These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3682#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 634 fasta sequence [GAGACCCGAAATAAAAATAAATTAAAAAAAAATCTGCTTCAACGAGAGAACCCAGAAAAAAACCAGCAGAGAGAAGTCTCCAGATTCTAGGGTTGGGGAATCGCGGCGAGAGGAAGTAGCAGCGGCGGCGGCGGAGGGAGGGGAGGTGAACCAGCAGCCTGAGCAGGAGCGGCGGCGTCGGCGGCGGCGGATTCCAAGTTTTGTTGCAATGGGTTTCTTCAGGACCAGCTTCACATTAATGTTTGGAATGGGATGTGGTGTCTATGTAGCTCAGAATTATGACGTCCCAAATGTCAAGAAGCTATTCAACACGTACATGTTCCTAGCCAAGCATATTGAGGAAACATATCGTAAGCCAAAGAGAGACGACTGATAGATTGCAAAGTTTTTTCTTGCATCACCCTTGGATTGTGAAGTATATCTCTGACATGATACAGAAAATGTAATCTCTTCAGAAGTTTCATAGGAAGTTTCTATTTCTCGACAACTGTTGAACTATGATCTTGGTTAGCTGTGAGATTCTACCGATGTAACAGTTTTGCGGATAATTTACCGGATGTCTAGTTGAGCACTTCTTTTTTGTTTGATTGCCAATTGTAGGCAAATGGAAAGTTTATGCTAATTTTTTTCAAAT] [+] EMBL AK103880 [GAGACCCGAAATAAAAATAAATTAAAAAAAAATCTGCTTCAACGAGAGAACCCAGAAAAAAACCAGCAGAGAGAAGTCTCCAGATTCTAGGGTTGGGGAATCGCGGCGAGAGGAAGTAGCAGCGGCGGCGGCGGAGGGAGGGGAGGTGAACCAGCAGCCTGAGCAGGAGCGGCGGCGTCGGCGGCGGCGGATTCCAAGTTTTGTTGCAATGGGTTTCTTCAGGACCAGCTTCACATTAATGTTTGGAATGGGATGTGGTGTCTATGTAGCTCAGAATTATGACGTCCCAAATGTCAAGAAGCTATTCAACACGTACATGTTCCTAGCCAAGCATATTGAGGAAACATATCGTAAGCCAAAGAGAGACGACTGATAGATTGCAAAGTTTTTTCTTGCATCACCCTTGGATTGTGAAGTATATCTCTGACATGATACAGAAAATGTAATCTCTTCAGAAGTTTCATAGGAAGTTTCTATTTCTCGACAACTGTTGAACTATGATCTTGGTTAGCTGTGAGATTCTACCGATGTAACAGTTTTGCGGATAATTTACCGGATGTCTAGTTGAGCACTTCTTTTTTGTTTGATTGCCAATTGTAGGCAAATGGAAAGTTTATGCTAATTTTTTTCAAAT] consensusID : consensus_3682#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 167 fasta sequence [TTCATAGGAAGTTTCTATTTCTCGACAACTGTTGAACTATGATCTTGGTTAGCTGTGAGATTCTACCGATGTAACAGTTTTGCGGATAATTTACCGGATGTCTAGTTGAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU093694 [TTCATAGGAAGTTTCTATTTCTCGACAACTGTTGAACTATGATCTTGGTTAGCTGTGAGATTCTACCGATGTAACAGTTTTGCGGATAATTTACCGGATGTCTAGTTGAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3682#0 GAGACCCGAAATAAAAATAAATTAAAAAAAAATCTGCTTCAACGAGAGAACCCAGAAAAA 60 consensus_3682#1 ------------------------------------------------------------ consensus_3682#0 AACCAGCAGAGAGAAGTCTCCAGATTCTAGGGTTGGGGAATCGCGGCGAGAGGAAGTAGC 120 consensus_3682#1 ------------------------------------------------------------ consensus_3682#0 AGCGGCGGCGGCGGAGGGAGGGGAGGTGAACCAGCAGCCTGAGCAGGAGCGGCGGCGTCG 180 consensus_3682#1 ------------------------------------------------------------ consensus_3682#0 GCGGCGGCGGATTCCAAGTTTTGTTGCAATGGGTTTCTTCAGGACCAGCTTCACATTAAT 240 consensus_3682#1 ------------------------------------------------------------ consensus_3682#0 GTTTGGAATGGGATGTGGTGTCTATGTAGCTCAGAATTATGACGTCCCAAATGTCAAGAA 300 consensus_3682#1 ------------------------------------------------------------ consensus_3682#0 GCTATTCAACACGTACATGTTCCTAGCCAAGCATATTGAGGAAACATATCGTAAGCCAAA 360 consensus_3682#1 ------------------------------------------------------------ consensus_3682#0 GAGAGACGACTGATAGATTGCAAAGTTTTTTCTTGCATCACCCTTGGATTGTGAAGTATA 420 consensus_3682#1 ------------------------------------------------------------ consensus_3682#0 TCTCTGACATGATACAGAAAATGTAATCTCTTCAGAAGTTTCATAGGAAGTTTCTATTTC 480 consensus_3682#1 ---------------------------------------TTCATAGGAAGTTTCTATTTC 21 ********************* consensus_3682#0 TCGACAACTGTTGAACTATGATCTTGGTTAGCTGTGAGATTCTACCGATGTAACAGTTTT 540 consensus_3682#1 TCGACAACTGTTGAACTATGATCTTGGTTAGCTGTGAGATTCTACCGATGTAACAGTTTT 81 ************************************************************ consensus_3682#0 GCGGATAATTTACCGGATGTCTAGTTGAGCACTTCTTTTTTGTTTGATTGCCAATTGTAG 600 consensus_3682#1 GCGGATAATTTACCGGATGTCTAGTTGAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 141 ******************************* * ** * consensus_3682#0 GCAAATGGAAAGTTTATGCTAATTTTTTTCAAAT 634 consensus_3682#1 AAAAAAAAAAAAAAAAAAAAAAAAAA-------- 167 *** *** * ** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||