These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3858#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1782 fasta sequence [CGCGTCCTTCCCCGTCTCCGGCCACACCTCGCCGCCGGCCACCTCCGCCGCCGCCGCCTCATGCTACCCCTTCACACCGCGTCCGGAGCCGGCCTGCCACCGTCGTGTCCGCCGCCTCCGGTGTCACCGACGGCTACCACTCCACCATCCGCTCCCTCAACTCCCGCGGCCGCCACGTCCCCCGCAAATCCCTCGGCCAGAACTACATGCTGAACTCGAAGGTGAACGAGGAGCTGGTGGCGGCGGCGGGGGTGGAGGAGGGGGACGTCGTGCTCGAGATCGGCCCGGGGACTGGGTCTCTTACGGCCGCTCTCCTCGATGCCGGCGCCACCGTCTTCGCCGTAGAGAAGGTCGGCGGCATTGCTAGTCATTGGCTTGAATTGGGCTAAGAGCTGCTGAGACCGTGTCATTGTTCCTTTTCACTAGTTTATTTGGTCCATAATCTGCAATGCCATATATCATGTTTGCTTTGGTAACAGGATAAGCATATGGCCACCCTTGTGAATGATAGGTTTGGATCCACAGAACAATTGAAGGTAGTTTCATGTTCTTAGACCAACACGTTGGATTGTTTCATCCATTTCTTTGACTATTGGTGTTTCTAGAATTGGTTACATGGTAATCCATGATGTTGCTTATTTGTTCCTCAGAATAACCACCCTTAGTTTATAACTCTGATTTTTTTCCCCAAGTCCAAGTGCAGGACCACTCTTATGCTGTGCTGAGATAAAAATAATGCTACTTATCTACACATGCTGCATTATGGAAAAGCTCTGAAGTGTGAATTCTTCTAGTTTCAATATTTCCCTGTCCAGCATTTGTTGTACACAGTTTCCTTCTGCTATAGCATAATGCTCTTATGACCAAATTGCACGCTAGCTTAACCTGCTTTACATTCTAATAACCAAATCAGGCATGTCCCATACATGGTAATAAGATTCACATATTATGGCTTCTCGTGACTTATGGACAAAATAAACTTAAAACGGGTTTTACTACATAGTCTAGTTGGGTCTCAGGACTTGAGCATATGAACAAGTATACGTTGTAACAGATGGTTGTAGTAAGATCTAAGCTCTTAAGATTCTAATAGCACTTTGCTCTTGTCATGGTCAGTAAGCATTTTTTTTTATGTTTCCGTGTTTCTATAGTTGCTCTTCTTGACATCCAATATGACCAATACTGCCATTTAAACTATCCACTCTTCTTCCAGTCATTGAAGATTGATATGTGGATAATCCTATTGCATATTTTATGAAACTAGAAATGCGAATGTGATATGGACAATATGCTGTTGCCTTTACCAAAATCTAGTCTTCATCTGATGTGTAATGATTTTAAGAATATAATGCAGATCATTGAAGAAGATATCACAAAATTTAATGTCCGCTCCCATTTTCTTCCTTTCCTGGAGGAAAAATCCCATCACACGAGAAAATATGCCAAGGTGGTGTCAAATTTACCATTCAATGTAAGTACTGAAGTTGTCAAACTTCTTCTCCCAATGGGAGATGTCTTTTCTGTCATGGTGCTTTTGCTTCAGGATGAAACGGCATTGCGCTTTGCAGATGCTTCAATACAAACACCAGAGTACCGACCTATCAATGTGTTTGTGAATTTCTACTCAGAACCAGAATACAAGTTCAAAGTTGAGAGGACAAATTTTTTCCCTCAACCGAAGGTTGATGGTGCTGTTATAAGCTTTAAGCTAAAGAATTCAGGGGATTATCCACCAGTTGGTTCTCACAAAGGTTTCTTTTCAATGGTGAACTCTGCTTTCAG] [+] EMBL AK073966 [CGCGTCCTTCCCCGTCTCCGGCCACACCTCGCCGCCGGCCACCTCCGCCGCCGCCGCCTCATGCTACCCCTTCACACCGCGTCCGGAGCCGGCCTGCCACCGTCGTGTCCGCCGCCTCCGGTGTCACCGACGGCTACCACTCCACCATCCGCTCCCTCAACTCCCGCGGCCGCCACGTCCCCCGCAAATCCCTCGGCCAGAACTACATGCTGAACTCGAAGGTGAACGAGGAGCTGGTGGCGGCGGCGGGGGTGGAGGAGGGGGACGTCGTGCTCGAGATCGGCCCGGGGACTGGGTCTCTTACGGCCGCTCTCCTCGATGCCGGCGCCACCGTCTTCGCCGTAGAGAAGGTCGGCGGCATTGCTAGTCATTGGCTTGAATTGGGCTAAGAGCTGCTGAGACCGTGTCATTGTTCCTTTTCACTAGTTTATTTGGTCCATAATCTGCAATGCCATATATCATGTTTGCTTTGGTAACAGGATAAGCATATGGCCACCCTTGTGAATGATAGGTTTGGATCCACAGAACAATTGAAGGTAGTTTCATGTTCTTAGACCAACACGTTGGATTGTTTCATCCATTTCTTTGACTATTGGTGTTTCTAGAATTGGTTACATGGTAATCCATGATGTTGCTTATTTGTTCCTCAGAATAACCACCCTTAGTTTATAACTCTGATTTTTTTCCCCAAGTCCAAGTGCAGGACCACTCTTATGCTGTGCTGAGATAAAAATAATGCTACTTATCTACACATGCTGCATTATGGAAAAGCTCTGAAGTGTGAATTCTTCTAGTTTCAATATTTCCCTGTCCAGCATTTGTTGTACACAGTTTCCTTCTGCTATAGCATAATGCTCTTATGACCAAATTGCACGCTAGCTTAACCTGCTTTACATTCTAATAACCAAATCAGGCATGTCCCATACATGGTAATAAGATTCACATATTATGGCTTCTCGTGACTTATGGACAAAATAAACTTAAAACGGGTTTTACTACATAGTCTAGTTGGGTCTCAGGACTTGAGCATATGAACAAGTATACGTTGTAACAGATGGTTGTAGTAAGATCTAAGCTCTTAAGATTCTAATAGCACTTTGCTCTTGTCATGGTCAGTAAGCATTTTTTTTTATGTTTCCGTGTTTCTATAGTTGCTCTTCTTGACATCCAATATGACCAATACTGCCATTTAAACTATCCACTCTTCTTCCAGTCATTGAAGATTGATATGTGGATAATCCTATTGCATATTTTATGAAACTAGAAATGCGAATGTGATATGGACAATATGCTGTTGCCTTTACCAAAATCTAGTCTTCATCTGATGTGTAATGATTTTAAGAATATAATGCAGATCATTGAAGAAGATATCACAAAATTTAATGTCCGCTCCCATTTTCTTCCTTTCCTGGAGGAAAAATCCCATCACACGAGAAAATATGCCAAGGTGGTGTCAAATTTACCATTCAATGTAAGTACTGAAGTTGTCAAACTTCTTCTCCCAATGGGAGATGTCTTTTCTGTCATGGTGCTTTTGCTTCAGGATGAAACGGCATTGCGCTTTGCAGATGCTTCAATACAAACACCAGAGTACCGACCTATCAATGTGTTTGTGAATTTCTACTCAGAACCAGAATACAAGTTCAAAGTTGAGAGGACAAATTTTTTCCCTCAACCGAAGGTTGATGGTGCTGTTATAAGCTTTAAGCTAAAGAATTCAGGGGATTATCCACCAGTTGGTTCTCACAAAGGTTTCTTTTCAATGGTGAACTCTGCTTTCAG] consensusID : consensus_3858#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 828 fasta sequence [CCCCACCCGCACCGCGTCCTTCCCCGTCTCCGGCCACACCTCGCCGCCGGCCACCTCCGCCGCCGCCGCCTCATGCTACCCCTTCACACCGCGTCCGGAGCCGGCCTGCCACCGTCGTGTCCGCCGCCTCCGGTGTCACCGACGGCTACCACTCCACCATCCGCTCCCTCAACTCCCGCGGCCGCCACGTCCCCCGCAAATCCCTCGGCCAGAACTACATGCTGAACTCGAAGGTGAACGAGGAGCTGGTGGCGGCGGCGGGGGTGGAGGAGGGGGACGTCGTGCTCGAGATCGGCCCGGGGACTGGGTCTCTTACGGCCGCTCTCCTCGATGCCGGCGCCACCGTCTTCGCCGTAGAGAAGGATAAGCATATGGCCACCCTTGTGAATGATAGGTTTGGATCCACAGAACAATTGAAGGTAGTTTCATGTTCTTAGACCAACACGTTGGATTGTTTCATCCATTTCTTTGACTATTGGTGTTTCTAGAATTGGTTACATGGTAATCCATGATGTTGCTTATTTGTTCCTCAGAATAACCACCCTTAGTTTATAACTCTGATTTTTTTCCCCAAGTCCAAGTGCAGGACCATTCTTATGCTGTGCTGAGATAAAAATAATGCTACTTATCTACACATGCTGCATTATGGAAAAGCTCTGAAGTGTGAATTCTTCTAGTTTCAATATTTCCCTGTCCAGCATTTGTTGTACACAGTTTCCTTCTGCTATAGCATAATGCTCTTATGACCAAATTGCACGCTAGCTTAACCTGCTTTACATTCTAATAAACAAATCAGGCATGTCCCATACATGGTAATAAGATTCACAT] [+] EMBL