These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3855#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 783 fasta sequence [TCTCCCATACCGAGTGCCCGCGATCCCCCTCCAGATCAAGCCCTCCGCCGGTGCCGTCCCACCGCCGGCCCCGTCCATCCATCAGCGTCGCCCTTCTCCTCCGCGCTGTCATTCGCTGTCGAGGCCGCCGCCTTCCCCAGTCCTAGACCTGTCGGCCCGGATAGGGATCTCACCGCCACCGTTGTCCCCATCGTCGTATCTCGCCGTCGCCGCAACCTACAAGGCTACAAGCCACGGAACCTGAAATTATTTGTATGCATGTGCATTCTCATGCTGTTGGAGATGCATGTGTGTGGCGGCGGCTGCCTGTGGGTGGCACATGCATGTGGCATTGTGATCAGTAGAGCGTCAACCCCGGCGGAGGCTGTGGGCGAGGGTGCGGCAGCTATGAGTGGCGTAGGTGTGCGGCGCGGCGGCGAGTGGAGGCACAGGTGGCTCAAGGCCAAAAGCGAGTACTATTACTGCATATACTCGTTTTGGAGAGGGATATGCTTTTAAAATGCTGCAATGCGAAACTGTGCCACTTCGCCCACGCCTCTTTCCGCACTGAGTCGATGCCGGTAGCACAACCGACGAGATAAATTTCTTTTCTTTGCAAACTCCTGTTCTTCCCAACTTCTGGAAGCCTTTTGTTCCTTTTCTATTTCAGCGAATAACAATGATATTTCACTAGGATTATACTGCAGGTTTATGCATGTTACTAGCCAATCTTANATATATCAAACTTTATTGACTGAGTTGAGTGATTAGGTGTCAAGTTGCAATTTATATATCAAACATCGG] [+] EMBL CB634855 [TCTCCCATACCGAGTGCCCGCGATCCCCCTCCAGATCAAGCCCTCCGCCGGTGCCGTCCCACCGCCGGCCCCGTCCATCCATCAGCGTCGCCCTTCTCCTCCGCGCTGTCATTCGCTGTCGAGGCCGCCGCCTTCCCCAGTCCTAGACCTGTCGGCCCGGATAGGGATCTCACCGCCACCGTTGTCCCCATCGTCGTATCTCGCCGTCGCCGCAACCTACAAGGCTACAAGCCACGGAACCTGAAATTATTTGTATGCATGTGCATTCTCATGCTGTTGGAGATGCATGTGTGTGGCGGCGGCTGCCTGTGGGTGGCACATGCATGTGGCATTGTGATCAGTAGAGCGTCAACCCCGGCGGAGGCTGTGGGCGAGGGTGCGGCAGCTATGAGTGGCGTAGGTGTGCGGCGCGGCGGCGAGTGGAGGCACAGGTGGCTCAAGGCCAAAAGCGAGTACTATTACTGCATATACTCGTTTTGGAGAGGGATATGCTTTTAAAATGCTGCAATGCGAAACTGTGCCACTTCGCCCACGCCTCTTTCCGCACTGAGTCGATGCCGGTAGCACAACCGACGAGATAAATTTCTTTTCTTTGCAAACTCCTGTTCTTCCCAACTTCTGGAAGCCTTTTGTTCCTTTTCTATTTCAGCGAATAACAATGATATTTCACTAGGATTATACTGCAGGTTTATGCATGTTACTAGCCAATCTTANATATATCAAACTTTATTGACTGAGTTGAGTGATTAGGTGTCAAGTTGCAATTTATATATCAAACATCGG] consensusID : consensus_3855#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 500 fasta sequence [GCCGTCATTCGCTGTCGAGGCCGCCGCCTTCCCCAATCCTAGACCTATTGGCCCGGATAGGGGATCTCGCCGCCATCGTCGTATCTCGCCGTCGCCGCAACCTACAAGCCACGGAATCTGAAATTATTTGTATACATGTGCATTCTCATGCTGTTGGAGATGCATGTGTGTGGCGGCGGCTGCCTGTGGGTGGCACATGCATGTGGCGTCGTGGTCAGTAGAGCGTCAACCCCCGCGGAGGCTATGAGTGGCGTAGGTGTGCGGCGCGGCGGCGAGTGGAGGCGCAGGTGGCTCAAGGCCAAAAGCGAGTACTATTACTGCATATACATGTTTTGGAGAGCGATATGCGTTTAAAATGCTGCAATGCGAAACTGTGCCACTTTGCCCACGCCTCTTTCCGCACTGAGTCGATGCCGGTAGCACAACCGACGAGGTCTTCAGCGAGTGTCAAGTGTTGTGTGATGATATAGTAGGGGACATGCACTGTGAGTAGTATNTAT] [+] EMBL CB641038 [GCCGTCATTCGCTGTCGAGGCCGCCGCCTTCCCCAATCCTAGACCTATTGGCCCGGATAGGGGATCTCGCCGCCATCGTCGTATCTCGCCGTCGCCGCAACCTACAAGCCACGGAATCTGAAATTATTTGTATACATGTGCATTCTCATGCTGTTGGAGATGCATGTGTGTGGCGGCGGCTGCCTGTGGGTGGCACATGCATGTGGCGTCGTGGTCAGTAGAGCGTCAACCCCCGCGGAGGCTATGAGTGGCGTAGGTGTGCGGCGCGGCGGCGAGTGGAGGCGCAGGTGGCTCAAGGCCAAAAGCGAGTACTATTACTGCATATACATGTTTTGGAGAGCGATATGCGTTTAAAATGCTGCAATGCGAAACTGTGCCACTTTGCCCACGCCTCTTTCCGCACTGAGTCGATGCCGGTAGCACAACCGACGAGGTCTTCAGCGAGTGTCAAGTGTTGTGTGATGATATAGTAGGGGACATGCACTGTGAGTAGTATNTAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3855#0 