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Oryza sativa
cluster # 3855 cluster # 3855       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3855#0 length = 783 sequences # 1  
consensus_3855#1 length = 500 sequences # 1  

consensusID : consensus_3855#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 783
fasta sequence
                              [TCTCCCATACCGAGTGCCCGCGATCCCCCTCCAGATCAAGCCCTCCGCCGGTGCCGTCCCACCGCCGGCCCCGTCCATCCATCAGCGTCGCCCTTCTCCTCCGCGCTGTCATTCGCTGTCGAGGCCGCCGCCTTCCCCAGTCCTAGACCTGTCGGCCCGGATAGGGATCTCACCGCCACCGTTGTCCCCATCGTCGTATCTCGCCGTCGCCGCAACCTACAAGGCTACAAGCCACGGAACCTGAAATTATTTGTATGCATGTGCATTCTCATGCTGTTGGAGATGCATGTGTGTGGCGGCGGCTGCCTGTGGGTGGCACATGCATGTGGCATTGTGATCAGTAGAGCGTCAACCCCGGCGGAGGCTGTGGGCGAGGGTGCGGCAGCTATGAGTGGCGTAGGTGTGCGGCGCGGCGGCGAGTGGAGGCACAGGTGGCTCAAGGCCAAAAGCGAGTACTATTACTGCATATACTCGTTTTGGAGAGGGATATGCTTTTAAAATGCTGCAATGCGAAACTGTGCCACTTCGCCCACGCCTCTTTCCGCACTGAGTCGATGCCGGTAGCACAACCGACGAGATAAATTTCTTTTCTTTGCAAACTCCTGTTCTTCCCAACTTCTGGAAGCCTTTTGTTCCTTTTCTATTTCAGCGAATAACAATGATATTTCACTAGGATTATACTGCAGGTTTATGCATGTTACTAGCCAATCTTANATATATCAAACTTTATTGACTGAGTTGAGTGATTAGGTGTCAAGTTGCAATTTATATATCAAACATCGG]

[+] EMBL CB634855             [TCTCCCATACCGAGTGCCCGCGATCCCCCTCCAGATCAAGCCCTCCGCCGGTGCCGTCCCACCGCCGGCCCCGTCCATCCATCAGCGTCGCCCTTCTCCTCCGCGCTGTCATTCGCTGTCGAGGCCGCCGCCTTCCCCAGTCCTAGACCTGTCGGCCCGGATAGGGATCTCACCGCCACCGTTGTCCCCATCGTCGTATCTCGCCGTCGCCGCAACCTACAAGGCTACAAGCCACGGAACCTGAAATTATTTGTATGCATGTGCATTCTCATGCTGTTGGAGATGCATGTGTGTGGCGGCGGCTGCCTGTGGGTGGCACATGCATGTGGCATTGTGATCAGTAGAGCGTCAACCCCGGCGGAGGCTGTGGGCGAGGGTGCGGCAGCTATGAGTGGCGTAGGTGTGCGGCGCGGCGGCGAGTGGAGGCACAGGTGGCTCAAGGCCAAAAGCGAGTACTATTACTGCATATACTCGTTTTGGAGAGGGATATGCTTTTAAAATGCTGCAATGCGAAACTGTGCCACTTCGCCCACGCCTCTTTCCGCACTGAGTCGATGCCGGTAGCACAACCGACGAGATAAATTTCTTTTCTTTGCAAACTCCTGTTCTTCCCAACTTCTGGAAGCCTTTTGTTCCTTTTCTATTTCAGCGAATAACAATGATATTTCACTAGGATTATACTGCAGGTTTATGCATGTTACTAGCCAATCTTANATATATCAAACTTTATTGACTGAGTTGAGTGATTAGGTGTCAAGTTGCAATTTATATATCAAACATCGG]


