTGAACTCCTGCCACACACTGATCAGAAGAGAGACAAAGCTTCTTTCCTTTCGGAGGTTATTGAATACATAAGGTTTTTGCAAGAGAAAGTCCAAAAGTATGAGGAAGCCGATCCAGAAAGGAATCACGAGGATTCCAAATCCATGCCATGGGCAAAAGTCTACTATAGATCATGCTGGAGAAACACAAAGAACACCAGTCAAGTCCAGGGGGAAGATTTGTCACCATCCACACAGGACATGAACAACGAACAGTACGGTCCCAAGCACATATCGGCAGCACAACCTGCTCTCTTCAACACACAGAGTGTAACCAGTACAACCACCAGTTCCTCCCACATGGCAACAGGCACACCACAAAATTTGGAAAAGAACAGCACACCCAGCAATCAGCCACCATGGCTGAGCATGTCAACAATGCGCCAAGAGTCTGAACCAGGCAACAAAATGCCGAACAAGCATGAGAAACAGACCCTTCACGATGAAAACCATAGTATTTCTAGCGCTTACTCTCAAGGGTCTGTTCCTTAACCATTTGTTACTTCAAGACTAAAGTTAGCACAATATGTAACTAACAGGATACTACTTCAATTTGCAACAGATTATTCAACAGATTGACAGAAGCTCTTAAAAAGTCAGGACTAGATCCATCTCAAGCTAATATAGCTGTAGAGATCAACCTGGCCAAACGAGCAAGAGATAATACTAGTGACAACTCAAAGGTATAGAGCTTTACAAAGTTGATTTATTCATGATGTTTGAACATATAGATCGTCTGCTTAATAATTATTTTGTAC] [+] EMBL AK068228 [AGCATTCAGCAACTGATCAGAGAAGGAGGACCAAGATAAATGACAGGCTTGAAATACTTCGTGAACTCCTGCCACACACTGATCAGAAGAGAGACAAAGCTTCTTTCCTTTCGGAGGTTATTGAATACATAAGGTTTTTGCAAGAGAAAGTCCAAAAGTATGAGGAAGCCGATCCAGAAAGGAATCACGAGGATTCCAAATCCATGCCATGGGCAAAAGTCTACTATAGATCATGCTGGAGAAACACAAAGAACACCAGTCAAGTCCAGGGGGAAGATTTGTCACCATCCACACAGGACATGAACAACGAACAGTACGGTCCCAAGCACATATCGGCAGCACAACCTGCTCTCTTCAACACACAGAGTGTAACCAGTACAACCACCAGTTCCTCCCACATGGCAACAGGCACACCACAAAATTTGGAAAAGAACAGCACACCCAGCAATCAGCCACCATGGCTGAGCATGTCAACAATGCGCCAAGAGTCTGAACCAGGCAACAAAATGCCGAACAAGCATGAGAAACAGACCCTTCACGATGAAAACCATAGTATTTCTAGCGCTTACTCTCAAGGGTCTGTTCCTTAACCATTTGTTACTTCAAGACTAAAGTTAGCACAATATGTAACTAACAGGATACTACTTCAATTTGCAACAGATTATTCAACAGATTGACAGAAGCTCTTAAAAAGTCAGGACTAGATCCATCTCAAGCTAATATAGCTGTAGAGATCAACCTGGCCAAACGAGCAAGAGATAATACTAGTGACAACTCAAAGGTATAGAGCTTTACAAAGTTGATTTATTCATGATGTTTGAACATATAGATCGTCTGCTTAATAATTATTTTGTAC] consensusID : consensus_3649#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 348 fasta sequence [GGGAAGAAGTAGCGCCAGAGCGNCGATCAGGGTCCCAGCACTCCGAGATCAAAGCATTCAGCAACTNAGCAGAGAAGGNGGACCAAGATAAATGACAGGCTTNAAATACTTCGTGAACTCCTGCCACACACTGATCAGAAGAGAGACAAAGCTTCTTTCCTTTCGGAGGTTATTGACTACATAAGGTTTTTGCAAGTGCAAGTCCAAAAGTATGAGGAAGCCGATCCAGAAAGGAAATCACGTGGGATTCCCAAATGCATCGTCATNNGGCAACAAGGTCTTACTATAGATCATCACTGGTGGAGCANACAGGACACCAGTNAAGTTCCCAGGGGGGAAGGCCTTNGT] [+] EMBL D43211 [GGGAAGAAGTAGCGCCAGAGCGNCGATCAGGGTCCCAGCACTCCGAGATCAAAGCATTCAGCAACTNAGCAGAGAAGGNGGACCAAGATAAATGACAGGCTTNAAATACTTCGTGAACTCCTGCCACACACTGATCAGAAGAGAGACAAAGCTTCTTTCCTTTCGGAGGTTATTGACTACATAAGGTTTTTGCAAGTGCAAGTCCAAAAGTATGAGGAAGCCGATCCAGAAAGGAAATCACGTGGGATTCCCAAATGCATCGTCATNNGGCAACAAGGTCTTACTATAGATCATCACTGGTGGAGCANACAGGACACCAGTNAAGTTCCCAGGGGGGAAGGCCTTNGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3649#0 ----------------------------------------------------AGCATTCA 8 consensus_3649#1 GGGAAGAAGTAGCGCCAGAGCGNCGATCAGGGTCCCAGCACTCCGAGATCAAAGCATTCA 