These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3803#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2369 fasta sequence [AGAGCCACGCTACTCTCCCCACCCAGATTCCACCATTTCACGCCCCCGCCTCCACTTCGCCTTCGCCTCGCCGCGCCGCCGCCGTCTAGCCCTTCCGCGTAGGCCCAGGCGGCCGGGCCGGCGGGAAGCGGCGGCGAGCTCCTCCCCTCTGATGGCGCCGCAGCTGCAGGGCTGCTACGCGGTCTCGTCCTGGCCCCGGCTCCCGCGGCTGCCCCCGTGGCCCTGCGCCTCCCACGCGCAGCGGCGGCGGGTGCTGCGCCTCCTGCCGCCGCGGCGCCGCTGCGCCGGTGCGGTCCGGGTGGTCGCGGAGGCTGGCCCGGCCCTGGCAATAGACCGCGTCGCGGAGGAGGCGGACGTGCGGTTTCCGGGGGATGTGGAGGGGGTTCCGGGCCAGCAGCAGCAGCGGGAGGAGGAGGAGGATGCAGTGGATGAGAGGGAGAGGTTGAGGCGGATGCGGATCTCGAAGGCGAACAAGGGGAACACGCCGTGGAACAAGGGCAGGAAGCACACCCCAGAGACGCTGCAGAGGATTCGGGAGAGAACCAGGATTGCGATGCAGGATCCCAAGGTTAAGAAAAAGTTGATGCATCTGGGACATGCACAGAGCGAAGAGACAAGAATAAAGATATCCATGGGAGTGAGGCGAGGATGGAACTTGCGTTTACAGAAATTAATGATCCAGGATGGTTGCTTTGTGGAGTGGAGAGACATGATAGCAGATGCTGCTAGGAAGGGCTTTGCTGGTGGAATATCCCTACAATGGAATTCATATAAAATCTTGACTGAGCAGATGCGGCAGGAGTGGTTGGAAAAATTCCAGAAAAGAAGATCAATGCCTCGGCCAACAGGTAATCGACGAGCACCAAAATCTCCAGAGCAGCGGAGAAAAATTGCAGAAGCCATTGCTGCGAAGTGGCTAGATAAGGAATACCGTGAACGTGTATGCAGTGGAATTGCTAGCTACCATGGAACATCTTCTGGAACTAAAGTACCACGAAAGCCAAGATCTGCCAGAGAACCTGGTTCAAAGAGAGATACTGTGAAAAAGAAACCTATTCAATCCAGATCAGCTGGATTGGAGGATGCATGTGGAACGACTCCCACAGTTAAGAGAAAGAAAAGTGCAACTCCTTACAAAGATCCAATGGCTGGTGAAAAACTAGAGATGATAACAAAGATTCGAGCTCAAAGGGCAGCCCTAGAAATAGAAAAGAAAGAAGCTATTAAAAGGGCTAGGTCACTGATTGCAGAAGCTGAGAAGGCTGCAAATGCTCTGGAGACTGTTGCTTCCACAAGCCCTTTTGCTCAAGCATCACTTATAGAAGCTAGAAAGCTTGTTACAGAGGCTAGATTATCACTTCAACACGTTGATGATGAAGGGCCTGCAGATAGTGCTTCTGATGATGCATCACAAGACTCAGGTGCGTCTGATTTGCACAATCACGACATGGCAAATCAAAATGACGTGATCAAGCAAGAGAATAAACCAGTCAATGGGATGGAGCTTCCTCCAAGCAATGTTAATGGCAGAGATTTCTATTTTGACGTGTCGACTCTCACTGAAACAGATCACCTTAGAGATTATCAGAGAATAGAAAATTCTATGGAAAGAGCCTATCTGCTTCCTTCCGCTTCTTCAGCTATTCAAGACGTGAACGAAAATCACAGGATGAAAGATTTTAACGCACATCAATTAATGGTTAATGATGAATCAATAACAATTGACCAAATTGCATCTGAAGTAGCAGAAATTTATCCTGACGAGCCACAGGAGGATGACACGCTACCTGTGCAGAAGTCTAAAATGAGGTGGGTACGTGGGCGACTAGTTGAAGTGGAAGAATAAACAGTTACCAGAATTATATTGGTTGACTAAACTGTTCAAGATATCATTATCTTGCATTCCGCTTCTGCTTTGATTACTGTTGGTATGGACCAAAATGGGAAATGATTGCTGATCTTGGCACGTATTCATGGTGCATTCAACCATGGGAATTAGTCGGGAATACGCCATGACAGAGCCTATTATATTCTGAGGTGAGATGCTTGTAATTAGTAGTTGCCAACTTTAGATATTTTCCTCTTCTTGAATGTAGTCAGGTTAGCCAAACTGAAATCCTAAAATCACGGTGTGGTGGATGCATTTATCTTGTATTAGAACATTTTGTAGCTGTCAGATTGAGGTCCTACGGATAGCCCTAACACAGATTTCATTAAGTCAAATCATACGAGGTTGTCTTGTAAGATAAGTCAAATCATACGAGGTCGTCTTGTAAGATATTCTGTAGCTATCATTTTTTTTCTAGGTTATCTTGTACCTGAGTTCATTTGTGAACTTGTATCGAGAGAACTACTGTTTCTGGCTTTCT] [+] EMBL