These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3928#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1238 fasta sequence [TCGCCGGAGAAGAAGACATCGCCAACATATACCCCCCCTCCCTACCTAGACTCAGATCAGATCACCTGCCCATCGACGAGCACAAGAGCGATCCATTCCTGGTTTGAATCGAGCTTGGTTTGTTTGGTTGGTTGGTTTCTTGGAGTGGATGATGGCGAGGTGGTGCGTGGGGTGGCCGGCGGCGGCGAGGGGTGGTCGGGATGAGCTGACGTGGCAGGCGGAGCTGACGGCGCACGCGGCGGGGGAGTTCTCCATGGCGGCGGCGCAGGCCAACGCGGTGATGGAGGACCAGGCGCAGGTCATGGCGTCGCCCGGCGCCACGCTCGTCGGCGTCTATGATGGCCATGGCGGCCCCGACGCCTCCCGCTTCCTCCGCTCCCGCCTATTCCCTCTCATCCATGAGTTCGCGGCGGAGCGCGGCGGCGCGGTGGACGCCGACGTGATCCGGAAGGCGTTCCTGGCGGCCGACGAGGAGTACCTCCAGCTGCTGCGGTGGTCGCTGCCGAACATGTCCCGCGCGGCCGCCTCGGGCTCCTGCTGCCTCCTGGGCGCCATCTCCGGCGACACGCTCTACGTCGCCAACGCCGGCGACTCCCGCGCTGTCCTCGGCCGCCGCGCGGCGGCCGGCCAGACCGTCGCCGAGCGGCTCTCCACCGAGCACAACGTGGCCTCGGAGGAGGTCCGGAGGGAGCTCGCCGCGCTCCACCCCGACGACGGCGAGGTCGTGGTCCACGCCCGCGGCGCGTGGAGGGTGAAGGGGATCATCCAGGTGGCGCGCGCCATCGGCGACGTGTACCTCAAGACGCCGGAGTTCAAGCGCGACCCGGCGGTGCAGCGGTTATGCAGCGCCGCCGCCGCCGTCGAGCTGGCGCGGCCGGTGGTCACCGCCGAGCCGTCCATCCACGCCCGGAAGCTCAAGGCGGGCGTCGACCTGTTCGTCGTGTTCGCCTCCGACGGCCTATGGGAGCACCTCTCCGACGAGGCGGCGGTGCAGCTGGTGTCCAAGAGCTCGACGAGGAGAGGCGTGGCGGCGAGGCTGGTGCAGGCAGCGCTCGGGGAGGCGGCGAGGAAGCGGGAGGTGAGGCGCGGCGACCTGCGGCGGATCGAGCGAGGGGTGAGGCGCCACTTCCACGACGACATCACCGCCGTCGTCGTCTTCCTCGACCTCGACGACGACGGCGGCCGCCGCGCGCGCCGCCGTGGCAGGGTCGTCGACTCCAGCAGCAGCAGAAGCGGCA] [+] EMBL AK102668 [TCGCCGGAGAAGAAGACATCGCCAACATATACCCCCCCTCCCTACCTAGACTCAGATCAGATCACCTGCCCATCGACGAGCACAAGAGCGATCCATTCCTGGTTTGAATCGAGCTTGGTTTGTTTGGTTGGTTGGTTTCTTGGAGTGGATGATGGCGAGGTGGTGCGTGGGGTGGCCGGCGGCGGCGAGGGGTGGTCGGGATGAGCTGACGTGGCAGGCGGAGCTGACGGCGCACGCGGCGGGGGAGTTCTCCATGGCGGCGGCGCAGGCCAACGCGGTGATGGAGGACCAGGCGCAGGTCATGGCGTCGCCCGGCGCCACGCTCGTCGGCGTCTATGATGGCCATGGCGGCCCCGACGCCTCCCGCTTCCTCCGCTCCCGCCTATTCCCTCTCATCCATGAGTTCGCGGCGGAGCGCGGCGGCGCGGTGGACGCCGACGTGATCCGGAAGGCGTTCCTGGCGGCCGACGAGGAGTACCTCCAGCTGCTGCGGTGGTCGCTGCCGAACATGTCCCGCGCGGCCGCCTCGGGCTCCTGCTGCCTCCTGGGCGCCATCTCCGGCGACACGCTCTACGTCGCCAACGCCGGCGACTCCCGCGCTGTCCTCGGCCGCCGCGCGGCGGCCGGCCAGACCGTCGCCGAGCGGCTCTCCACCGAGCACAACGTGGCCTCGGAGGAGGTCCGGAGGGAGCTCGCCGCGCTCCACCCCGACGACGGCGAGGTCGTGGTCCACGCCCGCGGCGCGTGGAGGGTGAAGGGGATCATCCAGGTGGCGCGCGCCATCGGCGACGTGTACCTCAAGACGCCGGAGTTCAAGCGCGACCCGGCGGTGCAGCGGTTATGCAGCGCCGCCGCCGCCGTCGAGCTGGCGCGGCCGGTGGTCACCGCCGAGCCGTCCATCCACGCCCGGAAGCTCAAGGCGGGCGTCGACCTGTTCGTCGTGTTCGCCTCCGACGGCCTATGGGAGCACCTCTCCGACGAGGCGGCGGTGCAGCTGGTGTCCAAGAGCTCGACGAGGAGAGGCGTGGCGGCGAGGCTGGTGCAGGCAGCGCTCGGGGAGGCGGCGAGGAAGCGGGAGGTGAGGCGCGGCGACCTGCGGCGGATCGAGCGAGGGGTGAGGCGCCACTTCCACGACGACATCACCGCCGTCGTCGTCTTCCTCGACCTCGACGACGACGGCGGCCGCCGCGCGCGCCGCCGTGGCAGGG ] [-] EMBL CB668517 [ TGGCCTCGGAGGAGGTCAGGAGGGAGCTCGCCGCGCTCCACCCAGACGACGGCGAGGTCGTGGTCCACACCCGCGGCGCGTGGAGGATGAAGGGGATCATCCAGGTGGCGCGCGCCATCGGCGACGTGTACCTCAAGACGCCGGAGTTCAAGCGCGACCCGGCGGTGCAGCGGTTATGCAGCGCCGCCGCCGCCGTCGAGCTGGCGCGGCCGGTGGTCACCGCCGAGCCGTCCATCCACGCCCGGAAGCTCAAGGCGGGCGTCGACCTGTTCGTCGTGTTCGCCTCCGACGGCCTATGGGAGCACCTCTCCGACGAGGCGGCGGTGCAGCTGGTGTCCAAGAGCTCGACGAGGAGAGGCGTGGCGGCGAGGCTGGTGCAGGCAGCGCTCGGGGAGGCGGCGAGGAAGCGGGAGGTGAGGCGCGGCGACCTGCGGCGGATCGAGCGAGGGGTGAGGCGCCACTTCCACGACGACATCACCGCCGTCGTCGTCTTCCTCGACCTCGACGACGACGGCGGCCGCCGCGCGCGCCGCCGTGGCAGGGTCGTCGACTCCAGCAGCAGCAGAAGCGGCA] consensusID : consensus_3928#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 810 fasta sequence [CCTTTTTTTTTTTAAGATAAGACCGAGGAACACCGTGTTGGACTTATTGGCAACAAGTCCACAAAGTCAAAAGTCAAAGCTCATCCTCCCCATGCTGTTGCAGTCTTTGCCACATATATGAAGCCAAGCAGGTCAGTCACGGGCTTCACGTCGCCTCGCCGGAGAAGAAGACATCGCCAACATATACCCCCCCTCCCTACCTAGACTCAGATCAGATCACCTGCCCATCGACGAGCACAAGAGCGATCCATTCCTGGTTTGAATCGAGCTTGGTTTGTTTGGTTGGTTGGTTTCTTGGAGTGGATGATGGCGAGGTGGTGCGTGGGGTGGCCGGCGGCGGCGAGGGGTGGTCGGGATGAGCTGACGTGGCAGGCGGAGCTGACGGCGCACGCGGCGGGGGAGTTCTCCATGGCGGCGGCGCAGGCCAACGCGGTGATGGAGGACCAGGCGCAGGTCATGGCGTCGCCCGGCGCCACGCTCGTCGGCGTCTATGATGGCCATGGCGGCCCCGACGCCTCCCGCTTCCTCCGCTCCCGCCTATTCCCTCTCATCCATGGTGCGTGCGCTCGCCGGCGCGCGGCGGAGCTCGATCTTGTGGTTTGATTTGAATACGTTGGCAAGAATCTTTAGCTGATTTTGTTGGCGCCAAAAATTGATGAGCAGAGTTCGCGGCGGAGCGCGGCGGCGCGGTGGACGCCGACGTGATCCGGAAGGCGTTCCTGGCGGCCGACGAGGAGTACCTCCAGCTGCTGCGGTGGTCGCTGCCGAACATGTCCCGCGCGGCCGCCTCGGGCTCCTGCTGCCTCCTGG] [+] EMBL CB668518 [CCTTTTTTTTTTTAAGATAAGACCGAGGAACACCGTGTTGGACTTATTGGCAACAAGTCCACAAAGTCAAAAGTCAAAGCTCATCCTCCCCATGCTGTTGCAGTCTTTGCCACATATATGAAGCCAAGCAGGTCAGTCACGGGCTTCACGTCGCCTCGCCGGAGAAGAAGACATCGCCAACATATACCCCCCCTCCCTACCTAGACTCAGATCAGATCACCTGCCCATCGACGAGCACAAGAGCGATCCATTCCTGGTTTGAATCGAGCTTGGTTTGTTTGGTTGGTTGGTTTCTTGGAGTGGATGATGGCGAGGTGGTGCGTGGGGTGGCCGGCGGCGGCGAGGGGTGGTCGGGATGAGCTGACGTGGCAGGCGGAGCTGACGGCGCACGCGGCGGGGGAGTTCTCCATGGCGGCGGCGCAGGCCAACGCGGTGATGGAGGACCAGGCGCAGGTCATGGCGTCGCCCGGCGCCACGCTCGTCGGCGTCTATGATGGCCATGGCGGCCCCGACGCCTCCCGCTTCCTCCGCTCCCGCCTATTCCCTCTCATCCATGGTGCGTGCGCTCGCCGGCGCGCGGCGGAGCTCGATCTTGTGGTTTGATTTGAATACGTTGGCAAGAATCTTTAGCTGATTTTGTTGGCGCCAAAAATTGATGAGCAGAGTTCGCGGCGGAGCGCGGCGGCGCGGTGGACGCCGACGTGATCCGGAAGGCGTTCCTGGCGGCCGACGAGGAGTACCTCCAGCTGCTGCGGTGGTCGCTGCCGAACATGTCCCGCGCGGCCGCCTCGGGCTCCTGCTGCCTCCTGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3928#0 ------------------------------------------------------------ consensus_3928#1 CCTTTTTTTTTTTAAGATAAGACCGAGGAACACCGTGTTGGACTTATTGGCAACAAGTCC 60 consensus_3928#0 ------------------------------------------------------------ consensus_3928#1 ACAAAGTCAAAAGTCAAAGCTCATCCTCCCCATGCTGTTGCAGTCTTTGCCACATATATG 120 consensus_3928#0 -----------------------------------TCGCCGGAGAAGAAGACATCGCCAA 25 consensus_3928#1 AAGCCAAGCAGGTCAGTCACGGGCTTCACGTCGCCTCGCCGGAGAAGAAGACATCGCCAA 180 ************************* consensus_3928#0 CATATACCCCCCCTCCCTACCTAGACTCAGATCAGATCACCTGCCCATCGACGAGCACAA 85 consensus_3928#1 CATATACCCCCCCTCCCTACCTAGACTCAGATCAGATCACCTGCCCATCGACGAGCACAA 240 ************************************************************ consensus_3928#0 GAGCGATCCATTCCTGGTTTGAATCGAGCTTGGTTTGTTTGGTTGGTTGGTTTCTTGGAG 145 consensus_3928#1 GAGCGATCCATTCCTGGTTTGAATCGAGCTTGGTTTGTTTGGTTGGTTGGTTTCTTGGAG 300 ************************************************************ consensus_3928#0 TGGATGATGGCGAGGTGGTGCGTGGGGTGGCCGGCGGCGGCGAGGGGTGGTCGGGATGAG 205 consensus_3928#1 TGGATGATGGCGAGGTGGTGCGTGGGGTGGCCGGCGGCGGCGAGGGGTGGTCGGGATGAG 360 ************************************************************ consensus_3928#0 CTGACGTGGCAGGCGGAGCTGACGGCGCACGCGGCGGGGGAGTTCTCCATGGCGGCGGCG 265 consensus_3928#1 CTGACGTGGCAGGCGGAGCTGACGGCGCACGCGGCGGGGGAGTTCTCCATGGCGGCGGCG 420 ************************************************************ consensus_3928#0 CAGGCCAACGCGGTGATGGAGGACCAGGCGCAGGTCATGGCGTCGCCCGGCGCCACGCTC 325 consensus_3928#1 CAGGCCAACGCGGTGATGGAGGACCAGGCGCAGGTCATGGCGTCGCCCGGCGCCACGCTC 480 ************************************************************ consensus_3928#0 GTCGGCGTCTATGATGGCCATGGCGGCCCCGACGCCTCCCGCTTCCTCCGCTCCCGCCTA 385 consensus_3928#1 GTCGGCGTCTATGATGGCCATGGCGGCCCCGACGCCTCCCGCTTCCTCCGCTCCCGCCTA 540 ************************************************************ consensus_3928#0 TTCCCTCTCATCCATGAGTTCGCGGCGGAGCGCGGCGGCGCGGTGGACGCCGACGTGATC 445 consensus_3928#1 TTCCCTCTCATCCATGG---TGCGTGCGCTCGCCGGCGCGCGGCGGAGCTCGATCTTGT- 596 **************** *** * *** * ****** *** *** * * consensus_3928#0 