These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3771#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1147 fasta sequence [CATATCAATGGATCAGAGGATTGAGCACTCCTACCTGCCCATCAGAGGCCTGAAGCTTCACATAGCTCACATTGGAAAAGGTGAAGCTGCAACTCTGCTCTTCGTTCATGGCTTCCCTGAGGTGTGGTACTCATGGAGGCACCAGATGATTGCAGCAGCAGCAGCCGGGTTCCGTGCTATTGCACTTGATTTCCCAGGCTATGGCCTCTCGGAGCCACCGGCTGACCTAACACAGGCGTCATGGCAGGGCCTGATGAATGACCTCTTGGCCATTCTAGACTCGCTGTCGATTCCCAAGGTGTTCCTTGTTGCAAAGGATTTTGGAGTCAAACCAGCATATGATCTTGCCCTCTGCCATCCGGACCGCGTATGTGGTATTGTGAGCTTAGGTGTGCCACCTCTTGTGGAAAGCCTCAGTTTCAGTGGACTTCCTGAGGGATTTTACATACACAGATGGAGGGAACCTGGGAGAGCAGAGGCGGATTTTGGCCGATTCGACACGAGGAGGATCTTGCGCACAATCTACATCCTCTTCTCCAGGAGTGAGATTCCAGTTGCCAAGCAAGGACAAGAGATCATGGACCTTGCAGATGAATCAACACCGATGCCTCAGTGGTTCACCGAAGAAGACCTCTCAGCTTACACCGACCTGTATGAGAAATCAGGTCTCATGACTGCTATCCAAATTCCATATAGGACCAAGGCTGCAAAAGCAGAAGGTGCTAATCCAAGGTTTGAAATGCCAATGTTTGTGATTATGGGTCAGAAAGACTACATCCTCAAGTTTCCAGCACTGAAGGAATATATGTCAAGTGAAAAACTGAAAGAAATTGCTCCAGACTACGGGATCACTTACATCCCAGAAGGATCCCATTTTGTTCAGGAACAATTCCCTGACCTGGTGAATCAGCTTGTGATAGACTTCGTCAGTAAACATGCATGAGATAGCAACAAAAACAAGGTGCAATTTGACAAATCCCCAGACTGCAAAAGGTAACAGTTGAGCACTGCGTTCACTGATGTGCACCACTAAAGAGTTGACGTTGTAACGTCGTGCTCATGATGGTATCGCAAACTATTTTAGTGTTGTATAAATAAATGTGCAACTGAAGAAAATTATCCTCTTTTTTTCAGATTTAATACTACA] [+] EMBL AK071470 [CATATCAATGGATCAGAGGATTGAGCACTCCTACCTGCCCATCAGAGGCCTGAAGCTTCACATAGCTCACATTGGAAAAGGTGAAGCTGCAACTCTGCTCTTCGTTCATGGCTTCCCTGAGGTGTGGTACTCATGGAGGCACCAGATGATTGCAGCAGCAGCAGCCGGGTTCCGTGCTATTGCACTTGATTTCCCAGGCTATGGCCTCTCGGAGCCACCGGCTGACCTAACACAGGCGTCATGGCAGGGCCTGATGAATGACCTCTTGGCCATTCTAGACTCGCTGTCGATTCCCAAGGTGTTCCTTGTTGCAAAGGATTTTGGAGTCAAACCAGCATATGATCTTGCCCTCTGCCATCCGGACCGCGTATGTGGTATTGTGAGCTTAGGTGTGCCACCTCTTGTGGAAAGCCTCAGTTTCAGTGGACTTCCTGAGGGATTTTACATACACAGATGGAGGGAACCTGGGAGAGCAGAGGCGGATTTTGGCCGATTCGACACGAGGAGGATCTTGCGCACAATCTACATCCTCTTCTCCAGGAGTGAGATTCCAGTTGCCAAGCAAGGACAAGAGATCATGGACCTTGCAGATGAATCAACACCGATGCCTCAGTGGTTCACCGAAGAAGACCTCTCAGCTTACACCGACCTGTATGAGAAATCAGGTCTCATGACTGCTATCCAAATTCCATATAGGACCAAGGCTGCAAAAGCAGAAGGTGCTAATCCAAGGTTTGAAATGCCAATGTTTGTGATTATGGGTCAGAAAGACTACATCCTCAAGTTTCCAGCACTGAAGGAATATATGTCAAGTGAAAAACTGAAAGAAATTGCTCCAGACTACGGGATCACTTACATCCCAGAAGGATCCCATTTTGTTCAGGAACAATTCCCTGACCTGGTGAATCAGCTTGTGATAGACTTCGTCAGTAAACATGCATGAGATAGCAACAAAAACAAGGTGCAATTTGACAAATCCCCAGACTGCAAAAGGTAACAGTTGAGCACTGCGTTCACTGATGTGCACCACTAAAGAGTTGACGTTGTAACGTCGTGCTCATGATGGTATCGCAAACTATTTTAGTGTTGTATAAATAAATGTGCAACTGAAGAAAATTATCCTCTTTTTTTCAGATTTAATACTACA] consensusID : consensus_3771#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 