60 ******** consensus_3649#0 GCAACTGATCAGAGAAGGAGGACCAAGATAAATGACAGGCTTGAAATACTTCGTGAACTC 68 consensus_3649#1 GCAACTNAGCAGAGAAGGNGGACCAAGATAAATGACAGGCTTNAAATACTTCGTGAACTC 120 ****** * ********* *********************** ***************** consensus_3649#0 CTGCCACACACTGATCAGAAGAGAGACAAAGCTTCTTTCCTTTCGGAGGTTATTGAATAC 128 consensus_3649#1 CTGCCACACACTGATCAGAAGAGAGACAAAGCTTCTTTCCTTTCGGAGGTTATTGACTAC 180 ******************************************************** *** consensus_3649#0 ATAAGGTTTTTGCAAGAGAAAGTCCAAAAGTATGAGGAAGCCGATCCAGAAAGGAA-TCA 187 consensus_3649#1 ATAAGGTTTTTGCAAGTGCAAGTCCAAAAGTATGAGGAAGCCGATCCAGAAAGGAAATCA 240 **************** * ************************************* *** consensus_3649#0 CGAGGA--TTCCAAATCCAT-GCCATGGG----CAAAAGTCTACTATAGATCAT-GCTGG 239 consensus_3649#1 CGTGGGATTCCCAAATGCATCGTCATNNGGCAACAAGGTCTTACTATAGATCATCACTGG 300 ** ** * ****** *** * *** * *** ************* **** consensus_3649#0 AGAAACACAAAGAACACCAGTCAAGT--CCAGGGGGAAGATTTGTCACCATCCACACAGG 297 consensus_3649#1 TGGAGCANACAGGACACCAGTNAAGTTCCCAGGGGGGAAGGCCTTNGT------------ 348 * * ** * ** ******** **** ******** * * consensus_3649#0 ACATGAACAACGAACAGTACGGTCCCAAGCACATATCGGCAGCACAACCTGCTCTCTTCA 357 consensus_3649#1 ------------------------------------------------------------ consensus_3649#0 ACACACAGAGTGTAACCAGTACAACCACCAGTTCCTCCCACATGGCAACAGGCACACCAC 417 consensus_3649#1 ------------------------------------------------------------ consensus_3649#0 AAAATTTGGAAAAGAACAGCACACCCAGCAATCAGCCACCATGGCTGAGCATGTCAACAA 477 consensus_3649#1 ------------------------------------------------------------ consensus_3649#0 TGCGCCAAGAGTCTGAACCAGGCAACAAAATGCCGAACAAGCATGAGAAACAGACCCTTC 537 consensus_3649#1 ------------------------------------------------------------ consensus_3649#0 ACGATGAAAACCATAGTATTTCTAGCGCTTACTCTCAAGGGTCTGTTCCTTAACCATTTG 597 consensus_3649#1 ------------------------------------------------------------ consensus_3649#0 TTACTTCAAGACTAAAGTTAGCACAATATGTAACTAACAGGATACTACTTCAATTTGCAA 657 consensus_3649#1 ------------------------------------------------------------ consensus_3649#0 CAGATTATTCAACAGATTGACAGAAGCTCTTAAAAAGTCAGGACTAGATCCATCTCAAGC 717 consensus_3649#1 ------------------------------------------------------------ consensus_3649#0 TAATATAGCTGTAGAGATCAACCTGGCCAAACGAGCAAGAGATAATACTAGTGACAACTC 777 consensus_3649#1 ------------------------------------------------------------ consensus_3649#0 AAAGGTATAGAGCTTTACAAAGTTGATTTATTCATGATGTTTGAACATATAGATCGTCTG 837 consensus_3649#1 ------------------------------------------------------------ consensus_3649#0 CTTAATAATTATTTTGTAC 856 consensus_3649#1 ------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||