|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3649#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 856 fasta sequence
[AGCATTCAGCAACTGATCAGAGAAGGAGGACCAAGATAAATGACAGGCTTGAAATACTTCGTGAACTCCTGCCACACACTGATCAGAAGAGAGACAAAGCTTCTTTCCTTTCGGAGGTTATTGAATACATAAGGTTTTTGCAAGAGAAAGTCCAAAAGTATGAGGAAGCCGATCCAGAAAGGAATCACGAGGATTCCAAATCCATGCCATGGGCAAAAGTCTACTATAGATCATGCTGGAGAAACACAAAGAACACCAGTCAAGTCCAGGGGGAAGATTTGTCACCATCCACACAGGACATGAACAACGAACAGTACGGTCCCAAGCACATATCGGCAGCACAACCTGCTCTCTTCAACACACAGAGTGTAACCAGTACAACCACCAGTTCCTCCCACATGGCAACAGGCACACCACAAAATTTGGAAAAGAACAGCACACCCAGCAATCAGCCACCATGGCTGAGCATGTCAACAATGCGCCAAGAGTCTGAACCAGGCAACAAAATGCCGAACAAGCATGAGAAACAGACCCTTCACGATGAAAACCATAGTATTTCTAGCGCTTACTCTCAAGGGTCTGTTCCTTAACCATTTGTTACTTCAAGACTAAAGTTAGCACAATATGTAACTAACAGGATACTACTTCAATTTGCAACAGATTATTCAACAGATTGACAGAAGCTCTTAAAAAGTCAGGACTAGATCCATCTCAAGCTAATATAGCTGTAGAGATCAACCTGGCCAAACGAGCAAGAGATAATACTAGTGACAACTCAAAGGTATAGAGCTTTACAAAGTTGATTTATTCATGATGTTTGAACATATAGATCGTCTGCTTAATAATTATTTTGTAC]
[+] EMBL AK068228 [AGCATTCAGCAACTGATCAGAGAAGGAGGACCAAGATAAATGACAGGCTTGAAATACTTCGTGAACTCCTGCCACACACTGATCAGAAGAGAGACAAAGCTTCTTTCCTTTCGGAGGTTATTGAATACATAAGGTTTTTGCAAGAGAAAGTCCAAAAGTATGAGGAAGCCGATCCAGAAAGGAATCACGAGGATTCCAAATCCATGCCATGGGCAAAAGTCTACTATAGATCATGCTGGAGAAACACAAAGAACACCAGTCAAGTCCAGGGGGAAGATTTGTCACCATCCACACAGGACATGAACAACGAACAGTACGGTCCCAAGCACATATCGGCAGCACAACCTGCTCTCTTCAACACACAGAGTGTAACCAGTACAACCACCAGTTCCTCCCACATGGCAACAGGCACACCACAAAATTTGGAAAAGAACAGCACACCCAGCAATCAGCCACCATGGCTGAGCATGTCAACAATGCGCCAAGAGTCTGAACCAGGCAACAAAATGCCGAACAAGCATGAGAAACAGACCCTTCACGATGAAAACCATAGTATTTCTAGCGCTTACTCTCAAGGGTCTGTTCCTTAACCATTTGTTACTTCAAGACTAAAGTTAGCACAATATGTAACTAACAGGATACTACTTCAATTTGCAACAGATTATTCAACAGATTGACAGAAGCTCTTAAAAAGTCAGGACTAGATCCATCTCAAGCTAATATAGCTGTAGAGATCAACCTGGCCAAACGAGCAAGAGATAATACTAGTGACAACTCAAAGGTATAGAGCTTTACAAAGTTGATTTATTCATGATGTTTGAACATATAGATCGTCTGCTTAATAATTATTTTGTAC]
consensusID : consensus_3649#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 348 fasta sequence
[GGGAAGAAGTAGCGCCAGAGCGNCGATCAGGGTCCCAGCACTCCGAGATCAAAGCATTCAGCAACTNAGCAGAGAAGGNGGACCAAGATAAATGACAGGCTTNAAATACTTCGTGAACTCCTGCCACACACTGATCAGAAGAGAGACAAAGCTTCTTTCCTTTCGGAGGTTATTGACTACATAAGGTTTTTGCAAGTGCAAGTCCAAAAGTATGAGGAAGCCGATCCAGAAAGGAAATCACGTGGGATTCCCAAATGCATCGTCATNNGGCAACAAGGTCTTACTATAGATCATCACTGGTGGAGCANACAGGACACCAGTNAAGTTCCCAGGGGGGAAGGCCTTNGT]
[+] EMBL D43211 [GGGAAGAAGTAGCGCCAGAGCGNCGATCAGGGTCCCAGCACTCCGAGATCAAAGCATTCAGCAACTNAGCAGAGAAGGNGGACCAAGATAAATGACAGGCTTNAAATACTTCGTGAACTCCTGCCACACACTGATCAGAAGAGAGACAAAGCTTCTTTCCTTTCGGAGGTTATTGACTACATAAGGTTTTTGCAAGTGCAAGTCCAAAAGTATGAGGAAGCCGATCCAGAAAGGAAATCACGTGGGATTCCCAAATGCATCGTCATNNGGCAACAAGGTCTTACTATAGATCATCACTGGTGGAGCANACAGGACACCAGTNAAGTTCCCAGGGGGGAAGGCCTTNGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3649#0 ----------------------------------------------------AGCATTCA 8
