Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 3738 cluster # 3738       Sequences # 2       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3738#0 length = 2110 sequences # 2  

consensusID : consensus_3738#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 2110
fasta sequence
                              [CGCTTACCACTCTCCTCTAGCCGCCGGCGCCTCCGCCGCGGCCGTGGCCGCCGTCGGTCACTTCCATTGGCGACCACCCCTCGCGCATGGTTTCTTCCGCCTCTACCGCCGCTCTCCTCCCCCTCCCCCGAACACTCTGACGACGCCCAAAGCGCCACCCGACTCACCTCCTCCGCTGCGGCGGCAGGTGGAGCGAGACTACGACGTGGACGGCACCGACGGCGGTGGTCCGGCGCGACGCGCGACGTGCTCCTCCCACAGCATGCTCCTCGATGAGCTCGCGTGCGCGGGCGGGGGATGCGCACGAGGCGTTCGACGAAATGCTCGCGTCGGACAACTTCATGGTCATGGTCAAGCTGCACGTACGGGTGGATGTTGCAGTTCGACCTCGCCTCGCCTCGCCTGCAAGCTCATCCTGGAGATCGGGGGGGGGGGGGAGCACGGGTTGGAGGCCGGCATTGCCATGAACTCAATGCTCATCACGGGGTTTGCCGGCTGTGGCGCATGCAGTGAAGGTCGCCGAGGCATGGGGCATCCTCAGACTGAATGCTGAATAAGTGATGTACACTTGCACGTCCAGTGTTAAATGCATATTGCCGCCATGGCCGTGACGGATCGGGCTAGTTGTCCTCCCAATGTTATCACCTACAACTCTGTTCAGAGCAGGTTTCAACAGTAGTAGAACCAGCGGTTGGAAGCACAGTATGCTCGCCTACAATACATATACCTTAATGGCCTCTGCAAGAAAGGTAGTGCAAAGGAAGTACTTGATCAGTTGGATGTTATGCTAAGTGAAAGGATTGGATCCCTCGGCTTTTACATCGAGTGTTCTTCCGAATTGCCTTCTCCATGACTGAGGGTTTCATATGCCTTGTGCTTGTTAGCGAGGGTCTGCAACTCTGCATACAACACTCTGATGAGCGGGCTGTTAGATATGGGCAAATGGCTGTTCTGAAGCTCTTGACCAAGTACATGATCGACAAAAGTATCGTCCAATCGCAAAGACATTCAACATTTTTATTCATAGTCTTTGGCTCTTTGCATTAGGGAGAAAGTCTTCCATAACCAAGAGCCTGGTCCATGGTCAAGGTTTTACTAATGTTGTGGCATACATTATCCTCATTGATTGGCTTTGCTGCCTTAGAAAACTTAATGAGTTGAAGTACCTAATTTCGTGCACGACAGCGCAGGATATTGCTCCAGAATCCAGATGAAGTCACTCAGATACATTATTGGTTGATGAGATTATGCAGAGATGGAAAATTTGACAAGGATACTTATATTTTTATGAAATCACTTAAAGTGGATTTCCAATGGATCTTCTGGCTTGTTTAGAGTGGTGAATAATATAGAGATTCACCGTGTATTTGAAGGAAATGGTGTACTCTCTGATTGCCATATGTTCGACTTTATAATCAAGTCATTCTATAGGGCTGGTTTTTGTCACAAACGAGACATTTTTAAACTTAACCTTATACTGGATACATTGCCAAACAAATAACCTAATACTTGTGGATTGCCGAAGGTAGCAGGTTCATGATTGCAGATTTGCTGGCAAGATTACAACTTATGTCTAGATCGCAGTCAGTCAACGTTGTGAAAGATTGACCACTAATATGCATAAAGGTTGCCACTTTTCCAGCTGCTCATGTCTTTCTATGGAAAGAAGCATCGAGTCCCAAAACCAAAGTGATGTGTCAATATCAAGCAAGCCATGGGAATTCAGCTCCTCGCGCCGCCTCCCAGTTGCCCGCATTGATAATCATGGGCCTATGGTCAGGTTGGATTTGGACTCCCTGTTGGTTGTCCATACCAAGCATGGACCGCCAATAGACTTATGCCTGCTATAATATTTTGTCCCCTATAACAAATTAGCAGCTGCCGAAATTTACAGCATAATTTCAAAGTCGATTTGCTACGTCCCACATGATGCCTGCACTTCATCTTTTGGATCTTCGGCGACTGCCTTGTTGTTGTCTATCCAAATACTTATACAGTATGCAACTTCTTCAAAAAGTGCAGCCAAGGTAATTTTTCTGTCCCTAACACCACAATATTGCTACTCTTGTTTGCTGGACACCCTACCAAACGGAAAGTCAGATTATATCTG]

[+] EMBL AK110822             [CGCTTACCACTCTCCTCTAGCCGCCGGCGCCTCCGCCGCGGCCGTGGCCGCCGTCGGTCACTTCCATTGGCGACCACCCCTCGCGCATGGTTTCTTCCGCCTCTACCGCCGCTCTCCTCCCCCTCCCCCGAACACTCTGACGACGCCCAAAGCGCCACCCGACTCACCTCCTCCGCTGCGGCGGCAGGTGGAGCGAGACTACGACGTGGACGGCACCGACGGCGGTGGTCCGGCGCGACGCGCGACGTGCTCCTCCCACAGCATGCTCCTCGATGAGCTCGCGTGCGCGGGCGGGGGATGCGCACGAGGCGTTCGACGAAATGCTCGCGTCGGACAACTTCATGGTCATGGTCAAGCTGCACGTACGGGTGGATGTTGCAGTTCGACCTCGCCTCGCCTCGCCTGCAAGCTCATCCTGGAGATCGGGGGGGGGGGGGAGCACGGGTTGGAGGCCGGCATTGCCATGAACTCAATGCTCATCACGGGGTTTGCCGGCTGTGGCGCATGCAGTGAAGGTCGCCGAGGCATGGGGCATCCTCAGACTGAATGCTGAATAAGTGATGTACACTTGCACGTCCAGTGTTAAATGCATATTGCCGCCATGGCCGTGACGGATCGGGCTAGTTGTCCTCCCAATGTTATCACCTACAACTCTGTTCAGAGCAGGTTTCAACAGTAGTAGAACCAGCGGTTGGAAGCACAGTATGCTCGCCTACAATACATATACCTTAATGGCCTCTGCAAGAAAGGTAGTGCAAAGGAAGTACTTGATCAGTTGGATGTTATGCTAAGTGAAAGGATTGGATCCCTCGGCTTTTACATCGAGTGTTCTTCCGAATTGCCTTCTCCATGACTGAGGGTTTCATATGCCTTGTGCTTGTTAGCGAGGGTCTGCAACTCTGCATACAACACTCTGATGAGCGGGCTGTTAGATATGGGCAAATGGCTGTTCTGAAGCTCTTGACCAAGTACATGATCGACAAAAGTATCGTCCAATCGCAAAGACATTCAACATTTTTATTCATAGTCTTTGGCTCTTTGCATTAGGGAGAAAGTCTTCCATAACCAAGAGCCTGGTCCATGGTCAAGGTTTTACTAATGTTGTGGCATACATTATCCTCATTGATTGGCTTTGCTGCCTTAGAAAACTTAATGAGTTGAAGTACCTAATTTCGTGCACGACAGCGCAGGATATTGCTCCAGAATCCAGATGAAGTCACTCAGATACATTATTGGTTGATGAGATTATGCAGAGATGGAAAATTTGACAAGGATACTTATATTTTTATGAAATCACTTAAAGTGGATTTCCAATGGATCTTCTGGCTTGTTTAGAGTGGTGAATAATATAGAGATTCACCGTGTATTTGAAGGAAATGGTGTACTCTCTGATTGCCATATGTTCGACTTTATAATCAAGTCATTCTATAGGGCTGGTTTTTGTCACAAACGAGACATTTTTAAACTTAACCTTATACTGGATACATTGCCAAACAAATAACCTAATACTTGTGGATTGCCGAAGGTAGCAGGTTCATGATTGCAGATTTGCTGGCAAGATTACAACTTATGTCTAGATCGCAGTCAGTCAACGTTGTGAAAGATTGACCACTAATATGCATAAAGGTTGCCACTTTTCCAGCTGCTCATGTCTTTCTATGGAAAGAAGCATCGAGTCCCAAAACCAAAGTGATGTGTCAATATCAAGCAAGCCATGGGAATTCAGCTCCTCGCGCCGCCTCCCAGTTGCCCGCATTGATAATCATGGGCCTATGGTCAGGTTGGATTTGGACTCCCTGTTGGTTGTCCATACCAAGCATGGACCGCCAATAGACTTATGCCTGCTATAATATTTTGTCCCCTATAACAAATTAGCAGCTGCCGAAATTTACAGCATAATTTCAAAGTCGATTTGCTACGTCCCACATGATGCCTGCACTTCATCTTTTGGATCTTCGGCGACTGCCTTGTTGTTGTCTATCCAAATACTTATACAGTATGCAACTTCTTCAAAAAGTGCAGCCAAGGTAATTTTTCTGTCCCTAACACCACAATATTGCTACTCTTGTTTGCTGGACACCCTACCAAACGGAAAGTCAGATTATATCTG]
[+] EMBL AK111463             [                 TAGCCGCCGGCGCCTCCGCCGCGGCCGTGGCCGCCGTCGGTCACTTCCATTGGCGACCACCCCTCGCGCATGGTTTCTTCCGCCTCTACCGCCGCTCTCCTCCCCCTCCCCCGAACACTCTGACGACGCCCAAAGCGCCACCCGACTCACCTCCTCCGCTGCGGCGGCAGGTGGAGCGAGACTACGACGTGGACGGCACCGACGGCGGTGGTCCGGCGCGACGCGCGACGTGCTCCTCCCACAGCATGCTCCTCGATGAGCTCGCGTGCGCGGGCGGGGGATGCGCACGAGGCGTTCGACGAAATGCTCGCGTCGGACAACTTCATGGTCATGGTCAAGCTGCACGTACGGGTGGATGTTGCAGTTCGACCTCGCCTCGCCTCGCCTGCAAGCTCATCCTGGAGATC GGGGGGGGGGGGAGCACGGGTTGGAGGCCGGCATTGCCATGAACTCAATGCTCATCACGGGGTTTGCCGGCTGTGGCGCATGCAGTGAAGGTCGCCGAGGCATGGGGCATCCTCAGACTGAATGCTGAATAAGTGATGTACACTTGCACGTCCAGTGTTAAATGCATATTGCCGCCATGGCCGTGACGGATCGGGCTAGTTGTCCTCCCAATGTTATCACCTACAACTCTGTTCAGAGCAGGTTTCAACAGTAGTAGAACCAGCGGTTGGAAGCACAGTATGCTCGCCTACAATACATATACCTTAATGGCCTCTGCAAGAAAGGTAGTGCAAAGGAAGTACTTGATCAGTTGGATGTTATGCTAAGTGAAAGGATTGGATCCCTCGGCTTTTACATCGAGTGTTCTTCCGAATTGCCTTCTCCATGACTGAGGGTTTCATATGCCTTGTGCTTGTTAGCGAGGGTCTGCAACTCTGCATACAACACTCTGATGAGCGGGCTGTTAGATATGGGCAAATGGCTGTTCTGAAGCTCTTGACCAAGTACATGATCGACAAAAGTATCGTCCAATCGCAAAGACATTCAACATTTTTATTCATAGTCTTTGGCTCTTTGCATTAGGGAGAAAGTCTTCCATAACCAAGAGCCTGGTCCATGGTCAAGGTTTTACTAATGTTGTGGCATACATTATCCTCATTGATTGGCTTTGCTGCCTTAGAAAACTTAATGAGTTGAAGTACCTAATTTCGTGCACGACAGCGCAGGATATTGCTCCAGAATCCAGATGAAGTCACTCAGATACATTATTGGTTGATGAGATTATGCAGAGATGGAAAATTTGACAAGGATACTTATATTTTTATGAAATCACTTAAAGTGGATTTCCAATGGATCTTCTGGCTTGTTTAGAGTGGTGAATAATATAGAGATTCACCGTGTATTTGAAGGAAATGGTGTACTCTCTGATTGCCATATGTTCGACTTTATAATCAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]