AK068249 [AGAGCCACGCTACTCTCCCCACCCAGATTCCACCATTTCACGCCCCCGCCTCCACTTCGCCTTCGCCTCGCCGCGCCGCCGCCGTCTAGCCCTTCCGCGTAGGCCCAGGCGGCCGGGCCGGCGGGAAGCGGCGGCGAGCTCCTCCCCTCTGATGGCGCCGCAGCTGCAGGGCTGCTACGCGGTCTCGTCCTGGCCCCGGCTCCCGCGGCTGCCCCCGTGGCCCTGCGCCTCCCACGCGCAGCGGCGGCGGGTGCTGCGCCTCCTGCCGCCGCGGCGCCGCTGCGCCGGTGCGGTCCGGGTGGTCGCGGAGGCTGGCCCGGCCCTGGCAATAGACCGCGTCGCGGAGGAGGCGGACGTGCGGTTTCCGGGGGATGTGGAGGGGGTTCCGGGCCAGCAGCAGCAGCGGGAGGAGGAGGAGGATGCAGTGGATGAGAGGGAGAGGTTGAGGCGGATGCGGATCTCGAAGGCGAACAAGGGGAACACGCCGTGGAACAAGGGCAGGAAGCACACCCCAGAGACGCTGCAGAGGATTCGGGAGAGAACCAGGATTGCGATGCAGGATCCCAAGGTTAAGAAAAAGTTGATGCATCTGGGACATGCACAGAGCGAAGAGACAAGAATAAAGATATCCATGGGAGTGAGGCGAGGATGGAACTTGCGTTTACAGAAATTAATGATCCAGGATGGTTGCTTTGTGGAGTGGAGAGACATGATAGCAGATGCTGCTAGGAAGGGCTTTGCTGGTGGAATATCCCTACAATGGAATTCATATAAAATCTTGACTGAGCAGATGCGGCAGGAGTGGTTGGAAAAATTCCAGAAAAGAAGATCAATGCCTCGGCCAACAGGTAATCGACGAGCACCAAAATCTCCAGAGCAGCGGAGAAAAATTGCAGAAGCCATTGCTGCGAAGTGGCTAGATAAGGAATACCGTGAACGTGTATGCAGTGGAATTGCTAGCTACCATGGAACATCTTCTGGAACTAAAGTACCACGAAAGCCAAGATCTGCCAGAGAACCTGGTTCAAAGAGAGATACTGTGAAAAAGAAACCTATTCAATCCAGATCAGCTGGATTGGAGGATGCATGTGGAACGACTCCCACAGTTAAGAGAAAGAAAAGTGCAACTCCTTACAAAGATCCAATGGCTGGTGAAAAACTAGAGATGATAACAAAGATTCGAGCTCAAAGGGCAGCCCTAGAAATAGAAAAGAAAGAAGCTATTAAAAGGGCTAGGTCACTGATTGCAGAAGCTGAGAAGGCTGCAAATGCTCTGGAGACTGTTGCTTCCACAAGCCCTTTTGCTCAAGCATCACTTATAGAAGCTAGAAAGCTTGTTACAGAGGCTAGATTATCACTTCAACACGTTGATGATGAAGGGCCTGCAGATAGTGCTTCTGATGATGCATCACAAGACTCAGGTGCGTCTGATTTGCACAATCACGACATGGCAAATCAAAATGACGTGATCAAGCAAGAGAATAAACCAGTCAATGGGATGGAGCTTCCTCCAAGCAATGTTAATGGCAGAGATTTCTATTTTGACGTGTCGACTCTCACTGAAACAGATCACCTTAGAGATTATCAGAGAATAGAAAATTCTATGGAAAGAGCCTATCTGCTTCCTTCCGCTTCTTCAGCTATTCAAGACGTGAACGAAAATCACAGGATGAAAGATTTTAACGCACATCAATTAATGGTTAATGATGAATCAATAACAATTGACCAAATTGCATCTGAAGTAGCAGAAATTTATCCTGACGAGCCACAGGAGGATGACACGCTACCTGTGCAGAAGTCTAAAATGAGGTGGGTACGTGGGCGACTAGTTGAAGTGGAAGAATAAACAGTTACCAGAATTATATTGGTTGACTAAACTGTTCAAGATATCATTATCTTGCATTCCGCTTCTGCTTTGATTACTGTTGGTATGGACCAAAATGGGAAATGATTGCTGATCTTGGCACGTATTCATGGTGCATTCAACCATGGGAATTAGTCGGGAATACGCCATGACAGAGCCTATTATATTCTGAGGTGAGATGCTTGTAATTAGTAGTTGCCAACTTTAGATATTTTCCTCTTCTTGAATGTAGTCAGGTTAGCCAAACTGAAATCCTAAAATCACGGTGTGGTGGATGCATTTATCTTGTATTAGAACATTTTGTAGCTGTCAGATTGAGGTCCTACGGATAGCCCTAACACAGATTTCATTAAGTCAAATCATACGAGGTTGTCTTGTAAGATAAGTCAAATCATACGAGGTCGTCTTGTAAGATATTCTGTAGCTATCATTTTTTTTCTAGGTTATCTTGTACCTGAGTTCATTTGTGAACTTGTATCGAGAGAACTACTGTTTCTGGCTTTCT] consensusID : consensus_3803#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 594 fasta sequence [GAGGATGCAGTGGATGAGAGGGAGAGGTTGAGGCGGATGCGGATCTCGAAGGCGAACAAGGGGAACACGCCGTGGAACAAGGGCAGGAAGCACACCCCAGAGACGCTGCAGAGGATTCGGGAGAGAACCAGGATTGCTATGCAGGATCCCAAGGTGAAGTCATGTTAAGAAAAAGTTGATGCATCTGGGACATGCACAGAGCGAAGAGACAAGAATAAAGATATCCATGGGAGTGAGGCGAGGATGGAACTTGCGTTTACAGAAATTAATGATCTAGGATGGTTGCTTTGTGGAGTGGAGAGACATGATAGCAGATGCTGCTAGGAAGGGCTTTGCTGGTGGAATATCCCTACAATGGAATTCATATAAAATCTTGACTGAGCAGATGCGGCAGGAGTGGTTGGAAAAAGTCCAGAAAAGAAGATCAATGCCTCGGCCAACAGGTAATCGACGAGCACCAAAATCTCCAGAGCAGCGGAGAAAAATTGCAGAAGCCATTGCTGCGAAGTGGCTAGATAAGGAATACCGTGAACGTGTATGCAGTGGAATTGCTAGCTACCATGGAACATCTTCTGGAACTAAAGTACCACGAAA] [+] EMBL CF304269 [GAGGATGCAGTGGATGAGAGGGAGAGGTTGAGGCGGATGCGGATCTCGAAGGCGAACAAGGGGAACACGCCGTGGAACAAGGGCAGGAAGCACACCCCAGAGACGCTGCAGAGGATTCGGGAGAGAACCAGGATTGCTATGCAGGATCCCAAGGTGAAGTCATGTTAAGAAAAAGTTGATGCATCTGGGACATGCACAGAGCGAAGAGACAAGAATAAAGATATCCATGGGAGTGAGGCGAGGATGGAACTTGCGTTTACAGAAATTAATGATCTAGGATGGTTGCTTTGTGGAGTGGAGAGACATGATAGCAGATGCTGCTAGGAAGGGCTTTGCTGGTGGAATATCCCTACAATGGAATTCATATAAAATCTTGACTGAGCAGATGCGGCAGGAGTGGTTGGAAAAAGTCCAGAAAAGAAGATCAATGCCTCGGCCAACAGGTAATCGACGAGCACCAAAATCTCCAGAGCAGCGGAGAAAAATTGCAGAAGCCATTGCTGCGAAGTGGCTAGATAAGGAATACCGTGAACGTGTATGCAGTGGAATTGCTAGCTACCATGGAACATCTTCTGGAACTAAAGTACCACGAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3803#0 AGAGCCACGCTACTCTCCCCACCCAGATTCCACCATTTCACGCCCCCGCCTCCACTTCGC 60 consensus_3803#1 ------------------------------------------------------------ consensus_3803#0 CTTCGCCTCGCCGCGCCGCCGCCGTCTAGCCCTTCCGCGTAGGCCCAGGCGGCCGGGCCG 120 consensus_3803#1 ------------------------------------------------------------ consensus_3803#0 GCGGGAAGCGGCGGCGAGCTCCTCCCCTCTGATGGCGCCGCAGCTGCAGGGCTGCTACGC 