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Oryza sativa
cluster # 3921 cluster # 3921       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3921#0 length = 1405 sequences # 3  

consensusID : consensus_3921#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1405
fasta sequence
                              [CAGCAGCTCAGTGGCGGCGTCGGCGTCGGCGGCGCCGCGGCGGCGGCGAGCTCGAATGATCGGCCGCCGTTGTGCGTCCAGGGTGACTCCGGCCTCGTCCTCACCACCGACCCCAAGCCACGCCTCCGCTGGACCGTCGAGCTCCATGACCGCTTCGTCGACGCCGTCACCCAGCTCGGAGGCCCGGACAAGGCGACTCCAAAGACGATCATGAGGGTTATGGGAGTCAAGGGACTCACACTTTACCATCTCAAGAGCCATCTTCAGAAATTCAGACTTGGGAAGCAGCACAAGGATTTCAACGACCACTCGGTTAAGGATGCAATGGACATGCAACGGAATGCAGCGTCTTCTTCGGGCATCATGGGAAGAAGCATGAATGACCGCAGCGTGCATGTGAATGAGGCACTAAGGATGAAGATGGAAGTTCAGAGAAGATTCCATGAACAATTAGAGGTGCAAAAGCACCTTCAGATGAGGGTTGAGGCCCAGGGGAAATACATGCAGACCATCCTGGAGAAAGCATACCAAGCCATCTCGTCCTCAGGAGATTGCGCCACGTGGCACGCAGGATACAAATCTCTAGGCAGCCAAGCTGTCCTTGACATTGGCAGCTCCATGAGCTTCCCTTCTCTGCAAGATGATCTGCAGTTATATGGAGGAAGCCATCTAGATCACCTGCATCAGCAGCATGAGCAGATGGAGATCAGGCCATCAATTGATACCTTCTTGGCATTCAATTACAGCTCCAGTACTGGGAAGAGCCCAATGGTGTGGCCCGGCGCCGACGACGGCGGCGGCGAGCCGGCGAAGATCTCCGGCGATCATCAGCTCCAGATGGCGGCGCCGGCGACGACGACGATGATGATGGAGGCCATCACCATGTCAGGAGGAGACTCCATGGGCAGTAAGGGGTTTGAGGGTCAGATGAGCTCTAAGCTTGACATGAGATCACCACTTCCACAGCAAACAGTGCTACCTGTAGGAAGTGAGAGGATGAGTAGTCCAATTGTTGGAGCCAAGGCTAGGAACATCTCCTATGGGTAAACTAATTGATGATGAATTGAAGAGGTAATTATATTAACTGCATGTTTAATTTTGTGGTGAAACCAGCAAGCAGGCTGAACTGATCTTGCAAGATCACTGAATAAGCATATGTAACTGTCTTGTTATTAGTTGGGAGAGTATACAAAAGTAGTATTGCATTATGCATCGTTCAATTAATTAGGATGCATCCATGCATGCAATTAATTAAGTTCTTGAGAGAGGAGGGTGATCTAGATAATTAGTCGTGCCTACATTCTTAATTTTGGCTTAAAGTTTGTAAATTTTAATTTTGTGTTGTCTTAATTCATCCATGCTTGTCTGAACATTAACGAAAGTTTTCTTATATATATGTATTTGG]

[+] EMBL AK119588             [CAGCAGCTCAGTGGCGGCGTCGGCGTCGGCGGCGCCGCGGCGGCGGCGAGCTCGAATGATCGGCCGCCGTTGTGCGTCCAGGGTGACTCCGGCCTCGTCCTCACCACCGACCCCAAGCCACGCCTCCGCTGGACCGTCGAGCTCCATGACCGCTTCGTCGACGCCGTCACCCAGCTCGGAGGCCCGGACAAGGCGACTCCAAAGACGATCATGAGGGTTATGGGAGTCAAGGGACTCACACTTTACCATCTCAAGAGCCATCTTCAGAAATTCAGACTTGGGAAGCAGCACAAGGATTTCAACGACCACTCGGTTAAGGATGCAATGGACATGCAACGGAATGCAGCGTCTTCTTCGGGCATCATGGGAAGAAGCATGAATGACCGCAGCGTGCATGTGAATGAGGCACTAAGGATGAAGATGGAAGTTCAGAGAAGATTCCATGAACAATTAGAGGTGCAAAAGCACCTTCAGATGAGGGTTGAGGCCCAGGGGAAATACATGCAGACCATCCTGGAGAAAGCATACCAAGCCATCTCGTCCTCAGGAGATTGCGCCACGTGGCACGCAGGATACAAATCTCTAGGCAGCCAAGCTGTCCTTGACATTGGCAGCTCCATGAGCTTCCCTTCTCTGCAAGATGATCTGCAGTTATATGGAGGAAGCCATCTAGATCACCTGCATCAGCAGCATGAGCAGATGGAGATCAGGCCATCAATTGATACCTTCTTGGCATTCAATTACAGCTCCAGTACTGGGAAGAGCCCAATGGTGTGGCCCGGCGCCGACGACGGCGGCGGCGAGCCGGCGAAGATCTCCGGCGATCATCAGCTCCAGATGGCGGCGCCGGCGACGACGACGATGATGATGGAGGCCATCACCATGTCAGGAGGAGACTCCATGGGCAGTAAGGGGTTTGAGGGTCAGATGAGCTCTAAGCTTGACATGAGATCACCACTTCCACAGCAAACAGTGCTACCTGTAGGAAGTGAGAGGATGAGTAGTCCAATTGTTGGAGCCAAGGCTAGGAACATCTCCTATGGGTAAACTAATTGATGATGAATTGAAGAGGTAATTATATTAACTGCATGTTTAATTTTGTGGTGAAACCAGCAAGCAGGCTGAACTGATCTTGCAAGATCACTGAATAAGCATATGTAACTGTCTTGTTATTAGTTGGGAGAGTATACAAAAGTAGTATTGCATTATGCATCGTTCAATTAATTAGGATGCATCCATGCATGCAATTAATTAAGTTCTTGAGAGAGGAGGGTGATCTAGATAATTAGTCGTGCCTACATTCTTAATTTTGGCTTAAAGTTTGTAAATTTTAATTTTGTGTTGTCTTAATTCATCCATGCTTGTCTGAACATTAACGAAAGTTTTCTTATATATATGTATTTG ]
[+] EMBL CB656056             [                                                                                                              CCCCAACCCACGCCTCCGCTGGACCGTCGAGCTCCATGACCGCTTCGTCGACGCCGTCACCCAGCTCGGAGGCCCGGACAAGGCGACTCCAAAGACGATCATGAGGGTTATGGGAGTCAAGGGACTCACACTTTACCATCTCAAGAGCCATCTTCAGAAATTCAGACTTGGGAAGCAGCACAAGGATTTCAACGACCACTCGGTTAAGGATGCAATGGACATGCAACGGAATGCAGCGTCTTCTTCGGGCATCATGGGAAGAAGCATGAATGACCGCAGCGTGCATGTGAATGAGGCACTAAGGATGAAGATGGAAGTTCAGAGAAGATTCCATGAACAATTAGAGGTGCAAAAGCACCTTCAGATGAGGGTTGAGGCCCAGGGGAAATACATGCAGACCATCCTGGAGAAAGCATACCAAGCCATCTCGTCCTCAGGAGATTGCGCCACGTGGCACGCAGGATACAAATCTCTAGGCAGCCAAGCTGTCCTTGACATTGGCAGCTCCATGAGCTTCCCTTCTCTGCAAGATGATCTGCAGTTATATGGAGGAAGCCATCTAGATCACCTGCATCAGCAGCATGAGCAGATGGAGATCAGGCCATCAATTGATACCTTCTTGGCATTCAATTACAGCTCCAGTACTGGGAAGAGCCCAATGGTGTGGCCCGGCGCCGACGACGGCGGCGGCGAGCCGGCGAAGATCTCCGGCGATCATCAGCTCCAGATGGCGGCGCCGGCGACGACGACGATGATGATGGAGGCCATCACCATGTCAGGAGGAGACTCAATGGGCAGTAAGGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL CB656057             