CB634878 [CCCCACCCGCACCGCGTCCTTCCCCGTCTCCGGCCACACCTCGCCGCCGGCCACCTCCGCCGCCGCCGCCTCATGCTACCCCTTCACACCGCGTCCGGAGCCGGCCTGCCACCGTCGTGTCCGCCGCCTCCGGTGTCACCGACGGCTACCACTCCACCATCCGCTCCCTCAACTCCCGCGGCCGCCACGTCCCCCGCAAATCCCTCGGCCAGAACTACATGCTGAACTCGAAGGTGAACGAGGAGCTGGTGGCGGCGGCGGGGGTGGAGGAGGGGGACGTCGTGCTCGAGATCGGCCCGGGGACTGGGTCTCTTACGGCCGCTCTCCTCGATGCCGGCGCCACCGTCTTCGCCGTAGAGAAGGATAAGCATATGGCCACCCTTGTGAATGATAGGTTTGGATCCACAGAACAATTGAAGGTAGTTTCATGTTCTTAGACCAACACGTTGGATTGTTTCATCCATTTCTTTGACTATTGGTGTTTCTAGAATTGGTTACATGGTAATCCATGATGTTGCTTATTTGTTCCTCAGAATAACCACCCTTAGTTTATAACTCTGATTTTTTTCCCCAAGTCCAAGTGCAGGACCATTCTTATGCTGTGCTGAGATAAAAATAATGCTACTTATCTACACATGCTGCATTATGGAAAAGCTCTGAAGTGTGAATTCTTCTAGTTTCAATATTTCCCTGTCCAGCATTTGTTGTACACAGTTTCCTTCTGCTATAGCATAATGCTCTTATGACCAAATTGCACGCTAGCTTAACCTGCTTTACATTCTAATAAACAAATCAGGCATGTCCCATACATGGTAATAAGATTCACAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3858#0 ------------CGCGTCCTTCCCCGTCTCCGGCCACACCTCGCCGCCGGCCACCTCCGC 48 consensus_3858#1 CCCCACCCGCACCGCGTCCTTCCCCGTCTCCGGCCACACCTCGCCGCCGGCCACCTCCGC 60 ************************************************ consensus_3858#0 CGCCGCCGCCTCATGCTACCCCTTCACACCGCGTCCGGAGCCGGCCTGCCACCGTCGTGT 108 consensus_3858#1 CGCCGCCGCCTCATGCTACCCCTTCACACCGCGTCCGGAGCCGGCCTGCCACCGTCGTGT 120 ************************************************************ consensus_3858#0 CCGCCGCCTCCGGTGTCACCGACGGCTACCACTCCACCATCCGCTCCCTCAACTCCCGCG 168 consensus_3858#1 CCGCCGCCTCCGGTGTCACCGACGGCTACCACTCCACCATCCGCTCCCTCAACTCCCGCG 180 ************************************************************ consensus_3858#0 GCCGCCACGTCCCCCGCAAATCCCTCGGCCAGAACTACATGCTGAACTCGAAGGTGAACG 228 consensus_3858#1 GCCGCCACGTCCCCCGCAAATCCCTCGGCCAGAACTACATGCTGAACTCGAAGGTGAACG 240 ************************************************************ consensus_3858#0 AGGAGCTGGTGGCGGCGGCGGGGGTGGAGGAGGGGGACGTCGTGCTCGAGATCGGCCCGG 288 consensus_3858#1 AGGAGCTGGTGGCGGCGGCGGGGGTGGAGGAGGGGGACGTCGTGCTCGAGATCGGCCCGG 300 ************************************************************ consensus_3858#0 GGACTGGGTCTCTTACGGCCGCTCTCCTCGATGCCGGCGCCACCGTCTTCGCCGTAGAGA 348 consensus_3858#1 