These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3920#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1199 fasta sequence [AGCACCAACCCCAAATCCCCTCTCCCCCCCAATCCTCAAAGATGCCGTCCTCCTCCTCCTACTCCTCCTCCGTTAGCAACCCTGGTCCCGAGCTACCTAGGTCAGCGCGCCAAGAACCATGCTCTTGTCTCCTCCAGCTCCACCGCCGCTGAAGCCGCCCGTCCGCCTGAATCGACTCCCGCAGCGGCAGCCGGGAGGCGGCGGCCGGTTCTTGCTGCCCCGGAGGAGGCCAAGAACGCCGCGGTCCTTTGGCGTGGTGGTGTGCATGGCGGAGATGGCCAGGGTTGGGACCGGGTCCTCGTGGGAGGAGGAGTTGGGCGTCCCGGAGGAGAGCGACGCGATCCTGGGAGGCGGAGGCGGGGACGGGCAAAGGCGGCAGGCGACCAGGTGGGAGCTCGTCGAGGCGAGACTGAACCAGACGAGTAAATGGCTGGTCGCGGGTTGTTATACTTCTGCAGCCATTTGGAAGCATGATGCTCTTATTATGTGGGCTATGATTGGTGCTGTTCTAAACTCTATGTTTTCAAATCTTCTTAAACGGATATTCAACCATGAAAGGCCTGTGTCTGCTTTGCGGTCTGATCCTGGAATGCCTTCATCCCACGCGCAATCTTTTCTCTATTCTGCGGTGTTTCTAATTCTTTCATTGTTCTACTGGCTCGGGAGAACTTATCTGTCAGTTATTCTTGGGGTTGCAATTCTAGCAATGTGCTGCTATCTTTCGTGGTTACGAGTGTCGCAGCACCTCCATACACTGAACCAGGTTCTTGTGGGTGCTATAGTAGGATCAGCCTTTGGTGCTATGTGGTTTGCGCTTTTTAATTTGCTCGTGCAAGAGGCGTTTGCTTCTTCCGTACCGGTTCAGATTGCGGTGACTATCGGGACGGCAATATTATGCATCGGCTTTGTCATCCATGTCGTTCGCCACTGGTTCAAGGATGAGTGAATAGCAATATGAAATCGCAATGACCAATAGGTGATTGATTGAGACACAAAATCAACTGGTAACGGAAGGCTCTGTATACTCTATGGGAAGATCATACTGGAATTATTTGGGAGTGGGTTCGCAAGATAGTCACAGATAGCAACCTCAGTTCATTTTTTGGCATTTTTGCTGCAGGATAGTCACAGCACTGATTCTTGTAATACAGAACAGTTTATGCTTGAAATTTCTTCCACGAAATGATAATGATGTCCTT] [+] EMBL AK061066 [AGCACCAACCCCAAATCCCCTCTCCCCCCCAATCCTCAAAGATGCCGTCCTCCTCCTCCTACTCCTCCTCCGTTAGCAACCCTGGTCCCGAGCTACCTAGGTCAGCGCGCCAAGAACCATGCTCTTGTCTCCTCCAGCTCCACCGCCGCTGAAGCCGCCCGTCCGCCTGAATCGACTCCCGCAGCGGCAGCCGGGAGGCGGCGGCCGGTTCTTGCTGCCCCGGAGGAGGCCAAGAACGCCGCGGTCCTTTGGCGTGGTGGTGTGCATGGCGGAGATGGCCAGGGTTGGGACCGGGTCCTCGTGGGAGGAGGAGTTGGGCGTCCCGGAGGAGAGCGACGCGATCCTGGGAGGCGGAGGCGGGGACGGGCAAAGGCGGCAGGCGACCAGGTGGGAGCTCGTCGAGGCGAGACTGAACCAGACGAGTAAATGGCTGGTCGCGGGTTGTTATACTTCTGCAGCCATTTGGAAGCATGATGCTCTTATTATGTGGGCTATGATTGGTGCTGTTCTAAACTCTATGTTTTCAAATCTTCTTAAACGGATATTCAACCATGAAAGGCCTGTGTCTGCTTTGCGGTCTGATCCTGGAATGCCTTCATCCCACGCGCAATCTTTTCTCTATTCTGCGGTGTTTCTAATTCTTTCATTGTTCTACTGGCTCGGGAGAACTTATCTGTCAGTTATTCTTGGGGTTGCAATTCTAGCAATGTGCTGCTATCTTTCGTGGTTACGAGTGTCGCAGCACCTCCATACACTGAACCAGGTTCTTGTGGGTGCTATAGTAGGATCAGCCTTTGGTGCTATGTGGTTTGCGCTTTTTAATTTGCTCGTGCAAGAGGCGTTTGCTTCTTCCGTACCGGTTCAGATTGCGGTGACTATCGGGACGGCAATATTATGCATCGGCTTTGTCATCCATGTCGTTCGCCACTGGTTCAAGGATGAGTGAATAGCAATATGAAATCGCAATGACCAATAGGTGATTGATTGAGACACAAAATCAACTGGTAACGGAAGGCTCTGTATACTCTATGGGAAGATCATACTGGAATTATTTGGGAGTGGGTTCGCAAGATAGTCACAGATAGCAACCTCAGTTCATTTTTTGGCATTTTTGCTGCAGGATAGTCACAGCACTGATTCTTGTAATACAGAACAGTTTATGCTTGAAAT ] [+] EMBL AK059507 [ TCTCCCCCCCAATCCTCAAAGATGCCGTCCTCCTCCTCCTACTCCTCCTCCGTTAGCAACCCTGGTCCCGAGCTACCTAGGTCAGCGCGCCAAGAACCATGCTCTTGTCTCCTCCAGCTCCACCGCCGCTGAAGCCGCCCGTCCGCCTGAATCGACTCCCGCAGCGGCAGCCGGGAGGCGGCGGCCGGTTCTTGCTGCCCCGGAGGAGGCCAAGAACGCCGCGGTCCTTTGGCGTGGTGGTGTGCATGGCGGAGATGGCCAGGGTTGGGACCGGGTCCTCGTGGGAGGAGGAGTTGGGCGTCCCGGAGGAGAGCGACGCGATCCTGGGAGGCGGAGGCGGGGACGGGCAAAGGCGGCAGGCGACCAGGTGGGAGCTCGTCGAGGCGAGACTGAACCAGACGAGTAAATGGCTGGTCGCGGGTTGTTATACTTCTGCAGCCATTTGGAAGCATGATGCTCTTATTATGTGGGCTATGATTGGTGCTGTTCTAAACTCTATGTTTTCAAATCTTCTTAAACGGATATTCAACCATGAAAGGCCTGTGTCTGCTTTGCGGTCTGATCCTGGAATGCCTTCATCCCACGCGCAATCTTTTCTCTATTCTGCGGTGTTTCTAATTCTTTCATTGTTCTACTGGCTCGGGAGAACTTATCTGTCAGTTATTCTTGGGGTTGCAATTCTAGCAATGTGCTGCTATCTTTCGTGGTTACGAGTGTCGCAGCACCTCCATACACTGAACCAGGTTCTTGTGGGTGCTATAGTAGGATCAGCCTTTGGTGCTATGTGGTTTGCGCTTTTTAATTTGCTCGTGCAAGAGGCGTTTGCTTCTTCCGTACCGGTTCAGATTGCGGTGACTATCGGGACGGCAATATTATGCATCGGCTTTGTCATCCATGTCGTTCGCCACTGGTTCAAGGATGAGTGAATAGCAATATGAAATCGCAATGACCAATAGGTGATTGATTGAGACACAAAATCAACTGGTAACGGAAGGCTCTGTATACTCTATGGGAAGATCATACTGGAATTATTTGGGAGTGGGTTCGCAAGATAGTCACAGATAGCAACCTCAGTTCATTTTTTGGCATTTTTGCTGCAGGATAGTCACAGCACTGATTCTTGTAATACAGAACAGTTTATGCTTGAAATTTCTTCCACGAAATGATAATGATGTCCTT] consensusID : consensus_3920#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 551 fasta sequence [TCTTTTAGTTTGATTTGCGATTTCCAAGTTCTTCAGTGCATTCTAATCATAATTCTACTTATGTGCACGTCGTGGTTACGAGTGTCGCAGCGCCTCCATACACTGAACCANGGTTCTTGTGGGTGCTATAGTAGGATCAGCCTTTGGTGCTATGTGGTTTGCGCTTTTTAATTTGCTCGTGCNAGAGGCGTTTGCTTCTTCCGTACCGGTTCAGATTGCGGTGACTATCGGGACGGCAATATTATGCATCGGCTTTGTCATCCATGTCGTTCGCCACCTGGTTCAAGGATGAGTGACTAGCNATATGAAATCGCAATGACCCATAGGTGATTGATTGAGACACAAAATCACTGGTAACGGAAGGCTCTGTATACTCTATGGGAAGATCATACTGGAATTATTTGGGAGTGGGTTCGCAAGATAGTCACAGATAGCAACCTCAGTTCATTTTTTGGCATTTTTGCTGCAGGATAGTCACAGCCTGATTCTTGTAATACAGAACGTTTATGCTTGAAATTTCTTCCANCGAAATGATAATGATGTCAAAAAAA] [+] EMBL BM418543 [TCTTTTAGTTTGATTTGCGATTTCCAAGTTCTTCAGTGCATTCTAATCATAATTCTACTTATGTGCACGTCGTGGTTACGAGTGTCGCAGCGCCTCCATACACTGAACCANGGTTCTTGTGGGTGCTATAGTAGGATCAGCCTTTGGTGCTATGTGGTTTGCGCTTTTTAATTTGCTCGTGCNAGAGGCGTTTGCTTCTTCCGTACCGGTTCAGATTGCGGTGACTATCGGGACGGCAATATTATGCATCGGCTTTGTCATCCATGTCGTTCGCCACCTGGTTCAAGGATGAGTGACTAGCNATATGAAATCGCAATGACCCATAGGTGATTGATTGAGACACAAAATCACTGGTAACGGAAGGCTCTGTATACTCTATGGGAAGATCATACTGGAATTATTTGGGAGTGGGTTCGCAAGATAGTCACAGATAGCAACCTCAGTTCATTTTTTGGCATTTTTGCTGCAGGATAGTCACAGCCTGATTCTTGTAATACAGAACGTTTATGCTTGAAATTTCTTCCANCGAAATGATAATGATGTCAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3920#0 AGCACCAACCCCAAATCCCCTCTCCCCCCCAATCCTCAAAGATGCCGTCCTCCTCCTCCT 60 consensus_3920#1 ------------------------------------------------------------ consensus_3920#0 ACTCCTCCTCCGTTAGCAACCCTGGTCCCGAGCTACCTAGGTCAGCGCGCCAAGAACCAT 120 consensus_3920#1 ------------------------------------------------------------ consensus_3920#0 GCTCTTGTCTCCTCCAGCTCCACCGCCGCTGAAGCCGCCCGTCCGCCTGAATCGACTCCC 180 consensus_3920#1 ------------------------------------------------------------ consensus_3920#0 GCAGCGGCAGCCGGGAGGCGGCGGCCGGTTCTTGCTGCCCCGGAGGAGGCCAAGAACGCC 240 consensus_3920#1 ------------------------------------------------------------ consensus_3920#0 GCGGTCCTTTGGCGTGGTGGTGTGCATGGCGGAGATGGCCAGGGTTGGGACCGGGTCCTC 300 consensus_3920#1 ------------------------------------------------------------ consensus_3920#0 GTGGGAGGAGGAGTTGGGCGTCCCGGAGGAGAGCGACGCGATCCTGGGAGGCGGAGGCGG 360 consensus_3920#1 ------------------------------------------------------------ consensus_3920#0 GGACGGGCAAAGGCGGCAGGCGACCAGGTGGGAGCTCGTCGAGGCGAGACTGAACCAGAC 420 consensus_3920#1 ------------------------------------------------------------ consensus_3920#0 GAGTAAATGGCTGGTCGCGGGTTGTTATACTTCTGCAGCCATTTGGAAGCATGATGCTCT 480 consensus_3920#1 ------------------------------------------------------------ consensus_3920#0 TATTATGTGGGCTATGATTGGTGCTGTTCTAAACTCTATGTTTTCAAATCTTCTTAAACG 540 consensus_3920#1 ------------------------------------------------------------ consensus_3920#0 GATATTCAACCATGAAAGGCCTGTGTCTGCTTTGCGGTCTGATCCTGGAATGCCTTCATC 600 consensus_3920#1 ------------------------------------------------------------ consensus_3920#0 CCACGCGCAATCTTTTCTCTATTCTGCGGTGTTTCTAATTCTTTCATTGTTCTACTGGCT 