180 consensus_3803#1 ------------------------------------------------------------ consensus_3803#0 GGTCTCGTCCTGGCCCCGGCTCCCGCGGCTGCCCCCGTGGCCCTGCGCCTCCCACGCGCA 240 consensus_3803#1 ------------------------------------------------------------ consensus_3803#0 GCGGCGGCGGGTGCTGCGCCTCCTGCCGCCGCGGCGCCGCTGCGCCGGTGCGGTCCGGGT 300 consensus_3803#1 ------------------------------------------------------------ consensus_3803#0 GGTCGCGGAGGCTGGCCCGGCCCTGGCAATAGACCGCGTCGCGGAGGAGGCGGACGTGCG 360 consensus_3803#1 ------------------------------------------------------------ consensus_3803#0 GTTTCCGGGGGATGTGGAGGGGGTTCCGGGCCAGCAGCAGCAGCGGGAGGAGGAGGAGGA 420 consensus_3803#1 -------------------------------------------------------GAGGA 5 ***** consensus_3803#0 TGCAGTGGATGAGAGGGAGAGGTTGAGGCGGATGCGGATCTCGAAGGCGAACAAGGGGAA 480 consensus_3803#1 TGCAGTGGATGAGAGGGAGAGGTTGAGGCGGATGCGGATCTCGAAGGCGAACAAGGGGAA 65 ************************************************************ consensus_3803#0 CACGCCGTGGAACAAGGGCAGGAAGCACACCCCAGAGACGCTGCAGAGGATTCGGGAGAG 540 consensus_3803#1 CACGCCGTGGAACAAGGGCAGGAAGCACACCCCAGAGACGCTGCAGAGGATTCGGGAGAG 125 ************************************************************ consensus_3803#0 AACCAGGATTGCGATGCAGGATCCCAAGGT----------TAAGAAAAAGTTGATGCATC 590 consensus_3803#1 AACCAGGATTGCTATGCAGGATCCCAAGGTGAAGTCATGTTAAGAAAAAGTTGATGCATC 185 ************ ***************** ******************** consensus_3803#0 TGGGACATGCACAGAGCGAAGAGACAAGAATAAAGATATCCATGGGAGTGAGGCGAGGAT 650 consensus_3803#1 TGGGACATGCACAGAGCGAAGAGACAAGAATAAAGATATCCATGGGAGTGAGGCGAGGAT 245 ************************************************************ consensus_3803#0 GGAACTTGCGTTTACAGAAATTAATGATCCAGGATGGTTGCTTTGTGGAGTGGAGAGACA 710 consensus_3803#1 GGAACTTGCGTTTACAGAAATTAATGATCTAGGATGGTTGCTTTGTGGAGTGGAGAGACA 305 ***************************** ****************************** consensus_3803#0 TGATAGCAGATGCTGCTAGGAAGGGCTTTGCTGGTGGAATATCCCTACAATGGAATTCAT 770 consensus_3803#1 TGATAGCAGATGCTGCTAGGAAGGGCTTTGCTGGTGGAATATCCCTACAATGGAATTCAT 365 ************************************************************ consensus_3803#0 ATAAAATCTTGACTGAGCAGATGCGGCAGGAGTGGTTGGAAAAATTCCAGAAAAGAAGAT 830 consensus_3803#1 ATAAAATCTTGACTGAGCAGATGCGGCAGGAGTGGTTGGAAAAAGTCCAGAAAAGAAGAT 