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These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 3893 cluster # 3893       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3893#0 length = 770 sequences # 2  
consensus_3893#1 length = 423 sequences # 1  

consensusID : consensus_3893#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 770
fasta sequence
                              [AAATGGAATGAATAAAATGATAAGAGACCTAGCAGCCTATAAAATGTATACAGAATATACCAATGAACAAATATGGTTTACAATCAACATGGATGTCAGTAATTTCCCTATGGGTATATATTCACAAGGAAGCAATCTCAAATTCTCTCAGTATTATAGTATAACTAATGCTGTATGTACTGTGGTGAGGAGTGCATCCGGCAAACCCATTCAGCGCTTCAAGGAAGAGAACCACAGAGGATTCCACTCTTCAGGGTTCCAAGCTCCAACTATCAGGAGGGGCCAAAAGGCCAAGCAATAAAATCCATGTCCAAAGCAAAGCTCCCGCGTGGTTACTAAAACAATAACCAGTGCTTCTTCCTAGGCTTGTATTTGCTAGGGAGATCTCGAGCATCATATAGCGAGTTATAGTGAACTTCCGACCAGAAACTTAGCCAAATTTCTCTCTGTGGTGCCTGATACTGTGGAACAATTTCAACAAAACATGTGTCTCTGAATGATGTTAGAAGGCATATTTTTGCAGCAAACTTATCAGCAGCAGCTTGCAATGTGACATGGTCGCCCCATTCACCAGATTTTTTCATCTTCTTGCAATAATGTTTATATTTCATTGGAACATAACCTTCATACAAAGAGTTACATGCCTTGAGCTGCTTCACTATTTCCTTTCGAACATGCTTGTGATAATCGGGTGATCGATATAGCTGGTCTGATAGTGCACGGAACTGACAATTGCCATCGCCAGAAACTCTCACTTCATACAAGCCATA]

[+] EMBL CB667355             [AAATGGAATGAATAAAATGATAAGAGACCTAGCAGCCTATAAAATGTATACAGAATATACCAATGAACAAATATGGTTTACAATCAACATGGATGTCAGTAATTTCCCTATGGGTATATATTCACAAGGAAGCAATCTCAAATTCTCTCAGTATTATAGTATAACTAATGCTGTATGTACTGTGGTGAGGAGTGCATCCGGCAAACCCATTCAGCGCTTCAAGGAAGAGAACCACAGAGGATTCCACTCTTCAGGGTTCCAAGCTCCAACTATCAGGAGGGGCCAAAAGGCCAAGCAATAAAATCCATGTCCAAAGCAAAGCTCCCGCGTGGTTACTAAAACAATAACCAGTGCTTCTTCCTAGGCTTGTATTTGCTAGGGAGATCTCGAGCATCATATAGCGAGTTATAGTGAACTTCCGACCAGAAACTTAGCCAAATTTCTCTCTGTGGTGCCTGATACTGTGGAACAATTTCAACAAAACATGTGTCTCTGAATGATGTTAGAAGGCATATTTTTGCAGCAAACTTATCAGCAGCAGCTTGCAATGTGACATGGTCGCCCCATTCACCAGATTTTTTCATCTTCTTGCAATAATGTTTATATTTCATTGGAACATAACCTTCATACAAAGAGTTACATGCCTTGAGCTGCTTCACTATTTCCTTTCGAACATGCTTGTGATAATCGGGTGATCGATATAGCTGGTCTGATAGTGCACGGAACTGACAATTGCCATCGCCAGAAACTCTCACTTCATACAAGCC   ]
[-] EMBL OSS12606A            [                                                                                                                                                                                                                                                                                                                                                                                                                                           AACTTAGCCAAATTTCTCTCTGTGGTGCCTGATACTGTGGAACAATTTCAACAAAACATGTGTCTCTGAATGATGTTAGAAGGCATATTTTTGCAGCAAACTTATCAGCAGCAGCTTGCAATGTGACATGGTCGCCCCATTCACCAGATTTTTTCATCTTCTTGCAATAATGTTTATATTTCATTGGAACATAACCTTCATACAAAGAGTTACATGCCTTGAGCTGCTTCACTATTTCCTTTCGAACATGCTTGTGATAATCGGGTGATCGATATAGCTGGTCTGATAGTGCACGGAACTGACAATTGCCATCGCCAGAAACTCTCACTTCATACAAGCCATA]