639 fasta sequence [TTTAATATAGACCATGAAAATTCAGTAACGTTATTTGACTGATGAACGTACAGAGGGAATCTTTTTCAGTTAACATTTTGCAGCGTTGCTTGGAGTATTAAAATACAGACAGCAGAAGACATCAGCATCTTGTCTCTGGCTACCACAAACTGACAAAAACAGCAGAAGACATCAGCAGAAGATGCTTCACACAAAGTGTGCGCATCTTTGTGCCATCCATCCGTTACTAGCCTGACCAAAAGTTCGGCCCATAAATTGCTATAATCCTATATAATCTCAAGCAAATCAGACTGACGTTGGAGAGAACATATCAATGGATCAGAGGATTGAGCACTCCTACCTGCCCATCAGAGGCCTGAAGCTTCACATAGCTCACATTGGAAAAGGTCTGAATCTTACCTCATTTTTGTTGACATCAGCATCTCTCTGCTTTTTTTTGCTCTTCCGAAAGAATGCAGCTCAGCTTCTTGATTTGGTTATTCCAGGTGAAGCTGCAACTCTGCTCTTCGTTCATGGCTTCCCTGAGGTGTGGTACTCATGGAGGCACCAGATGATTGCAGCAGCAGCAGCCGGGTTCCGTGCTATTGCACTTGATTTCCCAGGCTATGGCCTCTCGGAGCCACCGGCTGACCTACACAG] [+] EMBL CF303570 [TTTAATATAGACCATGAAAATTCAGTAACGTTATTTGACTGATGAACGTACAGAGGGAATCTTTTTCAGTTAACATTTTGCAGCGTTGCTTGGAGTATTAAAATACAGACAGCAGAAGACATCAGCATCTTGTCTCTGGCTACCACAAACTGACAAAAACAGCAGAAGACATCAGCAGAAGATGCTTCACACAAAGTGTGCGCATCTTTGTGCCATCCATCCGTTACTAGCCTGACCAAAAGTTCGGCCCATAAATTGCTATAATCCTATATAATCTCAAGCAAATCAGACTGACGTTGGAGAGAACATATCAATGGATCAGAGGATTGAGCACTCCTACCTGCCCATCAGAGGCCTGAAGCTTCACATAGCTCACATTGGAAAAGGTCTGAATCTTACCTCATTTTTGTTGACATCAGCATCTCTCTGCTTTTTTTTGCTCTTCCGAAAGAATGCAGCTCAGCTTCTTGATTTGGTTATTCCAGGTGAAGCTGCAACTCTGCTCTTCGTTCATGGCTTCCCTGAGGTGTGGTACTCATGGAGGCACCAGATGATTGCAGCAGCAGCAGCCGGGTTCCGTGCTATTGCACTTGATTTCCCAGGCTATGGCCTCTCGGAGCCACCGGCTGACCTACACAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3771#0 CATATCAATGGATCAGAGGATTGAGCACTCCTACCTGCCCATCAGAGGCCTGAAGCTTCA 60 consensus_3771#1 ------------------------------------------------------------ consensus_3771#0 CATAGCTCACATTGGAAAAGGTGAAGCTGCAACTCTGCTCTTCGTTCATGGCTTCCCTGA 120 consensus_3771#1 ------------------------------------------------------------ consensus_3771#0 GGTGTGGTACTCATGGAGGCACCAGATGATTGCAGCAGCAGCAGCCGGGTTCCGTGCTAT 180 consensus_3771#1 ------------------------------------------------------------ consensus_3771#0 TGCACTTGATTTCCCAGGCTATGGCCTCTCGGAGCCACCGGCTGACCTAACACAGGCGTC 240 consensus_3771#1 ------------------------------------------------------------ consensus_3771#0 ATGGCAGGGCCTGATGAATGACCTCTTGGCCATTCTAGACTCGCTGTCGATTCCCAAGGT 300 consensus_3771#1 ------------------------------------------------------------ consensus_3771#0 GTTCCTTGTTGCAAAGGATTTTGGAGTCAAACCAGCATATGATCTTGCCCTCTGCCATCC 360 consensus_3771#1 ------------------------------------------------------------ consensus_3771#0 GGACCGCGTATGTGGTATTGTGAGCTTAGGTGTGCCACCTCTTGTGGAAAGCCTCAGT-T 419 consensus_3771#1 ---------------------------------------TTTAATATAGACCATGAAAAT 21 * * * * * * * * * consensus_3771#0 