CGGAAGGCGTTCCTGGCGGCCGACGAGGAGTACCTCCAGCTGCTGCGGTGGTCGCTGCCG 505 consensus_3928#1 -----GGTTTGATTTGAATACGTTGGCAAGAATCTTTAGCTGATTTTGTTGGCGCCA--A 649 ** * * * ** * ** * ** ***** * ** * *** consensus_3928#0 AACATGTCCCGCGCGGC-CGCCTCGGGCTCCTGCTGCCTCCTGGGCGCCATCTCCGGCGA 564 consensus_3928#1 AAATTGATGAGCAGAGTTCGCGGCGGAGCGCGGCGGCGCGGTGGACGCCGAC----GTGA 705 ** ** ** * *** *** * ** ** *** **** * * ** consensus_3928#0 CACGCTCTACGTCGCCAACG-CCGGCGACTCCCGCGCTGTCCTCGGCCGCCGCG-CGGCG 622 consensus_3928#1 TCCGGAAGGCGTTCCTGGCGGCCGACGA-----GGAGTACCTCCAGCTGCTGCGGTGGTC 760 ** *** * ** *** *** * * * * ** ** *** ** consensus_3928#0 GCCGGCCAGACCGTCGCCGAGCGGCTCTCCACCGAGCACAACGTGGCCTCGGAGGAGGTC 682 consensus_3928#1 GCTGCCGAACATGTC-CCGCGCGGCCGCCT--CGGGCTCC-TGCTGCCTCCTGG------ 810 ** * * * *** *** ***** * ** ** * * ***** * consensus_3928#0 CGGAGGGAGCTCGCCGCGCTCCACCCCGACGACGGCGAGGTCGTGGTCCACGCCCGCGGC 742 consensus_3928#1 ------------------------------------------------------------ consensus_3928#0 GCGTGGAGGGTGAAGGGGATCATCCAGGTGGCGCGCGCCATCGGCGACGTGTACCTCAAG 802 consensus_3928#1 ------------------------------------------------------------ consensus_3928#0 ACGCCGGAGTTCAAGCGCGACCCGGCGGTGCAGCGGTTATGCAGCGCCGCCGCCGCCGTC 862 consensus_3928#1 ------------------------------------------------------------ consensus_3928#0 GAGCTGGCGCGGCCGGTGGTCACCGCCGAGCCGTCCATCCACGCCCGGAAGCTCAAGGCG 922 consensus_3928#1 ------------------------------------------------------------ consensus_3928#0 GGCGTCGACCTGTTCGTCGTGTTCGCCTCCGACGGCCTATGGGAGCACCTCTCCGACGAG 982 consensus_3928#1 ------------------------------------------------------------ consensus_3928#0 GCGGCGGTGCAGCTGGTGTCCAAGAGCTCGACGAGGAGAGGCGTGGCGGCGAGGCTGGTG 1042 consensus_3928#1 ------------------------------------------------------------ consensus_3928#0 CAGGCAGCGCTCGGGGAGGCGGCGAGGAAGCGGGAGGTGAGGCGCGGCGACCTGCGGCGG 1102 consensus_3928#1 ------------------------------------------------------------ consensus_3928#0 ATCGAGCGAGGGGTGAGGCGCCACTTCCACGACGACATCACCGCCGTCGTCGTCTTCCTC 1162 consensus_3928#1 ------------------------------------------------------------ consensus_3928#0 GACCTCGACGACGACGGCGGCCGCCGCGCGCGCCGCCGTGGCAGGGTCGTCGACTCCAGC 1222 consensus_3928#1 ------------------------------------------------------------ consensus_3928#0 AGCAGCAGAAGCGGCA 1238 consensus_3928#1 ---------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||