>consensus_3855#0 TCTCCCATACCGAGTGCCCGCGATCCCCCTCCAGATCAAGCCCTCCGCCGGTGCCGTCCC ACCGCCGGCCCCGTCCATCCATCAGCGTCGCCCTTCTCCTCCGCGCTGTCATTCGCTGTC GAGGCCGCCGCCTTCCCCAGTCCTAGACCTGTCGGCCCGGATAGGGATCTCACCGCCACC GTTGTCCCCATCGTCGTATCTCGCCGTCGCCGCAACCTACAAGGCTACAAGCCACGGAAC CTGAAATTATTTGTATGCATGTGCATTCTCATGCTGTTGGAGATGCATGTGTGTGGCGGC GGCTGCCTGTGGGTGGCACATGCATGTGGCATTGTGATCAGTAGAGCGTCAACCCCGGCG GAGGCTGTGGGCGAGGGTGCGGCAGCTATGAGTGGCGTAGGTGTGCGGCGCGGCGGCGAG TGGAGGCACAGGTGGCTCAAGGCCAAAAGCGAGTACTATTACTGCATATACTCGTTTTGG AGAGGGATATGCTTTTAAAATGCTGCAATGCGAAACTGTGCCACTTCGCCCACGCCTCTT TCCGCACTGAGTCGATGCCGGTAGCACAACCGACGAGATAAATTTCTTTTCTTTGCAAAC TCCTGTTCTTCCCAACTTCTGGAAGCCTTTTGTTCCTTTTCTATTTCAGCGAATAACAAT GATATTTCACTAGGATTATACTGCAGGTTTATGCATGTTACTAGCCAATCTTANATATAT CAAACTTTATTGACTGAGTTGAGTGATTAGGTGTCAAGTTGCAATTTATATATCAAACAT CGG



consensusID : consensus_3855#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 500
fasta sequence
                              [GCCGTCATTCGCTGTCGAGGCCGCCGCCTTCCCCAATCCTAGACCTATTGGCCCGGATAGGGGATCTCGCCGCCATCGTCGTATCTCGCCGTCGCCGCAACCTACAAGCCACGGAATCTGAAATTATTTGTATACATGTGCATTCTCATGCTGTTGGAGATGCATGTGTGTGGCGGCGGCTGCCTGTGGGTGGCACATGCATGTGGCGTCGTGGTCAGTAGAGCGTCAACCCCCGCGGAGGCTATGAGTGGCGTAGGTGTGCGGCGCGGCGGCGAGTGGAGGCGCAGGTGGCTCAAGGCCAAAAGCGAGTACTATTACTGCATATACATGTTTTGGAGAGCGATATGCGTTTAAAATGCTGCAATGCGAAACTGTGCCACTTTGCCCACGCCTCTTTCCGCACTGAGTCGATGCCGGTAGCACAACCGACGAGGTCTTCAGCGAGTGTCAAGTGTTGTGTGATGATATAGTAGGGGACATGCACTGTGAGTAGTATNTAT]

[+] EMBL CB641038             [GCCGTCATTCGCTGTCGAGGCCGCCGCCTTCCCCAATCCTAGACCTATTGGCCCGGATAGGGGATCTCGCCGCCATCGTCGTATCTCGCCGTCGCCGCAACCTACAAGCCACGGAATCTGAAATTATTTGTATACATGTGCATTCTCATGCTGTTGGAGATGCATGTGTGTGGCGGCGGCTGCCTGTGGGTGGCACATGCATGTGGCGTCGTGGTCAGTAGAGCGTCAACCCCCGCGGAGGCTATGAGTGGCGTAGGTGTGCGGCGCGGCGGCGAGTGGAGGCGCAGGTGGCTCAAGGCCAAAAGCGAGTACTATTACTGCATATACATGTTTTGGAGAGCGATATGCGTTTAAAATGCTGCAATGCGAAACTGTGCCACTTTGCCCACGCCTCTTTCCGCACTGAGTCGATGCCGGTAGCACAACCGACGAGGTCTTCAGCGAGTGTCAAGTGTTGTGTGATGATATAGTAGGGGACATGCACTGTGAGTAGTATNTAT]


>consensus_3855#1 GCCGTCATTCGCTGTCGAGGCCGCCGCCTTCCCCAATCCTAGACCTATTGGCCCGGATAG GGGATCTCGCCGCCATCGTCGTATCTCGCCGTCGCCGCAACCTACAAGCCACGGAATCTG AAATTATTTGTATACATGTGCATTCTCATGCTGTTGGAGATGCATGTGTGTGGCGGCGGC TGCCTGTGGGTGGCACATGCATGTGGCGTCGTGGTCAGTAGAGCGTCAACCCCCGCGGAG GCTATGAGTGGCGTAGGTGTGCGGCGCGGCGGCGAGTGGAGGCGCAGGTGGCTCAAGGCC AAAAGCGAGTACTATTACTGCATATACATGTTTTGGAGAGCGATATGCGTTTAAAATGCT GCAATGCGAAACTGTGCCACTTTGCCCACGCCTCTTTCCGCACTGAGTCGATGCCGGTAG CACAACCGACGAGGTCTTCAGCGAGTGTCAAGTGTTGTGTGATGATATAGTAGGGGACAT GCACTGTGAGTAGTATNTAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3855#0      TCTCCCATACCGAGTGCCCGCGATCCCCCTCCAGATCAAGCCCTCCGCCGGTGCCGTCCC 60
consensus_3855#1      ------------------------------------------------------------
                                                                                  