consensus_3649#1 GGGAAGAAGTAGCGCCAGAGCGNCGATCAGGGTCCCAGCACTCCGAGATCAAAGCATTCA 60
********
consensus_3649#0 GCAACTGATCAGAGAAGGAGGACCAAGATAAATGACAGGCTTGAAATACTTCGTGAACTC 68
consensus_3649#1 GCAACTNAGCAGAGAAGGNGGACCAAGATAAATGACAGGCTTNAAATACTTCGTGAACTC 120
****** * ********* *********************** *****************
consensus_3649#0 CTGCCACACACTGATCAGAAGAGAGACAAAGCTTCTTTCCTTTCGGAGGTTATTGAATAC 128
consensus_3649#1 CTGCCACACACTGATCAGAAGAGAGACAAAGCTTCTTTCCTTTCGGAGGTTATTGACTAC 180
******************************************************** ***
consensus_3649#0 ATAAGGTTTTTGCAAGAGAAAGTCCAAAAGTATGAGGAAGCCGATCCAGAAAGGAA-TCA 187
consensus_3649#1 ATAAGGTTTTTGCAAGTGCAAGTCCAAAAGTATGAGGAAGCCGATCCAGAAAGGAAATCA 240
**************** * ************************************* ***
consensus_3649#0 CGAGGA--TTCCAAATCCAT-GCCATGGG----CAAAAGTCTACTATAGATCAT-GCTGG 239
consensus_3649#1 CGTGGGATTCCCAAATGCATCGTCATNNGGCAACAAGGTCTTACTATAGATCATCACTGG 300
** ** * ****** *** * *** * *** ************* ****
consensus_3649#0 AGAAACACAAAGAACACCAGTCAAGT--CCAGGGGGAAGATTTGTCACCATCCACACAGG 297
consensus_3649#1 TGGAGCANACAGGACACCAGTNAAGTTCCCAGGGGGGAAGGCCTTNGT------------ 348
* * ** * ** ******** **** ******** * *
consensus_3649#0 ACATGAACAACGAACAGTACGGTCCCAAGCACATATCGGCAGCACAACCTGCTCTCTTCA 357
consensus_3649#1 ------------------------------------------------------------
consensus_3649#0 ACACACAGAGTGTAACCAGTACAACCACCAGTTCCTCCCACATGGCAACAGGCACACCAC 417
consensus_3649#1 ------------------------------------------------------------
consensus_3649#0 AAAATTTGGAAAAGAACAGCACACCCAGCAATCAGCCACCATGGCTGAGCATGTCAACAA 477
consensus_3649#1 ------------------------------------------------------------
consensus_3649#0 TGCGCCAAGAGTCTGAACCAGGCAACAAAATGCCGAACAAGCATGAGAAACAGACCCTTC 537
consensus_3649#1 ------------------------------------------------------------
consensus_3649#0 ACGATGAAAACCATAGTATTTCTAGCGCTTACTCTCAAGGGTCTGTTCCTTAACCATTTG 597
consensus_3649#1 ------------------------------------------------------------
consensus_3649#0 TTACTTCAAGACTAAAGTTAGCACAATATGTAACTAACAGGATACTACTTCAATTTGCAA 657
consensus_3649#1 ------------------------------------------------------------
consensus_3649#0 CAGATTATTCAACAGATTGACAGAAGCTCTTAAAAAGTCAGGACTAGATCCATCTCAAGC 717
consensus_3649#1 ------------------------------------------------------------
consensus_3649#0 TAATATAGCTGTAGAGATCAACCTGGCCAAACGAGCAAGAGATAATACTAGTGACAACTC 777
consensus_3649#1 ------------------------------------------------------------
consensus_3649#0 AAAGGTATAGAGCTTTACAAAGTTGATTTATTCATGATGTTTGAACATATAGATCGTCTG 837
consensus_3649#1 ------------------------------------------------------------
consensus_3649#0 CTTAATAATTATTTTGTAC 856
consensus_3649#1 -------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||