These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3939#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 771 fasta sequence [GCTGCTCGCCCTGGTGGCGTCCCTCGCCGCGGCGCGGGGCGCGGACGCCATCTGCAACATGTCGAACGGCGACTTCAGGCTGTGCCAGCCGGCGGCGGCGGCGAGCGACCCGACGGACGGCCCGTCGGCGGAGTGCTGCGCGGCGCTGGGGGAGGCCGACCTGGCGTGCATCTGCCGGTACAAGGGCGTCGCCGGCTTCTGGATGAGGATCTACCACATCGACGCCGCCCGCGCCATGGCGCTGCCCGGCAAGTGCGGCCTCACCATGCCCACCAACTGCTCCTGATCGATCCATCCATCGATCTAGCTCCGCGCGTCTCTGCATTATATTATTTCCGTCACGACACTAGCTTTGTGTGTGCAACGAAAAGTATGCTGGTTAAATAATTAACGTGCTGGTGAACTTAAACTAATCACCATGCATGCTCCTAGCCGATCGATCTTACTGTTGTGTAATTCATCCACAATTCCACATGTACTGAAGTGTGCATGGTTCGATCTTGATTTAGTATATGTAATTGTGTAAGTGTGTCGGCAATGCAAGAAGCCAATGTTAGCGTCCCGTATAATGATAAGTTATCAGGGCTTGTTATTTGGCAATTAAAAAAAAAAACAAAAAATTGGAGGGGGGGCCCGGGCCCAATTTGCCTATATCGAGTTTATTACGCCCGCTCCTGGCCGTCTTTTACAACTTAGGACTGGAAAAACCTGGTGTTCCCATGTAATAGCCTTGGATAAATTCCTTTCTGCAGTCGGTGTATAGTTATAGAT] [+] EMBL BE041027 [GCTGCTCGCCCTGGTGGCGTCCCTCGCCGCGGCGCGGGGCGCGGACGCCATCTGCAACATGTCGAACGGCGACTTCAGGCTGTGCCAGCCGGCGGCGGCGGCGAGCGACCCGACGGACGGCCCGTCGGCGGAGTGCTGCGCGGCGCTGGGGGAGGCCGACCTGGCGTGCATCTGCCGGTACAAGGGCGTCGCCGGCTTCTGGATGAGGATCTACCACATCGACGCCGCCCGCGCCATGGCGCTGCCCGGCAAGTGCGGCCTCACCATGCCCACCAACTGCTCCTGATCGATCCATCCATCGATCTAGCTCCGCGCGTCTCTGCATTATATTATTTCCGTCACGACACTAGCTTTGTGTGTGCAACGAAAAGTATGCTGGTTAAATAATTAACGTGCTGGTGAACTTAAACTAATCACCATGCATGCTCCTAGCCGATCGATCTTACTGTTGTGTAATTCATCCACAATTCCACATGTACTGAAGTGTGCATGGTTCGATCTTGATTTAGTATATGTAATTGTGTAAGTGTGTCGGCAATGCAAGAAGCCAATGTTAGCGTCCCGTATAATGATAAGTTATCAGGGCTTGTTATTTGGCAATTAAAAAAAAAAACAAAAAATTGGAGGGGGGGCCCGGGCCCAATTTGCCTATATCGAGTTTATTACGCCCGCTCCTGGCCGTCTTTTACAACTTAGGACTGGAAAAACCTGGTGTTCCCATGTAATAGCCTTGGATAAATTCCTTTCTGCAGTCGGTGTATAGTTATAGAT] consensusID : consensus_3939#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 309 fasta sequence [CCGCTAGCCCAGAGAGAGTTAAAACAGAATGGCGGCCAAGGCGCAGGCGGTGCTGCTGCTCTCCCTGGTGGCGTCCCTAGCCGCGGCGCTGGGCGGCAGGGCATCTGCAACATGTCGAACGGCGACTTCAAGCTGTGCCAGCCGGCGGCGGCCGTNAGCNACCCGACGGACGGCCCGTCGGCGGAGTGCTGCGCGGCGCTGGGGGAGGCCGACCTGGCGTGCATCTGCCGGTAGAAGGGCGTCGCGGCTTCTGGATGAGGATCTACCACATCGACGCCGCCCGGNCATGGGTTTCCCGGCAAGTNGGCC] [+] EMBL C27431 [CCGCTAGCCCAGAGAGAGTTAAAACAGAATGGCGGCCAAGGCGCAGGCGGTGCTGCTGCTCTCCCTGGTGGCGTCCCTAGCCGCGGCGCTGGGCGGCAGGGCATCTGCAACATGTCGAACGGCGACTTCAAGCTGTGCCAGCCGGCGGCGGCCGTNAGCNACCCGACGGACGGCCCGTCGGCGGAGTGCTGCGCGGCGCTGGGGGAGGCCGACCTGGCGTGCATCTGCCGGTAGAAGGGCGTCGCGGCTTCTGGATGAGGATCTACCACATCGACGCCGCCCGGNCATGGGTTTCCCGGCAAGTNGGCC] consensusID : consensus_3939#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 253 fasta sequence [AAGTGCGGCCTCACCATGCCCACCNNCTGCTCCTGATCGATTGATATGNTCATNACANTAGCTATGTGTGCAACGAAANATATGCTGGTTAAATAAATAACGTACTGTTGTGAAATTCATCCCCATGTACTGAAGTGTGCATGGNTCGATCTTGTTTTAGTATATGTAACAGTGTAAGTGTGTCGGCGATGCAAGAAGCCAATGTTAGCTCCCATATAATGATAAGTTATCGGGGCTTGTCATTTAAAAAAAA] [+] EMBL AU100823 [AAGTGCGGCCTCACCATGCCCACCNNCTGCTCCTGATCGATTGATATGNTCATNACANTAGCTATGTGTGCAACGAAANATATGCTGGTTAAATAAATAACGTACTGTTGTGAAATTCATCCCCATGTACTGAAGTGTGCATGGNTCGATCTTGTTTTAGTATATGTAACAGTGTAAGTGTGTCGGCGATGCAAGAAGCCAATGTTAGCTCCCATATAATGATAAGTTATCGGGGCTTGTCATTTAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3939#0 GCTGCTCGCCCTGGTGGCGTCCCTCGCCGCGGCGCGGGGCGCGGACGCCATCTGCAACAT 60 