These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3918#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 850 fasta sequence [TTCGAGATCGATCAGCTCCAGCTCGTGGAGTGTGCGTAGCTTGATTGCACTTGCGCAGCGAGGTTAATCAGCTGCAACGGCGGCGAGGTCGTCGTCGCGGAGGAGAGGACGGCGTCTGTTTCGGTGGTTGGTGCTTCCGCCATGCTGCAGGGGGAGGAGAAGAAGGCCGGGAAGGTGAAGAAAGGGTGGCTGGCGGTGAGGGTCGGGGTGGAGGGCGCCGACGGCGGCGACGGCGGCGGGTTCCGGCGGTTCGTCATCCCGATCGCCTACCTCTACCACCCCTTGTTCCGCCGCCTGCTTGAGGCGGCGCGCGACGCCTACGGCTACGACTCGGCCGGCCCGCTCCGGCTCCCCTGCTCCGTCGACGAGTTCCTCCGCCTCCGCTCGCTCGTGGAGCGGGAGACCCACGCGGCCGGCGGCGGCGGCGGCGGCTCGTCGTCGCCGCACCGCGTCCACGCCGGCGGCGGATCGCACCACCACCACCACTACTCCTTCTCCCCGTGCACCCGCGCCAAAGTCAGCTCCTGATCGATCGAGCTCGCTTCCGTGCGCCATGGCGGAGTCGATCTGCCGGCGAGGACGCCCCGCGTACGTGTACAGTAGCGATTAGCTATAGCTAGCAGAGACAGTACACGACGAGAGGAGAGTGGAGTGGCATACAGTAGCTAGGTGATTAGTGATTTGCTCCGGGTTTTCGATCTCATGATTTTGGTCTCTTGATTTCCCCTTCTTCTTCTTGATCTTTTTGATCGATCTTGTATAGACGCATGTATGATAGGATTGACAGGTCGACTTATGTATGTATAATTATCAGTTGAACTCACAGTTCATAGCTATTATATTCTCTTCA] [+] EMBL AK107987 [TTCGAGATCGATCAGCTCCAGCTCGTGGAGTGTGCGTAGCTTGATTGCACTTGCGCAGCGAGGTTAATCAGCTGCAACGGCGGCGAGGTCGTCGTCGCGGAGGAGAGGACGGCGTCTGTTTCGGTGGTTGGTGCTTCCGCCATGCTGCAGGGGGAGGAGAAGAAGGCCGGGAAGGTGAAGAAAGGGTGGCTGGCGGTGAGGGTCGGGGTGGAGGGCGCCGACGGCGGCGACGGCGGCGGGTTCCGGCGGTTCGTCATCCCGATCGCCTACCTCTACCACCCCTTGTTCCGCCGCCTGCTTGAGGCGGCGCGCGACGCCTACGGCTACGACTCGGCCGGCCCGCTCCGGCTCCCCTGCTCCGTCGACGAGTTCCTCCGCCTCCGCTCGCTCGTGGAGCGGGAGACCCACGCGGCCGGCGGCGGCGGCGGCGGCTCGTCGTCGCCGCACCGCGTCCACGCCGGCGGCGGATCGCACCACCACCACCACTACTCCTTCTCCCCGTGCACCCGCGCCAAAGTCAGCTCCTGATCGATCGAGCTCGCTTCCGTGCGCCATGGCGGAGTCGATCTGCCGGCGAGGACGCCCCGCGTACGTGTACAGTAGCGATTAGCTATAGCTAGCAGAGACAGTACACGACGAGAGGAGAGTGGAGTGGCATACAGTAGCTAGGTGATTAGTGATTTGCTCCGGGTTTTCGATCTCATGATTTTGGTCTCTTGATTTCCCCTTCTTCTTCTTGATCTTTTTGATCGATCTTGTATAGACGCATGTATGATAGGATTGACAGGTCGACTTATGTATGTATAATTATCAGTTGAACTCACAGTTCATAGCTATTATATTCTCTTCA] [-] EMBL CB668237 [ CCGGGAAGGTGAAGAAAGGGTGGCTGGCGGTGAGGGTCGGGGTGGAGGGCGCCGACGGCGGCGACGGCGGCGGGTTCCGGCGGTTCGTCATCCCGATCGCCTACCTCTACCACCCCTTGTTCCGCCGCCTGCTTGAGGCGGCGCGCGACGCCTACGGCTACGACTCGGCCGGCCCGCTCCGGCTCCCCTGCTCCGTCGAAGAGTTCCTCCGCCTCCGCTCGCTCGTGGAGCGGGAGACCCACGCGGCCGGCGGCGGCGGCGGCGGCTCGTCGTCGCCGCACCGCGTCCACGCCGGCGGCGGATCGCACCACCACCACCACTACTCCTTCTCCCCGTGCACCCGCGCCAAAGTCAGCTCCTGATCGATCGAGCTCGCTTCCGTGCGCCATGGCGGAGTCGATCTGCCGGCGAGGACGCCCCGCGTACGTGTACAGTAGCGATTAGCTATAGCTAGCAGAGAC ] consensusID : consensus_3918#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 349 fasta sequence [AGCCCCTGGAGTGTGCGTAGCTTGATTGCACTTGCGCAGCGAGGTTAATCAGCTGCAACGGCGGCGAGGTCGTCGTCCCGGAGGAGAGGACGGCGTCTGTTTCGGTGGTTGGTGCTTCCGCCATGCTGCAGGGGGAGGAGAAGAAGGCCGGGAAGGTGAAGAAAGGGTGGCTGGCGGTGAGGGTCGGGGTGGAGGGCCGCGAACTGTCTCTGCTAGCTATATCTAAGCGCTACTGTACACGTACGCGGGGCGTCCTCGCCCGTAGATCCACTCCCCCATGGCGGACGGAAGCTAGCTCTATCGATCAGGAGCTGACTTTGGTGTGGGGGCACGGGGATAAGGAGTACTG] [+] EMBL CB668236 [AGCCCCTGGAGTGTGCGTAGCTTGATTGCACTTGCGCAGCGAGGTTAATCAGCTGCAACGGCGGCGAGGTCGTCGTCCCGGAGGAGAGGACGGCGTCTGTTTCGGTGGTTGGTGCTTCCGCCATGCTGCAGGGGGAGGAGAAGAAGGCCGGGAAGGTGAAGAAAGGGTGGCTGGCGGTGAGGGTCGGGGTGGAGGGCCGCGAACTGTCTCTGCTAGCTATATCTAAGCGCTACTGTACACGTACGCGGGGCGTCCTCGCCCGTAGATCCACTCCCCCATGGCGGACGGAAGCTAGCTCTATCGATCAGGAGCTGACTTTGGTGTGGGGGCACGGGGATAAGGAGTACTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3918#0 TTCGAGATCGATCAGCTCCAGCTCGTGGAGTGTGCGTAGCTTGATTGCACTTGCGCAGCG 60 consensus_3918#1 -------------------AGCCCCTGGAGTGTGCGTAGCTTGATTGCACTTGCGCAGCG 41 *** * *********************************** consensus_3918#0 AGGTTAATCAGCTGCAACGGCGGCGAGGTCGTCGTCGCGGAGGAGAGGACGGCGTCTGTT 120 consensus_3918#1 AGGTTAATCAGCTGCAACGGCGGCGAGGTCGTCGTCCCGGAGGAGAGGACGGCGTCTGTT 101 ************************************ *********************** consensus_3918#0 TCGGTGGTTGGTGCTTCCGCCATGCTGCAGGGGGAGGAGAAGAAGGCCGGGAAGGTGAAG 180 consensus_3918#1 TCGGTGGTTGGTGCTTCCGCCATGCTGCAGGGGGAGGAGAAGAAGGCCGGGAAGGTGAAG 161 ************************************************************ consensus_3918#0 AAAGGGTGGCTGGCGGTGAGGGTCGGGGTGGAGGGCGCCGACGGCGGCGACGGCGGCGGG 240 consensus_3918#1 AAAGGGTGGCTGGCGGTGAGGGTCGGGGTGGAGGGCCGCGA-ACTGTCTCTGCTAGCTAT 220 ************************************ *** * * * ** consensus_3918#0 TTCCGGCGGTTCGTCATCCCGATCGCCTACCTCTACCACCCCTTGTTCCGCCGCCTGCTT 300 consensus_3918#1 ATCTAAGCGCTACTGTACACGTACGCGGGGCGTCCTCGCCCGTAGATCCACTCCCCC--- 277 ** * * * * ** *** * * *** * * *** * ** consensus_3918#0 GAGGCGGCGCGCGACGCCTACGGCTACGACTCGGCCGGCCCGCTCCGGCTCCCCTGCTCC 360 consensus_3918#1 ---ATGGCGGACGGAAGCTAGCTCTATCGATCAGG-AGCTGACTTTGGTGTGGGGGCAC- 332 **** ** *** *** ** * ** ** ** ** * consensus_3918#0 GTCGACGAGTTCCTCCGCCTCCGCTCGCTCGTGGAGCGGGAGACCCACGCGGCCGGCGGC 420 consensus_3918#1 GGGGATAAGGAGTACTG------------------------------------------- 349 * ** ** * * consensus_3918#0 GGCGGCGGCGGCTCGTCGTCGCCGCACCGCGTCCACGCCGGCGGCGGATCGCACCACCAC 480 consensus_3918#1 ------------------------------------------------------------ consensus_3918#0 CACCACTACTCCTTCTCCCCGTGCACCCGCGCCAAAGTCAGCTCCTGATCGATCGAGCTC 540 consensus_3918#1 ------------------------------------------------------------ consensus_3918#0 GCTTCCGTGCGCCATGGCGGAGTCGATCTGCCGGCGAGGACGCCCCGCGTACGTGTACAG 600 consensus_3918#1 ------------------------------------------------------------ consensus_3918#0 TAGCGATTAGCTATAGCTAGCAGAGACAGTACACGACGAGAGGAGAGTGGAGTGGCATAC 660 consensus_3918#1 ------------------------------------------------------------ consensus_3918#0 AGTAGCTAGGTGATTAGTGATTTGCTCCGGGTTTTCGATCTCATGATTTTGGTCTCTTGA 720 consensus_3918#1 ------------------------------------------------------------ consensus_3918#0 TTTCCCCTTCTTCTTCTTGATCTTTTTGATCGATCTTGTATAGACGCATGTATGATAGGA 780 consensus_3918#1 ------------------------------------------------------------ consensus_3918#0 TTGACAGGTCGACTTATGTATGTATAATTATCAGTTGAACTCACAGTTCATAGCTATTAT 840 consensus_3918#1 ------------------------------------------------------------ consensus_3918#0 ATTCTCTTCA 850 consensus_3918#1 ---------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||