425 ******************************************** *************** consensus_3803#0 CAATGCCTCGGCCAACAGGTAATCGACGAGCACCAAAATCTCCAGAGCAGCGGAGAAAAA 890 consensus_3803#1 CAATGCCTCGGCCAACAGGTAATCGACGAGCACCAAAATCTCCAGAGCAGCGGAGAAAAA 485 ************************************************************ consensus_3803#0 TTGCAGAAGCCATTGCTGCGAAGTGGCTAGATAAGGAATACCGTGAACGTGTATGCAGTG 950 consensus_3803#1 TTGCAGAAGCCATTGCTGCGAAGTGGCTAGATAAGGAATACCGTGAACGTGTATGCAGTG 545 ************************************************************ consensus_3803#0 GAATTGCTAGCTACCATGGAACATCTTCTGGAACTAAAGTACCACGAAAGCCAAGATCTG 1010 consensus_3803#1 GAATTGCTAGCTACCATGGAACATCTTCTGGAACTAAAGTACCACGAAA----------- 594 ************************************************* consensus_3803#0 CCAGAGAACCTGGTTCAAAGAGAGATACTGTGAAAAAGAAACCTATTCAATCCAGATCAG 1070 consensus_3803#1 ------------------------------------------------------------ consensus_3803#0 CTGGATTGGAGGATGCATGTGGAACGACTCCCACAGTTAAGAGAAAGAAAAGTGCAACTC 1130 consensus_3803#1 ------------------------------------------------------------ consensus_3803#0 CTTACAAAGATCCAATGGCTGGTGAAAAACTAGAGATGATAACAAAGATTCGAGCTCAAA 1190 consensus_3803#1 ------------------------------------------------------------ consensus_3803#0 GGGCAGCCCTAGAAATAGAAAAGAAAGAAGCTATTAAAAGGGCTAGGTCACTGATTGCAG 1250 consensus_3803#1 ------------------------------------------------------------ consensus_3803#0 AAGCTGAGAAGGCTGCAAATGCTCTGGAGACTGTTGCTTCCACAAGCCCTTTTGCTCAAG 1310 consensus_3803#1 ------------------------------------------------------------ consensus_3803#0 CATCACTTATAGAAGCTAGAAAGCTTGTTACAGAGGCTAGATTATCACTTCAACACGTTG 1370 consensus_3803#1 ------------------------------------------------------------ consensus_3803#0 ATGATGAAGGGCCTGCAGATAGTGCTTCTGATGATGCATCACAAGACTCAGGTGCGTCTG 1430 consensus_3803#1 ------------------------------------------------------------ consensus_3803#0 ATTTGCACAATCACGACATGGCAAATCAAAATGACGTGATCAAGCAAGAGAATAAACCAG 1490 consensus_3803#1 ------------------------------------------------------------ consensus_3803#0 TCAATGGGATGGAGCTTCCTCCAAGCAATGTTAATGGCAGAGATTTCTATTTTGACGTGT 1550 consensus_3803#1 ------------------------------------------------------------ consensus_3803#0 