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Oryza sativa
cluster # 3665 cluster # 3665       Sequences # 2       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3665#0 length = 954 sequences # 2  

consensusID : consensus_3665#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 954
fasta sequence
                              [GACATTTACTCCGATATATCGCGGTCGATCGTTGTGAAAAATGTCGGCCCTTGTCAGGTCCGTGGCGTCGCTCTACTGCCAGGGGCTCCGGCGAACCGTCCGCCTCGGCGGCGGCGCCACCGCGGGGACACCGGCGGCGCGAGCACCGGCGCTGGATCAACGGAGGCCGTTCTTGTCCAGGGTGGATCGCATAGAGGCCACCACCGGCGGCGGCGGCGGCGGCGCGGCGGACACGGGAGGATCACCGCGCCGGCATGGCAAAGAAGGAACAGCCCCTCTCTTCACCTGGGCAAGATTG--GTCG--TC--GTCCTCGCCG-CCATGG---CGCCG--TTCTT-GCAGTCCAAGTGGGCGACGCTTCTCCGAATCCAAAGCGAGGTGGAGATGGTGAAGGACGCGGCGGAGACGGCGGCGGAGGTGGTGGAGGAGGTGGCCGCGGCGGTGGAGAAGGCGTCGGCGGAGGTGGCGGAGGCGGAGCAGCTGCCGGAGCA-CGGGGCGCTGCGGCGGGCGGCGGCGCTGGTGGAGCGCGCGTCCAGGGAGGTCGCCGAGGAGGCTCATCTCGCCCACGACATCATCCACAAGGTTGACGAAATCGAAGAGGACGTGAAGACGATGATCGAGCCGATTATAGATAATCACAAGCATGGCACAAGAGGCACCATTAAGAAGCACTAAATTTTCAGAGAACTCAACTTCAGCTCTGTACAAATGTTCAGATTGTTTGTGCAAAACCTCTTAGGTCTTTAGCCAATATTCGTCGAATCGGTTAATTCAATTGTTAATATTCCCCTGTTAAGCAGAGCAACAAATGGGAGAAGAATTTATCAAACTTTTTCAGATAATGTTCTACGAAATTACTTCACTTATCTTCTATGAAGCATGTAATGATAATCATTTCCGCTTGAAAAAAAACCCGAATAATATCTCATTTTCAATCAATCTCCCTCTCGGTCTCGAATTAA]