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ATGAGCAGATGGAGATCAGGCCATCAATTGATACCTTCTTGGCATTCAATTACAGCTCCAGTACTGGGAAGAGCCCAATGGTGTGGCCCGGCGCCGACGACGGCGGCGGCGAGCCGGCGAAGATCTCCGGCGATCATCAGCTCCAGATGGCGGCGCCGGCGACGACGACGATGATGATGGAGGCCATCACCATGTCAGGAGGAGACTCCATGGGCAGTAAGGGGTTTGAGGGTCAGATGAGCTCTAAGCTTGACATGAGATCACCACCTCCACAGCAAACAGTGCTACCTGTAGGAAGTGAGAGGATGAGTAGTCCAATTGTTGGAGCCAAGGCTAGGAACATCTCCTATGGGTAAACTAATTGATGATGAATTGAAGAGGTAATTATATTAACTGCATGTTTAATTTTGTGGTGAAACCAGCAAGCAGGCTGAACTGATCTTGCAAGATCACTGAATAAGCATATGTAACTGTCTTGTTATTAGTTGGGAGAGTATACAAAAGTAGTATTGCATTATGCATCGTTCAATTAATTAGGATGCATCCATGCATGCAATTAATTAAGTTCTTGAGAGAGGAGGGTGATCTAGATAATTAGTCGTGCCTACATTCTTAATTTTGGCTTAAAGTTTGTAAATTTTAATTTTGTGTTGTCTTAATTCATCCATGCTTGTCTGAACATTAACGAAAATAGTCTTATATATATGTATTTGG]


>consensus_3921#0 CAGCAGCTCAGTGGCGGCGTCGGCGTCGGCGGCGCCGCGGCGGCGGCGAGCTCGAATGAT CGGCCGCCGTTGTGCGTCCAGGGTGACTCCGGCCTCGTCCTCACCACCGACCCCAAGCCA CGCCTCCGCTGGACCGTCGAGCTCCATGACCGCTTCGTCGACGCCGTCACCCAGCTCGGA GGCCCGGACAAGGCGACTCCAAAGACGATCATGAGGGTTATGGGAGTCAAGGGACTCACA CTTTACCATCTCAAGAGCCATCTTCAGAAATTCAGACTTGGGAAGCAGCACAAGGATTTC AACGACCACTCGGTTAAGGATGCAATGGACATGCAACGGAATGCAGCGTCTTCTTCGGGC ATCATGGGAAGAAGCATGAATGACCGCAGCGTGCATGTGAATGAGGCACTAAGGATGAAG ATGGAAGTTCAGAGAAGATTCCATGAACAATTAGAGGTGCAAAAGCACCTTCAGATGAGG GTTGAGGCCCAGGGGAAATACATGCAGACCATCCTGGAGAAAGCATACCAAGCCATCTCG TCCTCAGGAGATTGCGCCACGTGGCACGCAGGATACAAATCTCTAGGCAGCCAAGCTGTC CTTGACATTGGCAGCTCCATGAGCTTCCCTTCTCTGCAAGATGATCTGCAGTTATATGGA GGAAGCCATCTAGATCACCTGCATCAGCAGCATGAGCAGATGGAGATCAGGCCATCAATT GATACCTTCTTGGCATTCAATTACAGCTCCAGTACTGGGAAGAGCCCAATGGTGTGGCCC GGCGCCGACGACGGCGGCGGCGAGCCGGCGAAGATCTCCGGCGATCATCAGCTCCAGATG GCGGCGCCGGCGACGACGACGATGATGATGGAGGCCATCACCATGTCAGGAGGAGACTCC ATGGGCAGTAAGGGGTTTGAGGGTCAGATGAGCTCTAAGCTTGACATGAGATCACCACTT CCACAGCAAACAGTGCTACCTGTAGGAAGTGAGAGGATGAGTAGTCCAATTGTTGGAGCC AAGGCTAGGAACATCTCCTATGGGTAAACTAATTGATGATGAATTGAAGAGGTAATTATA TTAACTGCATGTTTAATTTTGTGGTGAAACCAGCAAGCAGGCTGAACTGATCTTGCAAGA TCACTGAATAAGCATATGTAACTGTCTTGTTATTAGTTGGGAGAGTATACAAAAGTAGTA TTGCATTATGCATCGTTCAATTAATTAGGATGCATCCATGCATGCAATTAATTAAGTTCT TGAGAGAGGAGGGTGATCTAGATAATTAGTCGTGCCTACATTCTTAATTTTGGCTTAAAG TTTGTAAATTTTAATTTTGTGTTGTCTTAATTCATCCATGCTTGTCTGAACATTAACGAA AGTTTTCTTATATATATGTATTTGG



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)