Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 3682 cluster # 3682       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3682#0 length = 634 sequences # 1  
consensus_3682#1 length = 167 sequences # 1  

consensusID : consensus_3682#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 634
fasta sequence
                              [GAGACCCGAAATAAAAATAAATTAAAAAAAAATCTGCTTCAACGAGAGAACCCAGAAAAAAACCAGCAGAGAGAAGTCTCCAGATTCTAGGGTTGGGGAATCGCGGCGAGAGGAAGTAGCAGCGGCGGCGGCGGAGGGAGGGGAGGTGAACCAGCAGCCTGAGCAGGAGCGGCGGCGTCGGCGGCGGCGGATTCCAAGTTTTGTTGCAATGGGTTTCTTCAGGACCAGCTTCACATTAATGTTTGGAATGGGATGTGGTGTCTATGTAGCTCAGAATTATGACGTCCCAAATGTCAAGAAGCTATTCAACACGTACATGTTCCTAGCCAAGCATATTGAGGAAACATATCGTAAGCCAAAGAGAGACGACTGATAGATTGCAAAGTTTTTTCTTGCATCACCCTTGGATTGTGAAGTATATCTCTGACATGATACAGAAAATGTAATCTCTTCAGAAGTTTCATAGGAAGTTTCTATTTCTCGACAACTGTTGAACTATGATCTTGGTTAGCTGTGAGATTCTACCGATGTAACAGTTTTGCGGATAATTTACCGGATGTCTAGTTGAGCACTTCTTTTTTGTTTGATTGCCAATTGTAGGCAAATGGAAAGTTTATGCTAATTTTTTTCAAAT]

[+] EMBL AK103880             [GAGACCCGAAATAAAAATAAATTAAAAAAAAATCTGCTTCAACGAGAGAACCCAGAAAAAAACCAGCAGAGAGAAGTCTCCAGATTCTAGGGTTGGGGAATCGCGGCGAGAGGAAGTAGCAGCGGCGGCGGCGGAGGGAGGGGAGGTGAACCAGCAGCCTGAGCAGGAGCGGCGGCGTCGGCGGCGGCGGATTCCAAGTTTTGTTGCAATGGGTTTCTTCAGGACCAGCTTCACATTAATGTTTGGAATGGGATGTGGTGTCTATGTAGCTCAGAATTATGACGTCCCAAATGTCAAGAAGCTATTCAACACGTACATGTTCCTAGCCAAGCATATTGAGGAAACATATCGTAAGCCAAAGAGAGACGACTGATAGATTGCAAAGTTTTTTCTTGCATCACCCTTGGATTGTGAAGTATATCTCTGACATGATACAGAAAATGTAATCTCTTCAGAAGTTTCATAGGAAGTTTCTATTTCTCGACAACTGTTGAACTATGATCTTGGTTAGCTGTGAGATTCTACCGATGTAACAGTTTTGCGGATAATTTACCGGATGTCTAGTTGAGCACTTCTTTTTTGTTTGATTGCCAATTGTAGGCAAATGGAAAGTTTATGCTAATTTTTTTCAAAT]


>consensus_3682#0 GAGACCCGAAATAAAAATAAATTAAAAAAAAATCTGCTTCAACGAGAGAACCCAGAAAAA AACCAGCAGAGAGAAGTCTCCAGATTCTAGGGTTGGGGAATCGCGGCGAGAGGAAGTAGC AGCGGCGGCGGCGGAGGGAGGGGAGGTGAACCAGCAGCCTGAGCAGGAGCGGCGGCGTCG GCGGCGGCGGATTCCAAGTTTTGTTGCAATGGGTTTCTTCAGGACCAGCTTCACATTAAT GTTTGGAATGGGATGTGGTGTCTATGTAGCTCAGAATTATGACGTCCCAAATGTCAAGAA GCTATTCAACACGTACATGTTCCTAGCCAAGCATATTGAGGAAACATATCGTAAGCCAAA GAGAGACGACTGATAGATTGCAAAGTTTTTTCTTGCATCACCCTTGGATTGTGAAGTATA TCTCTGACATGATACAGAAAATGTAATCTCTTCAGAAGTTTCATAGGAAGTTTCTATTTC TCGACAACTGTTGAACTATGATCTTGGTTAGCTGTGAGATTCTACCGATGTAACAGTTTT GCGGATAATTTACCGGATGTCTAGTTGAGCACTTCTTTTTTGTTTGATTGCCAATTGTAG GCAAATGGAAAGTTTATGCTAATTTTTTTCAAAT