[+] EMBL AK111349             [GACATTTACTCCGATATATCGCGGTCGATCGTTGTGAAAAATGTCGGCCCTTGTCAGGTCCGTGGCGTCGCTCTACTGCCAGGGGCTCCGGCGAACCGTCCGCCTCGGCGGCGGCGCCACCGCGGGGACACCGGCGGCGCGAGCACCGGCGCTGGATCAACGGAGGCCGTTCTTGTCCAGGGTGGATCGCATAGAGGCCACCACCGGCGGCGGCGGCGGCGGCGCGGCGGACACGGGAGGATCACCGCGCCGGCATGGCAAAGAAGGAACAGCCCCTCTCTTCACCTGGGCAAGATTG  GTCG  TC  GTCCTCGCCG CCATGG   CGCCG  TTCTT GCAGTCCAAGTGGGCGACGCTTCTCCGAATCCAAAGCGAGGTGGAGATGGTGAAGGACGCGGCGGAGACGGCGGCGGAGGTGGTGGAGGAGGTGGCCGCGGCGGTGGAGAAGGCGTCGGCGGAGGTGGCGGAGGCGGAGCAGCTGCCGGAGCA CGGGGCGCTGCGGCGGGCGGCGGCGCTGGTGGAGCGCGCGTCCAGGGAGGTCGCCGAGGAGGCTCATCTCGCCCACGACATCATCCACAAGGTTGACGAAATCGAAGAGGACGTGAAGACGATGATCGAGCCGATTATAGATAATCACAAGCATGGCACAAGAGGCACCATTAAGAAGCACTAAATTTTCAGAGAACTCAACTTCAGCTCTGTACAAATGTTCAGATTGTTTGTGCAAAACCTCTTAGGTCTTTAGCCAATATTCGTCGAATCGGTTAATTCAATTGTTAATATTCCCCTGTTAAGCAGAGCAACAAATGGGAGAAGAATTTATCAAACTTTTTCAGATAATGTTCTACGAAATTACTTCACTTATCTTCTATGAAGCATGTAATGATAATCATTTCCGCTTGAAAAAAAACCCGAATAATATCTCATTTTCAATCAATCTCCCTCTCGGTCTCGAATTAA]
[+] EMBL BI804505             [                                                                                                                                                                                                                                                                                             CTGGCCAAGATTGTCGTCGGCTCCGGTCCTCGCCGCCCATGGGGCCCCCGTTTTCTTCGCAGTCCAAGT GGCGACGCTTCTCCGAATCC AAGCGAGGTGGAGATGGTGAAGGACGCGGCGGAGACGGCGGCGGAGGTGGTGGAGGAGGT GCCGCGCCGGTGGAGAAGGCGTCGGCGGAGGTGGCGGAGGCGGAGCAGCTGCCGGAGCACCGGGGCGCTGCGGCGGGCGGCGGCGCTGGTGGAGCGCGCGTCCAGGGAGGTCGCCGAGGAGGCTCATCTCGCCCACGACATCATCCACAAGGTTGACGAAATCGAAGAGGACGTGAAGACGATGATCGAGCCGATTATAGATAATCACAAGCATGGCACCAGAGGCACCATTAAGAAGCACTAAATTTTCAGAGAACTCAACTTCAGCTCTGTACAAATGTTCAGATTGTTTGTGC AAAGCTCTTAGGTCTTTAGCC ATATTCGTCGAATCGGTTAATTC ATTGTTAATATTCCCCTGTTAAGCAGAGC AC AATGGGAGAAGAATTTATC AACTTTTTCAAAAAAa                                                                                                                       ]


>consensus_3665#0 GACATTTACTCCGATATATCGCGGTCGATCGTTGTGAAAAATGTCGGCCCTTGTCAGGTC CGTGGCGTCGCTCTACTGCCAGGGGCTCCGGCGAACCGTCCGCCTCGGCGGCGGCGCCAC CGCGGGGACACCGGCGGCGCGAGCACCGGCGCTGGATCAACGGAGGCCGTTCTTGTCCAG GGTGGATCGCATAGAGGCCACCACCGGCGGCGGCGGCGGCGGCGCGGCGGACACGGGAGG ATCACCGCGCCGGCATGGCAAAGAAGGAACAGCCCCTCTCTTCACCTGGGCAAGATTGGT CGTCGTCCTCGCCGCCATGGCGCCGTTCTTGCAGTCCAAGTGGGCGACGCTTCTCCGAAT CCAAAGCGAGGTGGAGATGGTGAAGGACGCGGCGGAGACGGCGGCGGAGGTGGTGGAGGA GGTGGCCGCGGCGGTGGAGAAGGCGTCGGCGGAGGTGGCGGAGGCGGAGCAGCTGCCGGA GCACGGGGCGCTGCGGCGGGCGGCGGCGCTGGTGGAGCGCGCGTCCAGGGAGGTCGCCGA GGAGGCTCATCTCGCCCACGACATCATCCACAAGGTTGACGAAATCGAAGAGGACGTGAA GACGATGATCGAGCCGATTATAGATAATCACAAGCATGGCACAAGAGGCACCATTAAGAA GCACTAAATTTTCAGAGAACTCAACTTCAGCTCTGTACAAATGTTCAGATTGTTTGTGCA AAACCTCTTAGGTCTTTAGCCAATATTCGTCGAATCGGTTAATTCAATTGTTAATATTCC CCTGTTAAGCAGAGCAACAAATGGGAGAAGAATTTATCAAACTTTTTCAGATAATGTTCT ACGAAATTACTTCACTTATCTTCTATGAAGCATGTAATGATAATCATTTCCGCTTGAAAA AAAACCCGAATAATATCTCATTTTCAATCAATCTCCCTCTCGGTCTCGAATTAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)