>consensus_3893#0 AAATGGAATGAATAAAATGATAAGAGACCTAGCAGCCTATAAAATGTATACAGAATATAC CAATGAACAAATATGGTTTACAATCAACATGGATGTCAGTAATTTCCCTATGGGTATATA TTCACAAGGAAGCAATCTCAAATTCTCTCAGTATTATAGTATAACTAATGCTGTATGTAC TGTGGTGAGGAGTGCATCCGGCAAACCCATTCAGCGCTTCAAGGAAGAGAACCACAGAGG ATTCCACTCTTCAGGGTTCCAAGCTCCAACTATCAGGAGGGGCCAAAAGGCCAAGCAATA AAATCCATGTCCAAAGCAAAGCTCCCGCGTGGTTACTAAAACAATAACCAGTGCTTCTTC CTAGGCTTGTATTTGCTAGGGAGATCTCGAGCATCATATAGCGAGTTATAGTGAACTTCC GACCAGAAACTTAGCCAAATTTCTCTCTGTGGTGCCTGATACTGTGGAACAATTTCAACA AAACATGTGTCTCTGAATGATGTTAGAAGGCATATTTTTGCAGCAAACTTATCAGCAGCA GCTTGCAATGTGACATGGTCGCCCCATTCACCAGATTTTTTCATCTTCTTGCAATAATGT TTATATTTCATTGGAACATAACCTTCATACAAAGAGTTACATGCCTTGAGCTGCTTCACT ATTTCCTTTCGAACATGCTTGTGATAATCGGGTGATCGATATAGCTGGTCTGATAGTGCA CGGAACTGACAATTGCCATCGCCAGAAACTCTCACTTCATACAAGCCATA



consensusID : consensus_3893#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 423
fasta sequence
                              [GTCTTGTAGTTCCGTGCACTATCAGACCAGCTATATCGATCACCCGATTATCACAAGCATGTTCGAAAGGAAATAGTGAAGCAGGTACAGCAGATCACCTTCTGGAATTACCGGTCTTTAGTTTATATTACTGTGCTCATATGTTTAAACTGCAATATCTTTATCAGATGCCGTAACACAATGAATCTGTCATTCTCTGCTCTAGTTATTGCATTTTTTTTTCTCCAGGTGATGAATGAAGAAACAAAATTTCATCAATATATTGTAGTTATATGCTGATAAACTCCTGTTAGAGATACATGCATTCTTACCCATGCTGTTTTTCTACTTGTCTAGCTCAAGGCATGTAACTCTTTGTATGAAGNTNNNGTTNNNNNGAAATATNNACATTATTGCANNNNNNNNAAAAAGNNNNNACTTCTG]

[+] EMBL CF196890             [GTCTTGTAGTTCCGTGCACTATCAGACCAGCTATATCGATCACCCGATTATCACAAGCATGTTCGAAAGGAAATAGTGAAGCAGGTACAGCAGATCACCTTCTGGAATTACCGGTCTTTAGTTTATATTACTGTGCTCATATGTTTAAACTGCAATATCTTTATCAGATGCCGTAACACAATGAATCTGTCATTCTCTGCTCTAGTTATTGCATTTTTTTTTCTCCAGGTGATGAATGAAGAAACAAAATTTCATCAATATATTGTAGTTATATGCTGATAAACTCCTGTTAGAGATACATGCATTCTTACCCATGCTGTTTTTCTACTTGTCTAGCTCAAGGCATGTAACTCTTTGTATGAAGNTNNNGTTNNNNNGAAATATNNACATTATTGCANNNNNNNNAAAAAGNNNNNACTTCTG]


>consensus_3893#1 GTCTTGTAGTTCCGTGCACTATCAGACCAGCTATATCGATCACCCGATTATCACAAGCAT GTTCGAAAGGAAATAGTGAAGCAGGTACAGCAGATCACCTTCTGGAATTACCGGTCTTTA GTTTATATTACTGTGCTCATATGTTTAAACTGCAATATCTTTATCAGATGCCGTAACACA ATGAATCTGTCATTCTCTGCTCTAGTTATTGCATTTTTTTTTCTCCAGGTGATGAATGAA GAAACAAAATTTCATCAATATATTGTAGTTATATGCTGATAAACTCCTGTTAGAGATACA TGCATTCTTACCCATGCTGTTTTTCTACTTGTCTAGCTCAAGGCATGTAACTCTTTGTAT GAAGNTNNNGTTNNNNNGAAATATNNACATTATTGCANNNNNNNNAAAAAGNNNNNACTT CTG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3893#0      AAATGGAATGAATAAAATGATAAGAGACCTAGCAGCCTATAAAATGTATACAGAATATAC 60
consensus_3893#1      ------------------------------------------------------------
                                                                                  