GGACTGGGTCTCTTACGGCCGCTCTCCTCGATGCCGGCGCCACCGTCTTCGCCGTAGAGA 360 ************************************************************ consensus_3858#0 AGGTCGGCGGCATTGCTAGTCATTGGCTTGAATTGGGCTAAGAGCTGCTGAGACCGTGTC 408 consensus_3858#1 AGG--------------------------------------------------------- 363 *** consensus_3858#0 ATTGTTCCTTTTCACTAGTTTATTTGGTCCATAATCTGCAATGCCATATATCATGTTTGC 468 consensus_3858#1 ------------------------------------------------------------ consensus_3858#0 TTTGGTAACAGGATAAGCATATGGCCACCCTTGTGAATGATAGGTTTGGATCCACAGAAC 528 consensus_3858#1 ------------ATAAGCATATGGCCACCCTTGTGAATGATAGGTTTGGATCCACAGAAC 411 ************************************************ consensus_3858#0 AATTGAAGGTAGTTTCATGTTCTTAGACCAACACGTTGGATTGTTTCATCCATTTCTTTG 588 consensus_3858#1 AATTGAAGGTAGTTTCATGTTCTTAGACCAACACGTTGGATTGTTTCATCCATTTCTTTG 471 ************************************************************ consensus_3858#0 ACTATTGGTGTTTCTAGAATTGGTTACATGGTAATCCATGATGTTGCTTATTTGTTCCTC 648 consensus_3858#1 ACTATTGGTGTTTCTAGAATTGGTTACATGGTAATCCATGATGTTGCTTATTTGTTCCTC 531 ************************************************************ consensus_3858#0 AGAATAACCACCCTTAGTTTATAACTCTGATTTTTTTCCCCAAGTCCAAGTGCAGGACCA 708 consensus_3858#1 AGAATAACCACCCTTAGTTTATAACTCTGATTTTTTTCCCCAAGTCCAAGTGCAGGACCA 591 ************************************************************ consensus_3858#0 CTCTTATGCTGTGCTGAGATAAAAATAATGCTACTTATCTACACATGCTGCATTATGGAA 768 consensus_3858#1 TTCTTATGCTGTGCTGAGATAAAAATAATGCTACTTATCTACACATGCTGCATTATGGAA 651 *********************************************************** consensus_3858#0 AAGCTCTGAAGTGTGAATTCTTCTAGTTTCAATATTTCCCTGTCCAGCATTTGTTGTACA 828 consensus_3858#1 AAGCTCTGAAGTGTGAATTCTTCTAGTTTCAATATTTCCCTGTCCAGCATTTGTTGTACA 711 ************************************************************ consensus_3858#0 CAGTTTCCTTCTGCTATAGCATAATGCTCTTATGACCAAATTGCACGCTAGCTTAACCTG 888 consensus_3858#1 CAGTTTCCTTCTGCTATAGCATAATGCTCTTATGACCAAATTGCACGCTAGCTTAACCTG 771 ************************************************************ consensus_3858#0 CTTTACATTCTAATAACCAAATCAGGCATGTCCCATACATGGTAATAAGATTCACATATT 948 consensus_3858#1 CTTTACATTCTAATAAACAAATCAGGCATGTCCCATACATGGTAATAAGATTCACAT--- 828 **************** **************************************** consensus_3858#0 