>consensus_3738#0 CGCTTACCACTCTCCTCTAGCCGCCGGCGCCTCCGCCGCGGCCGTGGCCGCCGTCGGTCA CTTCCATTGGCGACCACCCCTCGCGCATGGTTTCTTCCGCCTCTACCGCCGCTCTCCTCC CCCTCCCCCGAACACTCTGACGACGCCCAAAGCGCCACCCGACTCACCTCCTCCGCTGCG GCGGCAGGTGGAGCGAGACTACGACGTGGACGGCACCGACGGCGGTGGTCCGGCGCGACG CGCGACGTGCTCCTCCCACAGCATGCTCCTCGATGAGCTCGCGTGCGCGGGCGGGGGATG CGCACGAGGCGTTCGACGAAATGCTCGCGTCGGACAACTTCATGGTCATGGTCAAGCTGC ACGTACGGGTGGATGTTGCAGTTCGACCTCGCCTCGCCTCGCCTGCAAGCTCATCCTGGA GATCGGGGGGGGGGGGGAGCACGGGTTGGAGGCCGGCATTGCCATGAACTCAATGCTCAT CACGGGGTTTGCCGGCTGTGGCGCATGCAGTGAAGGTCGCCGAGGCATGGGGCATCCTCA GACTGAATGCTGAATAAGTGATGTACACTTGCACGTCCAGTGTTAAATGCATATTGCCGC CATGGCCGTGACGGATCGGGCTAGTTGTCCTCCCAATGTTATCACCTACAACTCTGTTCA GAGCAGGTTTCAACAGTAGTAGAACCAGCGGTTGGAAGCACAGTATGCTCGCCTACAATA CATATACCTTAATGGCCTCTGCAAGAAAGGTAGTGCAAAGGAAGTACTTGATCAGTTGGA TGTTATGCTAAGTGAAAGGATTGGATCCCTCGGCTTTTACATCGAGTGTTCTTCCGAATT GCCTTCTCCATGACTGAGGGTTTCATATGCCTTGTGCTTGTTAGCGAGGGTCTGCAACTC TGCATACAACACTCTGATGAGCGGGCTGTTAGATATGGGCAAATGGCTGTTCTGAAGCTC TTGACCAAGTACATGATCGACAAAAGTATCGTCCAATCGCAAAGACATTCAACATTTTTA TTCATAGTCTTTGGCTCTTTGCATTAGGGAGAAAGTCTTCCATAACCAAGAGCCTGGTCC ATGGTCAAGGTTTTACTAATGTTGTGGCATACATTATCCTCATTGATTGGCTTTGCTGCC TTAGAAAACTTAATGAGTTGAAGTACCTAATTTCGTGCACGACAGCGCAGGATATTGCTC CAGAATCCAGATGAAGTCACTCAGATACATTATTGGTTGATGAGATTATGCAGAGATGGA AAATTTGACAAGGATACTTATATTTTTATGAAATCACTTAAAGTGGATTTCCAATGGATC TTCTGGCTTGTTTAGAGTGGTGAATAATATAGAGATTCACCGTGTATTTGAAGGAAATGG TGTACTCTCTGATTGCCATATGTTCGACTTTATAATCAAGTCATTCTATAGGGCTGGTTT TTGTCACAAACGAGACATTTTTAAACTTAACCTTATACTGGATACATTGCCAAACAAATA ACCTAATACTTGTGGATTGCCGAAGGTAGCAGGTTCATGATTGCAGATTTGCTGGCAAGA TTACAACTTATGTCTAGATCGCAGTCAGTCAACGTTGTGAAAGATTGACCACTAATATGC ATAAAGGTTGCCACTTTTCCAGCTGCTCATGTCTTTCTATGGAAAGAAGCATCGAGTCCC AAAACCAAAGTGATGTGTCAATATCAAGCAAGCCATGGGAATTCAGCTCCTCGCGCCGCC TCCCAGTTGCCCGCATTGATAATCATGGGCCTATGGTCAGGTTGGATTTGGACTCCCTGT TGGTTGTCCATACCAAGCATGGACCGCCAATAGACTTATGCCTGCTATAATATTTTGTCC CCTATAACAAATTAGCAGCTGCCGAAATTTACAGCATAATTTCAAAGTCGATTTGCTACG TCCCACATGATGCCTGCACTTCATCTTTTGGATCTTCGGCGACTGCCTTGTTGTTGTCTA TCCAAATACTTATACAGTATGCAACTTCTTCAAAAAGTGCAGCCAAGGTAATTTTTCTGT CCCTAACACCACAATATTGCTACTCTTGTTTGCTGGACACCCTACCAAACGGAAAGTCAG ATTATATCTG



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)