consensus_3893#0      CAATGAACAAATATGGTTTACAATCAACATGGATGTCAGTAATTTCCCTATGGGTATATA 120
consensus_3893#1      ------------------------------------------------------------
                                                                                  

consensus_3893#0      TTCACAAGGAAGCAATCTCAAATTCTCTCAGTATTATAGTATAACTAATGCTGTATGTAC 180
consensus_3893#1      ------------------------------------------------------------
                                                                                  

consensus_3893#0      TGTGGTGAGGAGTGCATCCGGCAAACCCATTCAGCGCTTCAAGGAAGAGAACCACAGAGG 240
consensus_3893#1      ------------------------------------------------------------
                                                                                  

consensus_3893#0      ATTCCACTCTTCAGGGTTCCAAGCTCCAACTATCAGGAGGGGCCAAAAGGCCAAGCAATA 300
consensus_3893#1      -------GTCTTGTAGTTCCGTGCACTATCAGACCAGCTATATCGATCACCCGATTATCA 53
                                *    *****  ** * * *   *  *      * *    ** *  *  *

consensus_3893#0      AAATCCATGTCCAAAGCAAAGCTCCCGCGTGGTTACTAAAACAATAACCAGTGCTTCTTC 360
consensus_3893#1      CAAGC-ATGTTCGAAAGGAAATAGTGAAGCAGGTAC--AGCAGATCACCTTCTGGAATTA 110
                       ** * **** * **   **        *  * ***  *    ** ***        ** 

consensus_3893#0      CTAGGCTTGTATTTGCTAGGGAGATCTCGAGCATCATATAGCGAGTTATAGTGAACTTCC 420
consensus_3893#1      CCGGTCTTTAGTTTATATTACTGTGCTCATATGTT-TAAACTGCAATATCTTTATCAGAT 169
                      *  * ***   ***        *  ***     *  ** *  *   ***  * * *    

consensus_3893#0      GACCAGAAACTTAGCCAAATTTCTCTCTGTGGTGCCTGATACTGTGGAACAATTTCAACA 480
consensus_3893#1      G--CCGTAACACAATGAATCTGTCATTCTCTGCTCTAGTTATTGCATTTTTTTTTCTCCA 227
                      *  * * ***  *   **  *    *     *  *  * ** **        ****  **

consensus_3893#0      AAACATGTGTCTCTGAATGATGTTAGAA-GGCATATTTTTGCAGCAAACTTATCAGCAGC 539
consensus_3893#1      GGTGATGAATGAAGAAACAAAATTTCATCAATATATTGTAGTTATATGCTGATAAACTCC 287
                          ***  *     **  *  **  *     ***** * *    *  ** ** * *  *

consensus_3893#0      AGCTTGCAATGTGACATGGTCGCCCCATTCACCAGATTTTTTCATCTTCTTGCAATAATG 599
consensus_3893#1      TGTTAGAGAT---ACATG-CATTCTTACCCATGCTGTTTTTCTACTTGTCTAGCTCAAGG 343
                       * * *  **   *****     *  *  **     *****  *  *   *     ** *

consensus_3893#0      TTTATATTTCATTGGAACATAACCTTCATACAAAGAGTTACATGCCTTGAGCTGCTTCAC 659
consensus_3893#1      CATGTAACTCTTTGTATGAAGNTNNNGTTNNNNNGAAATATNNACATT--ATTGCANNNN 401
                        * **  ** *** *  *         *     **  **    * **    ***     

consensus_3893#0      TATTTCCTTTCGAACATGCTTGTGATAATCGGGTGATCGATATAGCTGGTCTGATAGTGC 719
consensus_3893#1      NNNNAAAAAGNNNNNACTTCTG-------------------------------------- 423
                                     *    **                                      

consensus_3893#0      ACGGAACTGACAATTGCCATCGCCAGAAACTCTCACTTCATACAAGCCATA 770
consensus_3893#1      ---------------------------------------------------
                                                                         




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)