TCAGTGGACTTCCTGAGGGATTTTACATACACAGATGGAGGGAACCTGGGAGAGCAGAGG 479 consensus_3771#1 TCAGTAACGTTATTTGACTGATGAACGTACA------GAGGGAATCTTTTTCAGTTAACA 75 ***** ** * * ** **** ******* ** ** * consensus_3771#0 CGGATTTTGGCCGATTCGACACGAGGAGGATCTTGCGCACAATCTACATCCTCTTCTCCA 539 consensus_3771#1 -----TTTTGCAGCGTTGCTTGGAGTATTAAAATACAGACAGCAGAAGACATCAGCATCT 130 *** ** * * * *** * * * * *** * * ** * * consensus_3771#0 GGAGTGAGATTCCAGTTGCCAAGCAAGGACAAGAGATCATGGACCTTGCAGATGAATCAA 599 consensus_3771#1 TGTCTCTGGCTACCACAAACTGACAAAAACAGCAGAAGACATCAGCAGAAGATGCTTCA- 189 * * * * * * *** *** *** * * ***** *** consensus_3771#0 CACCGATGCCTCAGTGGTTCACCGAAGAAGACCTCTCAGCTTACACCGACCTGTATGAGA 659 consensus_3771#1 CACAAA---GTGTGCGCATCTTTGTG-----CCATCCATCCGTTACTAGCCTG-ACCAAA 240 *** * * * * ** * ** ** * ** **** * * * consensus_3771#0 AATCAGGTCTCATGACTGCTATCCAAATTCCATATAGGACCAAGGCTGCAAAAGCAGAAG 719 consensus_3771#1 AGTTCGGCCCATAAATTGCTAT---AATCCTATATAATCTCAAGC-----AAATCAGA-- 290 * * ** * * ****** *** * ***** **** *** **** consensus_3771#0 GTGCTAATCCAAGGTTTGAAATGCCAATGTTTGTGATTATGGGTCAGAAAGACTACATCC 779 consensus_3771#1 ---CTGACGTTGGAGAGAACATATCAATGGATCAGAGGATTG---AGCACTCCTACCTGC 344 ** * * * ** ***** * ** ** * ** * **** * * consensus_3771#0 TCAAGTTTCCAGCACTGAAGGAATATATGTCAAGTGAAAAACTGAAAGAAATTGCTCCAG 839 consensus_3771#1 CCA---TCAGAGGCCTGAAGCTTCACAT----AGCTCACATTGGAAAAGGTCTGAATCTT 397 ** * ** ****** * ** ** * * **** ** * consensus_3771#0 ACTACGGGATCACTTACATCCCAGAAGGATCCCATTTTGTTCAGGAACAATTCCCTGACC 899 consensus_3771#1 ACCTCATTTTTGTTGACATC-----AGCATCTCTCTGCTTTTTTTTGCTCTTCCGAAAGA 452 ** * * * ***** ** *** * * ** * **** * consensus_3771#0 TGGTGAATCAGCTTGTGATAGACTTCGTCAGTAAACATGCATGAGATAGCAACAAAAACA 959 consensus_3771#1 ATGCAGCTCAGCTTCT---TGATTTGGTTATTCCAGGT----GAAGCTGCAAC-----TC 500 * ******* * ** ** ** * * * * ** ***** consensus_3771#0 AGGTGCAATTTGACAAATCCCCAGACTGCAAAAGGTAACAGTTGAGCACTGCGTTCACTG 1019 consensus_3771#1 TGCTCTTCGTTCATGGCTTCCCTGAG---GTGTGGTACTCATGGAG----GCACCAGATG 553 * * ** * * *** ** **** * *** ** ** consensus_3771#0 ATGTGCACCACTAAAGAGTTGACGTTGTAACGTCGTGCTCATGATGGTATCGCAAACTAT 1079 consensus_3771#1 AT-TGCAGCAGCAGCAGCCGGGTTCCGTGCTATTGCACT-----TGATTTCCCAGGCTAT 607 ** **** ** * * ** * * ** ** * ** ** **** consensus_3771#0 TTTAGTGTTGTATAAATAAATGTGCAACTGAAGAAAATTATCCTCTTTTTTTCAGATTTA 1139 consensus_3771#1 GGCCTCTCGGAGCCACCGGCTGACCTACACAG---------------------------- 639 * * ** * ** * consensus_3771#0 ATACTACA 1147 consensus_3771#1 -------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||