consensus_3939#2 ------------------------------------------------------------ consensus_3939#1 ------------------------------------------------------------ consensus_3939#0 GTCGAACGGCGACTTCAGGCTGTGCCAGCCGGCGGCGGCGGCGAGCGACCCGACGGACGG 120 consensus_3939#2 ------------------------------------------------------------ consensus_3939#1 ------------------------------------------------------------ consensus_3939#0 CCCGTCGGCGGAGTGCTGCGCGGCGCTGGGGGAGGCCGACCTGGCGTGCATCTGCCGGTA 180 consensus_3939#2 ------------------------------------------------------------ consensus_3939#1 ------------------------------------------------------------ consensus_3939#0 CAAGGGCGTCGCCGGCTTCTGGATGAGGATCTACCACATCGACGCCGCCCGCGCCATGGC 240 consensus_3939#2 ------------------------------------------------------------ consensus_3939#1 ----------------------------------------------CCGCTAGCCCAGAG 14 consensus_3939#0 GCTGCCCGGCAAGTGCGGCCTCACCATGCCCACCAACTGCTCCTGATCGATCCATCCATC 300 consensus_3939#2 ----------AAGTGCGGCCTCACCATGCCCACCNNCTGCTCCTGATCGATTGATATGN- 49 consensus_3939#1 AGAGTTAAAACAGAATGGCGGC-CAAGGCGCAGGCGGTGCTGCTGCTCTCCCTGGTGGCG 73 ** *** * * * ** ** **** *** ** consensus_3939#0 GATCTAGCTCCGCGCGTCTCTGCATTATATTATTTCCGTCACGACACTAGCTTTGTGTGT 360 consensus_3939#2 --------------------------------------TCATNACANTAGCT--ATGTGT 69 consensus_3939#1 TCCCTAGCCGCGGCGCTGGG----------------CGGCAGGGCATCTGCA--ACATGT 115 ** ** ** *** consensus_3939#0 GCAACGAAAAGT--ATGCTGGTTAAATAATTAACGTGCTGGTGAACTTAAACTAATCACC 418 consensus_3939#2 GCAACGAAANAT--ATGCTGGTTAAATAAATAACGT------------------------ 103 consensus_3939#1 CGAACGGCGACTTCAAGCTGTGCCAGCCGGCGGCGGCCG--------------------- 154 **** * * **** * ** consensus_3939#0 ATGCATGCTCCTAGCCGATCGATCTTACTGTTGTGTAATTCATCCACAATTCCACATGTA 478 consensus_3939#2 --------------------------ACTGTTGTGAAATTCAT--------CCCCATGTA 129 consensus_3939#1 --------------------------TNAGCNACCCGACGGACGGCCCGTCGGCGGAGTG 188 * * * ** consensus_3939#0 CTGAAGTGTGCATGGTTCGATCTTGATTTAGTATATGTAATTGTGTAAGTGTGTCGGCAA 538 consensus_3939#2 CTGAAGTGTGCATGGNTCGATCTTGTTTTAGTATATGTAACAGTGTAAGTGTGTCGGCGA 189 consensus_3939#1 CTGCGCGGCGCTGGGGGAGGCCGACCTGGCGTGCATCTGCCGGTAGAAGGGCGTCGCGGC 248 *** * ** ** * * * ** ** * ** *** * **** consensus_3939#0 TGCAAGAAGCCAATGTTAGCGTCCCGTATAATGATAAGTTATCAGGGCTTGTTATTTGGC 598 consensus_3939#2 TGCAAGAAGCCAATGTTAGC-TCCCATATAATGATAAGTTATCGGGGCTTGTCATTTAAA 248 consensus_3939#1 TTCTGGATGAGGAT-CTACCACATCG-ACGCCGCCCGGNCAT--GGGTTTCCCGGCAAGT 304 * * ** * ** ** * * * * * ** *** ** consensus_3939#0 AATTAAAAAAAAAAACAAAAAATTGGAGGGGGGGCCCGGGCCCAATTTGCCTATATCGAG 658 consensus_3939#2 AAAAA------------------------------------------------------- 253 consensus_3939#1 NGGCC------------------------------------------------------- 309 consensus_3939#0 TTTATTACGCCCGCTCCTGGCCGTCTTTTACAACTTAGGACTGGAAAAACCTGGTGTTCC 718 consensus_3939#2 ------------------------------------------------------------ consensus_3939#1 ------------------------------------------------------------ consensus_3939#0 CATGTAATAGCCTTGGATAAATTCCTTTCTGCAGTCGGTGTATAGTTATAGAT 771 consensus_3939#2 ----------------------------------------------------- consensus_3939#1 ----------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||