TCTCCCATACCGAGTGCCCGCGATCCCCCTCCAGATCAAGCCCTCCGCCGGTGCCGTCCC 60 consensus_3855#1 ------------------------------------------------------------ consensus_3855#0 ACCGCCGGCCCCGTCCATCCATCAGCGTCGCCCTTCTCCTCCGCGCTGTCATTCGCTGTC 120 consensus_3855#1 --------------------------------------------GCCGTCATTCGCTGTC 16 ** ************* consensus_3855#0 GAGGCCGCCGCCTTCCCCAGTCCTAGACCTGTCGGCCCGGATAGGG-ATCTCACCGCCAC 179 consensus_3855#1 GAGGCCGCCGCCTTCCCCAATCCTAGACCTATTGGCCCGGATAGGGGATCTCGCCGCCA- 75 ******************* ********** * ************* ***** ****** consensus_3855#0 CGTTGTCCCCATCGTCGTATCTCGCCGTCGCCGCAACCTACAAGGCTACAAGCCACGGAA 239 consensus_3855#1 -----------TCGTCGTATCTCGCCGTCGCCGCAACCTACAAG--------CCACGGAA 116 ********************************* ******** consensus_3855#0 CCTGAAATTATTTGTATGCATGTGCATTCTCATGCTGTTGGAGATGCATGTGTGTGGCGG 299 consensus_3855#1 TCTGAAATTATTTGTATACATGTGCATTCTCATGCTGTTGGAGATGCATGTGTGTGGCGG 176 **************** ****************************************** consensus_3855#0 CGGCTGCCTGTGGGTGGCACATGCATGTGGCATTGTGATCAGTAGAGCGTCAACCCCGGC 359 consensus_3855#1 CGGCTGCCTGTGGGTGGCACATGCATGTGGCGTCGTGGTCAGTAGAGCGTCAACCCCCGC 236 ******************************* * *** ******************* ** consensus_3855#0 GGAGGCTGTGGGCGAGGGTGCGGCAGCTATGAGTGGCGTAGGTGTGCGGCGCGGCGGCGA 419 consensus_3855#1 GGAGGCT---------------------ATGAGTGGCGTAGGTGTGCGGCGCGGCGGCGA 275 ******* ******************************** consensus_3855#0 GTGGAGGCACAGGTGGCTCAAGGCCAAAAGCGAGTACTATTACTGCATATACTCGTTTTG 479 consensus_3855#1 GTGGAGGCGCAGGTGGCTCAAGGCCAAAAGCGAGTACTATTACTGCATATACATGTTTTG 335 ******** ******************************************* ****** consensus_3855#0 GAGAGGGATATGCTTTTAAAATGCTGCAATGCGAAACTGTGCCACTTCGCCCACGCCTCT 539 consensus_3855#1 GAGAGCGATATGCGTTTAAAATGCTGCAATGCGAAACTGTGCCACTTTGCCCACGCCTCT 395 ***** ******* ********************************* ************ consensus_3855#0 TTCCGCACTGAGTCGATGCCGGTAGCACAACCGACGAGATAAATTTCTTTTCTTTGCAAA 599 consensus_3855#1 TTCCGCACTGAGTCGATGCCGGTAGCACAACCGACGAGGT---CTTCAGCGAGTGTCAAG 452 ************************************** * *** * *** consensus_3855#0 C-TCCTGTTCTTCCCAACTTCTGGAAGCCTTTTGTTCCTTTTCTATTTCAGCGAATAACA 658 consensus_3855#1 TGTTGTGTGATGATATAGTAGGGGACATGCACTGTGAGTAGTATNTAT------------ 500 * *** * * * *** *** * * * * * consensus_3855#0 ATGATATTTCACTAGGATTATACTGCAGGTTTATGCATGTTACTAGCCAATCTTANATAT 718 consensus_3855#1 ------------------------------------------------------------ consensus_3855#0 ATCAAACTTTATTGACTGAGTTGAGTGATTAGGTGTCAAGTTGCAATTTATATATCAAAC 778 consensus_3855#1 ------------------------------------------------------------ consensus_3855#0 ATCGG 783 consensus_3855#1 ----- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||