consensus_3855#0      ACCGCCGGCCCCGTCCATCCATCAGCGTCGCCCTTCTCCTCCGCGCTGTCATTCGCTGTC 120
consensus_3855#1      --------------------------------------------GCCGTCATTCGCTGTC 16
                                                                  ** *************

consensus_3855#0      GAGGCCGCCGCCTTCCCCAGTCCTAGACCTGTCGGCCCGGATAGGG-ATCTCACCGCCAC 179
consensus_3855#1      GAGGCCGCCGCCTTCCCCAATCCTAGACCTATTGGCCCGGATAGGGGATCTCGCCGCCA- 75
                      ******************* ********** * ************* ***** ****** 

consensus_3855#0      CGTTGTCCCCATCGTCGTATCTCGCCGTCGCCGCAACCTACAAGGCTACAAGCCACGGAA 239
consensus_3855#1      -----------TCGTCGTATCTCGCCGTCGCCGCAACCTACAAG--------CCACGGAA 116
                                 *********************************        ********

consensus_3855#0      CCTGAAATTATTTGTATGCATGTGCATTCTCATGCTGTTGGAGATGCATGTGTGTGGCGG 299
consensus_3855#1      TCTGAAATTATTTGTATACATGTGCATTCTCATGCTGTTGGAGATGCATGTGTGTGGCGG 176
                       **************** ******************************************

consensus_3855#0      CGGCTGCCTGTGGGTGGCACATGCATGTGGCATTGTGATCAGTAGAGCGTCAACCCCGGC 359
consensus_3855#1      CGGCTGCCTGTGGGTGGCACATGCATGTGGCGTCGTGGTCAGTAGAGCGTCAACCCCCGC 236
                      ******************************* * *** ******************* **

consensus_3855#0      GGAGGCTGTGGGCGAGGGTGCGGCAGCTATGAGTGGCGTAGGTGTGCGGCGCGGCGGCGA 419
consensus_3855#1      GGAGGCT---------------------ATGAGTGGCGTAGGTGTGCGGCGCGGCGGCGA 275
                      *******                     ********************************

consensus_3855#0      GTGGAGGCACAGGTGGCTCAAGGCCAAAAGCGAGTACTATTACTGCATATACTCGTTTTG 479
consensus_3855#1      GTGGAGGCGCAGGTGGCTCAAGGCCAAAAGCGAGTACTATTACTGCATATACATGTTTTG 335
                      ******** *******************************************  ******

consensus_3855#0      GAGAGGGATATGCTTTTAAAATGCTGCAATGCGAAACTGTGCCACTTCGCCCACGCCTCT 539
consensus_3855#1      GAGAGCGATATGCGTTTAAAATGCTGCAATGCGAAACTGTGCCACTTTGCCCACGCCTCT 395
                      ***** ******* ********************************* ************

consensus_3855#0      TTCCGCACTGAGTCGATGCCGGTAGCACAACCGACGAGATAAATTTCTTTTCTTTGCAAA 599
consensus_3855#1      TTCCGCACTGAGTCGATGCCGGTAGCACAACCGACGAGGT---CTTCAGCGAGTGTCAAG 452
                      ************************************** *    ***      *  *** 

consensus_3855#0      C-TCCTGTTCTTCCCAACTTCTGGAAGCCTTTTGTTCCTTTTCTATTTCAGCGAATAACA 658
consensus_3855#1      TGTTGTGTGATGATATAGTAGGGGACATGCACTGTGAGTAGTATNTAT------------ 500
                        *  ***  *     * *   ***       ***   *  * * * *            

consensus_3855#0      ATGATATTTCACTAGGATTATACTGCAGGTTTATGCATGTTACTAGCCAATCTTANATAT 718
consensus_3855#1      ------------------------------------------------------------
                                                                                  

consensus_3855#0      ATCAAACTTTATTGACTGAGTTGAGTGATTAGGTGTCAAGTTGCAATTTATATATCAAAC 778
consensus_3855#1      ------------------------------------------------------------
                                                                                  

consensus_3855#0      ATCGG 783
consensus_3855#1      -----
                           




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)