These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3893#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 770 fasta sequence [AAATGGAATGAATAAAATGATAAGAGACCTAGCAGCCTATAAAATGTATACAGAATATACCAATGAACAAATATGGTTTACAATCAACATGGATGTCAGTAATTTCCCTATGGGTATATATTCACAAGGAAGCAATCTCAAATTCTCTCAGTATTATAGTATAACTAATGCTGTATGTACTGTGGTGAGGAGTGCATCCGGCAAACCCATTCAGCGCTTCAAGGAAGAGAACCACAGAGGATTCCACTCTTCAGGGTTCCAAGCTCCAACTATCAGGAGGGGCCAAAAGGCCAAGCAATAAAATCCATGTCCAAAGCAAAGCTCCCGCGTGGTTACTAAAACAATAACCAGTGCTTCTTCCTAGGCTTGTATTTGCTAGGGAGATCTCGAGCATCATATAGCGAGTTATAGTGAACTTCCGACCAGAAACTTAGCCAAATTTCTCTCTGTGGTGCCTGATACTGTGGAACAATTTCAACAAAACATGTGTCTCTGAATGATGTTAGAAGGCATATTTTTGCAGCAAACTTATCAGCAGCAGCTTGCAATGTGACATGGTCGCCCCATTCACCAGATTTTTTCATCTTCTTGCAATAATGTTTATATTTCATTGGAACATAACCTTCATACAAAGAGTTACATGCCTTGAGCTGCTTCACTATTTCCTTTCGAACATGCTTGTGATAATCGGGTGATCGATATAGCTGGTCTGATAGTGCACGGAACTGACAATTGCCATCGCCAGAAACTCTCACTTCATACAAGCCATA] [+] EMBL CB667355 [AAATGGAATGAATAAAATGATAAGAGACCTAGCAGCCTATAAAATGTATACAGAATATACCAATGAACAAATATGGTTTACAATCAACATGGATGTCAGTAATTTCCCTATGGGTATATATTCACAAGGAAGCAATCTCAAATTCTCTCAGTATTATAGTATAACTAATGCTGTATGTACTGTGGTGAGGAGTGCATCCGGCAAACCCATTCAGCGCTTCAAGGAAGAGAACCACAGAGGATTCCACTCTTCAGGGTTCCAAGCTCCAACTATCAGGAGGGGCCAAAAGGCCAAGCAATAAAATCCATGTCCAAAGCAAAGCTCCCGCGTGGTTACTAAAACAATAACCAGTGCTTCTTCCTAGGCTTGTATTTGCTAGGGAGATCTCGAGCATCATATAGCGAGTTATAGTGAACTTCCGACCAGAAACTTAGCCAAATTTCTCTCTGTGGTGCCTGATACTGTGGAACAATTTCAACAAAACATGTGTCTCTGAATGATGTTAGAAGGCATATTTTTGCAGCAAACTTATCAGCAGCAGCTTGCAATGTGACATGGTCGCCCCATTCACCAGATTTTTTCATCTTCTTGCAATAATGTTTATATTTCATTGGAACATAACCTTCATACAAAGAGTTACATGCCTTGAGCTGCTTCACTATTTCCTTTCGAACATGCTTGTGATAATCGGGTGATCGATATAGCTGGTCTGATAGTGCACGGAACTGACAATTGCCATCGCCAGAAACTCTCACTTCATACAAGCC ] [-] EMBL OSS12606A [ AACTTAGCCAAATTTCTCTCTGTGGTGCCTGATACTGTGGAACAATTTCAACAAAACATGTGTCTCTGAATGATGTTAGAAGGCATATTTTTGCAGCAAACTTATCAGCAGCAGCTTGCAATGTGACATGGTCGCCCCATTCACCAGATTTTTTCATCTTCTTGCAATAATGTTTATATTTCATTGGAACATAACCTTCATACAAAGAGTTACATGCCTTGAGCTGCTTCACTATTTCCTTTCGAACATGCTTGTGATAATCGGGTGATCGATATAGCTGGTCTGATAGTGCACGGAACTGACAATTGCCATCGCCAGAAACTCTCACTTCATACAAGCCATA] consensusID : consensus_3893#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 423 fasta sequence [GTCTTGTAGTTCCGTGCACTATCAGACCAGCTATATCGATCACCCGATTATCACAAGCATGTTCGAAAGGAAATAGTGAAGCAGGTACAGCAGATCACCTTCTGGAATTACCGGTCTTTAGTTTATATTACTGTGCTCATATGTTTAAACTGCAATATCTTTATCAGATGCCGTAACACAATGAATCTGTCATTCTCTGCTCTAGTTATTGCATTTTTTTTTCTCCAGGTGATGAATGAAGAAACAAAATTTCATCAATATATTGTAGTTATATGCTGATAAACTCCTGTTAGAGATACATGCATTCTTACCCATGCTGTTTTTCTACTTGTCTAGCTCAAGGCATGTAACTCTTTGTATGAAGNTNNNGTTNNNNNGAAATATNNACATTATTGCANNNNNNNNAAAAAGNNNNNACTTCTG] [+] EMBL CF196890 [GTCTTGTAGTTCCGTGCACTATCAGACCAGCTATATCGATCACCCGATTATCACAAGCATGTTCGAAAGGAAATAGTGAAGCAGGTACAGCAGATCACCTTCTGGAATTACCGGTCTTTAGTTTATATTACTGTGCTCATATGTTTAAACTGCAATATCTTTATCAGATGCCGTAACACAATGAATCTGTCATTCTCTGCTCTAGTTATTGCATTTTTTTTTCTCCAGGTGATGAATGAAGAAACAAAATTTCATCAATATATTGTAGTTATATGCTGATAAACTCCTGTTAGAGATACATGCATTCTTACCCATGCTGTTTTTCTACTTGTCTAGCTCAAGGCATGTAACTCTTTGTATGAAGNTNNNGTTNNNNNGAAATATNNACATTATTGCANNNNNNNNAAAAAGNNNNNACTTCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3893#0 AAATGGAATGAATAAAATGATAAGAGACCTAGCAGCCTATAAAATGTATACAGAATATAC 60 consensus_3893#1 ------------------------------------------------------------ consensus_3893#0 CAATGAACAAATATGGTTTACAATCAACATGGATGTCAGTAATTTCCCTATGGGTATATA 120 consensus_3893#1 ------------------------------------------------------------ consensus_3893#0 TTCACAAGGAAGCAATCTCAAATTCTCTCAGTATTATAGTATAACTAATGCTGTATGTAC 180 consensus_3893#1 ------------------------------------------------------------ consensus_3893#0 TGTGGTGAGGAGTGCATCCGGCAAACCCATTCAGCGCTTCAAGGAAGAGAACCACAGAGG 240 consensus_3893#1 ------------------------------------------------------------ consensus_3893#0 ATTCCACTCTTCAGGGTTCCAAGCTCCAACTATCAGGAGGGGCCAAAAGGCCAAGCAATA 300 consensus_3893#1 -------GTCTTGTAGTTCCGTGCACTATCAGACCAGCTATATCGATCACCCGATTATCA 53 * ***** ** * * * * * * * ** * * * consensus_3893#0 AAATCCATGTCCAAAGCAAAGCTCCCGCGTGGTTACTAAAACAATAACCAGTGCTTCTTC 360 consensus_3893#1 CAAGC-ATGTTCGAAAGGAAATAGTGAAGCAGGTAC--AGCAGATCACCTTCTGGAATTA 110 ** * **** * ** ** * * *** * ** *** ** consensus_3893#0 CTAGGCTTGTATTTGCTAGGGAGATCTCGAGCATCATATAGCGAGTTATAGTGAACTTCC 420 consensus_3893#1 CCGGTCTTTAGTTTATATTACTGTGCTCATATGTT-TAAACTGCAATATCTTTATCAGAT 169 * * *** *** * *** * ** * * *** * * * consensus_3893#0 GACCAGAAACTTAGCCAAATTTCTCTCTGTGGTGCCTGATACTGTGGAACAATTTCAACA 480 consensus_3893#1 G--CCGTAACACAATGAATCTGTCATTCTCTGCTCTAGTTATTGCATTTTTTTTTCTCCA 227 * * * *** * ** * * * * * ** ** **** ** consensus_3893#0 AAACATGTGTCTCTGAATGATGTTAGAA-GGCATATTTTTGCAGCAAACTTATCAGCAGC 539 consensus_3893#1 GGTGATGAATGAAGAAACAAAATTTCATCAATATATTGTAGTTATATGCTGATAAACTCC 287 *** * ** * ** * ***** * * * ** ** * * * consensus_3893#0 AGCTTGCAATGTGACATGGTCGCCCCATTCACCAGATTTTTTCATCTTCTTGCAATAATG 599 consensus_3893#1 TGTTAGAGAT---ACATG-CATTCTTACCCATGCTGTTTTTCTACTTGTCTAGCTCAAGG 343 * * * ** ***** * * ** ***** * * * ** * consensus_3893#0 TTTATATTTCATTGGAACATAACCTTCATACAAAGAGTTACATGCCTTGAGCTGCTTCAC 659 consensus_3893#1 CATGTAACTCTTTGTATGAAGNTNNNGTTNNNNNGAAATATNNACATT--ATTGCANNNN 401 * ** ** *** * * * ** ** * ** *** consensus_3893#0 TATTTCCTTTCGAACATGCTTGTGATAATCGGGTGATCGATATAGCTGGTCTGATAGTGC 719 consensus_3893#1 NNNNAAAAAGNNNNNACTTCTG-------------------------------------- 423 * ** consensus_3893#0 ACGGAACTGACAATTGCCATCGCCAGAAACTCTCACTTCATACAAGCCATA 770 consensus_3893#1 --------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||