ATGGCTTCTCGTGACTTATGGACAAAATAAACTTAAAACGGGTTTTACTACATAGTCTAG 1008 consensus_3858#1 ------------------------------------------------------------ consensus_3858#0 TTGGGTCTCAGGACTTGAGCATATGAACAAGTATACGTTGTAACAGATGGTTGTAGTAAG 1068 consensus_3858#1 ------------------------------------------------------------ consensus_3858#0 ATCTAAGCTCTTAAGATTCTAATAGCACTTTGCTCTTGTCATGGTCAGTAAGCATTTTTT 1128 consensus_3858#1 ------------------------------------------------------------ consensus_3858#0 TTTATGTTTCCGTGTTTCTATAGTTGCTCTTCTTGACATCCAATATGACCAATACTGCCA 1188 consensus_3858#1 ------------------------------------------------------------ consensus_3858#0 TTTAAACTATCCACTCTTCTTCCAGTCATTGAAGATTGATATGTGGATAATCCTATTGCA 1248 consensus_3858#1 ------------------------------------------------------------ consensus_3858#0 TATTTTATGAAACTAGAAATGCGAATGTGATATGGACAATATGCTGTTGCCTTTACCAAA 1308 consensus_3858#1 ------------------------------------------------------------ consensus_3858#0 ATCTAGTCTTCATCTGATGTGTAATGATTTTAAGAATATAATGCAGATCATTGAAGAAGA 1368 consensus_3858#1 ------------------------------------------------------------ consensus_3858#0 TATCACAAAATTTAATGTCCGCTCCCATTTTCTTCCTTTCCTGGAGGAAAAATCCCATCA 1428 consensus_3858#1 ------------------------------------------------------------ consensus_3858#0 CACGAGAAAATATGCCAAGGTGGTGTCAAATTTACCATTCAATGTAAGTACTGAAGTTGT 1488 consensus_3858#1 ------------------------------------------------------------ consensus_3858#0 CAAACTTCTTCTCCCAATGGGAGATGTCTTTTCTGTCATGGTGCTTTTGCTTCAGGATGA 1548 consensus_3858#1 ------------------------------------------------------------ consensus_3858#0 AACGGCATTGCGCTTTGCAGATGCTTCAATACAAACACCAGAGTACCGACCTATCAATGT 1608 consensus_3858#1 ------------------------------------------------------------ consensus_3858#0 GTTTGTGAATTTCTACTCAGAACCAGAATACAAGTTCAAAGTTGAGAGGACAAATTTTTT 1668 consensus_3858#1 ------------------------------------------------------------ consensus_3858#0 CCCTCAACCGAAGGTTGATGGTGCTGTTATAAGCTTTAAGCTAAAGAATTCAGGGGATTA 1728 consensus_3858#1 ------------------------------------------------------------ consensus_3858#0 TCCACCAGTTGGTTCTCACAAAGGTTTCTTTTCAATGGTGAACTCTGCTTTCAG 1782 consensus_3858#1 ------------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||