consensusID : consensus_3682#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 167
fasta sequence
                              [TTCATAGGAAGTTTCTATTTCTCGACAACTGTTGAACTATGATCTTGGTTAGCTGTGAGATTCTACCGATGTAACAGTTTTGCGGATAATTTACCGGATGTCTAGTTGAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU093694             [TTCATAGGAAGTTTCTATTTCTCGACAACTGTTGAACTATGATCTTGGTTAGCTGTGAGATTCTACCGATGTAACAGTTTTGCGGATAATTTACCGGATGTCTAGTTGAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_3682#1 TTCATAGGAAGTTTCTATTTCTCGACAACTGTTGAACTATGATCTTGGTTAGCTGTGAGA TTCTACCGATGTAACAGTTTTGCGGATAATTTACCGGATGTCTAGTTGAGCAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3682#0      GAGACCCGAAATAAAAATAAATTAAAAAAAAATCTGCTTCAACGAGAGAACCCAGAAAAA 60
consensus_3682#1      ------------------------------------------------------------
                                                                                  

consensus_3682#0      AACCAGCAGAGAGAAGTCTCCAGATTCTAGGGTTGGGGAATCGCGGCGAGAGGAAGTAGC 120
consensus_3682#1      ------------------------------------------------------------
                                                                                  

consensus_3682#0      AGCGGCGGCGGCGGAGGGAGGGGAGGTGAACCAGCAGCCTGAGCAGGAGCGGCGGCGTCG 180
consensus_3682#1      ------------------------------------------------------------
                                                                                  

consensus_3682#0      GCGGCGGCGGATTCCAAGTTTTGTTGCAATGGGTTTCTTCAGGACCAGCTTCACATTAAT 240
consensus_3682#1      ------------------------------------------------------------
                                                                                  

consensus_3682#0      GTTTGGAATGGGATGTGGTGTCTATGTAGCTCAGAATTATGACGTCCCAAATGTCAAGAA 300
consensus_3682#1      ------------------------------------------------------------
                                                                                  

consensus_3682#0      GCTATTCAACACGTACATGTTCCTAGCCAAGCATATTGAGGAAACATATCGTAAGCCAAA 360
consensus_3682#1      ------------------------------------------------------------
                                                                                  

consensus_3682#0      GAGAGACGACTGATAGATTGCAAAGTTTTTTCTTGCATCACCCTTGGATTGTGAAGTATA 420
consensus_3682#1      ------------------------------------------------------------
                                                                                  

consensus_3682#0      TCTCTGACATGATACAGAAAATGTAATCTCTTCAGAAGTTTCATAGGAAGTTTCTATTTC 480
consensus_3682#1      ---------------------------------------TTCATAGGAAGTTTCTATTTC 21
                                                             *********************

consensus_3682#0      TCGACAACTGTTGAACTATGATCTTGGTTAGCTGTGAGATTCTACCGATGTAACAGTTTT 540
consensus_3682#1      TCGACAACTGTTGAACTATGATCTTGGTTAGCTGTGAGATTCTACCGATGTAACAGTTTT 81
                      ************************************************************

consensus_3682#0      GCGGATAATTTACCGGATGTCTAGTTGAGCACTTCTTTTTTGTTTGATTGCCAATTGTAG 600
consensus_3682#1      GCGGATAATTTACCGGATGTCTAGTTGAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 141
                      *******************************               *     **    * 

consensus_3682#0      GCAAATGGAAAGTTTATGCTAATTTTTTTCAAAT 634
consensus_3682#1      AAAAAAAAAAAAAAAAAAAAAAAAAA-------- 167
                        ***   ***    *    **            




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)