660 consensus_3920#1 --------------------------------------------------TCTTTTAGTT 10 *** * * * consensus_3920#0 CGGGAGAACTTATCTGTCAGTTATTCTTGGGGTTGCAATTCTAGCAATGTGCTGCTATCT 720 consensus_3920#1 TG--ATTTGCGATTTCCAAGTTCTTCAGTGCATTCTAATCATAATTCTACTTATGTGCAC 68 * * ** * **** *** * ** *** ** * * consensus_3920#0 TTCGTGGTTACGAGTGTCGCAGCACCTCCATACACTGAACCAGG-TTCTTGTGGGTGCTA 779 consensus_3920#1 GTCGTGGTTACGAGTGTCGCAGCGCCTCCATACACTGAACCANGGTTCTTGTGGGTGCTA 128 ********************** ****************** * *************** consensus_3920#0 TAGTAGGATCAGCCTTTGGTGCTATGTGGTTTGCGCTTTTTAATTTGCTCGTGCAAGAGG 839 consensus_3920#1 TAGTAGGATCAGCCTTTGGTGCTATGTGGTTTGCGCTTTTTAATTTGCTCGTGCNAGAGG 188 ****************************************************** ***** consensus_3920#0 CGTTTGCTTCTTCCGTACCGGTTCAGATTGCGGTGACTATCGGGACGGCAATATTATGCA 899 consensus_3920#1 CGTTTGCTTCTTCCGTACCGGTTCAGATTGCGGTGACTATCGGGACGGCAATATTATGCA 248 ************************************************************ consensus_3920#0 TCGGCTTTGTCATCCATGTCGTTCGCCAC-TGGTTCAAGGATGAGTGAATAGCAATATGA 958 consensus_3920#1 TCGGCTTTGTCATCCATGTCGTTCGCCACCTGGTTCAAGGATGAGTGACTAGCNATATGA 308 ***************************** ****************** **** ****** consensus_3920#0 AATCGCAATGACCAATAGGTGATTGATTGAGACACAAAATCAACTGGTAACGGAAGGCTC 1018 consensus_3920#1 AATCGCAATGACCCATAGGTGATTGATTGAGACACAAAATCA-CTGGTAACGGAAGGCTC 367 ************* **************************** ***************** consensus_3920#0 TGTATACTCTATGGGAAGATCATACTGGAATTATTTGGGAGTGGGTTCGCAAGATAGTCA 1078 consensus_3920#1 TGTATACTCTATGGGAAGATCATACTGGAATTATTTGGGAGTGGGTTCGCAAGATAGTCA 427 ************************************************************ consensus_3920#0 CAGATAGCAACCTCAGTTCATTTTTTGGCATTTTTGCTGCAGGATAGTCACAGCACTGAT 1138 consensus_3920#1 CAGATAGCAACCTCAGTTCATTTTTTGGCATTTTTGCTGCAGGATAGTCACAGC-CTGAT 486 ****************************************************** ***** consensus_3920#0 TCTTGTAATACAGAACAGTTTATGCTTGAAATTTCTTCCAC-GAAATGATAATGATGTCC 1197 consensus_3920#1 TCTTGTAATACAGAAC-GTTTATGCTTGAAATTTCTTCCANCGAAATGATAATGATGTCA 545 **************** *********************** ***************** consensus_3920#0 TT---- 1199 consensus_3920#1 AAAAAA 551 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||