CGACTCTCACTGAAACAGATCACCTTAGAGATTATCAGAGAATAGAAAATTCTATGGAAA 1610 consensus_3803#1 ------------------------------------------------------------ consensus_3803#0 GAGCCTATCTGCTTCCTTCCGCTTCTTCAGCTATTCAAGACGTGAACGAAAATCACAGGA 1670 consensus_3803#1 ------------------------------------------------------------ consensus_3803#0 TGAAAGATTTTAACGCACATCAATTAATGGTTAATGATGAATCAATAACAATTGACCAAA 1730 consensus_3803#1 ------------------------------------------------------------ consensus_3803#0 TTGCATCTGAAGTAGCAGAAATTTATCCTGACGAGCCACAGGAGGATGACACGCTACCTG 1790 consensus_3803#1 ------------------------------------------------------------ consensus_3803#0 TGCAGAAGTCTAAAATGAGGTGGGTACGTGGGCGACTAGTTGAAGTGGAAGAATAAACAG 1850 consensus_3803#1 ------------------------------------------------------------ consensus_3803#0 TTACCAGAATTATATTGGTTGACTAAACTGTTCAAGATATCATTATCTTGCATTCCGCTT 1910 consensus_3803#1 ------------------------------------------------------------ consensus_3803#0 CTGCTTTGATTACTGTTGGTATGGACCAAAATGGGAAATGATTGCTGATCTTGGCACGTA 1970 consensus_3803#1 ------------------------------------------------------------ consensus_3803#0 TTCATGGTGCATTCAACCATGGGAATTAGTCGGGAATACGCCATGACAGAGCCTATTATA 2030 consensus_3803#1 ------------------------------------------------------------ consensus_3803#0 TTCTGAGGTGAGATGCTTGTAATTAGTAGTTGCCAACTTTAGATATTTTCCTCTTCTTGA 2090 consensus_3803#1 ------------------------------------------------------------ consensus_3803#0 ATGTAGTCAGGTTAGCCAAACTGAAATCCTAAAATCACGGTGTGGTGGATGCATTTATCT 2150 consensus_3803#1 ------------------------------------------------------------ consensus_3803#0 TGTATTAGAACATTTTGTAGCTGTCAGATTGAGGTCCTACGGATAGCCCTAACACAGATT 2210 consensus_3803#1 ------------------------------------------------------------ consensus_3803#0 TCATTAAGTCAAATCATACGAGGTTGTCTTGTAAGATAAGTCAAATCATACGAGGTCGTC 2270 consensus_3803#1 ------------------------------------------------------------ consensus_3803#0 TTGTAAGATATTCTGTAGCTATCATTTTTTTTCTAGGTTATCTTGTACCTGAGTTCATTT 2330 consensus_3803#1 ------------------------------------------------------------ consensus_3803#0 GTGAACTTGTATCGAGAGAACTACTGTTTCTGGCTTTCT 2369 consensus_3803#1 --------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||