These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3941#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 827 fasta sequence [CCTTTTTTTGCGGCAAGAATCATCATTATATATAATGGAGAGCTTAGTGGTGGGTGAAAATCCACCGTAGATATGATATGATTTATCCTCGTCCAGGGGCCAAGACATGCCTAGGGCTGGTAGTGCTTAAATTCTAGGCCAAACTCTGCAATCCAATTCAGGCCCTATAAAAATACAATAGAAATTCTGAAAATATATAATGGGTAGTTAAGGGCATATTTGCTCAGCCCTAGCCGCCTTGGCTTTTCCTATGGCTCAATCCTTGTCCTCATCAATCTTGTTGAGCTTTCACCGAAGCTTCGGTAGATACTTATTATCCTGCTTGCAAGGAAATGGCACGATGCTCTCTTCTAATGTTGCATAAAAGCAAGATATTTCATTCAAAATGAAGGGAAGTGTTGTGATCAACAATCAAGCTTAAAGATGAGTGCAGGACATTCTTAATAACCTAACTAGTAAATACTACTTGACTGCAACTTCAAATCTATTTGCTTTGTAAAAAAATGCATGTACGGTTTTGAGCGCCTAGGAAAAAAAATGCATGCCCTTGTATTTAGATTGTTTATTTCAGTTAGCTAAACTTCCACTATTATCACTTCTAGACCATGGTTGAACCTCCAGGTGTTCATAATCGATGTTCCAAATAGTTAACATATGATGTTCCAGTTCCAGTGGTATCGATAGTATTTAGATTTCATTTTCAAACAATAAAACCAGAAACTTTACACCTCTAAACTACCATACTGTGTATAATGATAGTTACTTCCTAGGATGTTGTTTTTTCCTTTATTTTTAGAGGACTCCTTAAACTACCATATCTGTGCTTG] [+] EMBL CB669507 [CCTTTTTTTGCGGCAAGAATCATCATTATATATAATGGAGAGCTTAGTGGTGGGTGAAAATCCACCGTAGATATGATATGATTTATCCTCGTCCAGGGGCCAAGACATGCCTAGGGCTGGTAGTGCTTAAATTCTAGGCCAAACTCTGCAATCCAATTCAGGCCCTATAAAAATACAATAGAAATTCTGAAAATATATAATGGGTAGTTAAGGGCATATTTGCTCAGCCCTAGCCGCCTTGGCTTTTCCTATGGCTCAATCCTTGTCCTCATCAATCTTGTTGAGCTTTCACCGAAGCTTCGGTAGATACTTATTATCCTGCTTGCAAGGAAATGGCACGATGCTCTCTTCTAATGTTGCATAAAAGCAAGATATTTCATTCAAAATGAAGGGAAGTGTTGTGATCAACAATCAAGCTTAAAGATGAGTGCAGGACATTCTTAATAACCTAACTAGTAAATACTACTTGACTGCAACTTCAAATCTATTTGCTTTGTAAAAAAATGCATGTACGGTTTTGAGCGCCTAGGAAAAAAAATGCATGCCCTTGTATTTAGATTGTTTATTTCAGTTAGCTAAACTTCCACTATTATCACTTCTAGACCATGGTTGAACCTCCAGGTGTTCATAATCGATGTTCCAAATAGTTAACATATGATGTTCCAGTTCCAGTGGTATCGATAGTATTTAGATTTCATTTTCAAACAATAAAACCAGAAACTTTACACCTCTAAACTACCATACTGTGTATAATGATAGTTACTTCCTAGGATGTTGTTTTTTCCTTTATTTTTAGAGGACTCCTTAAACTACCATATCTGTGCTTG] [-] EMBL CF311740 [ aAGTGGTGGGTGAAAATCCACCGTAGATATGATATGATTTATCCTCGTCCAGGGGCCAAGACATGCCTAGGGCTGGTAGTGCTTAAATTCTAGGCCAAACTCTGCAATCCAATTCAGGCCCTATAAAAATACAATAGAAATTCTGAAAATATATAATGGGTAGTTAAGGGCATATTTGCTCAGCCCTAGCCGCCTTGGCTTTTCCTATGGCTCAATCCTTGTCCTCATCAATCTTGTTGAGCTTTCACCGAAGCTTCGGTAGATACTTATTATCCTGCTTGCAAGGAAATGGCACGATGCTCTCTTCTAATGTTGCATAAAAGCAAGATATTTCATTCAAAATGAAGGGAAGTGTTGTGATCAACAATCAAGCTTAAAGATGAGTGCAGGACATTCTTAATAACCTA ] consensusID : consensus_3941#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 513 fasta sequence [GAATCATCATTATATATAATGGAGAGTAAAGTGGTGGGTGAAAATCCACCGTAGATATGATATGATTTATCCTCGTCCAGGGGCCAAGACATGCCTAGGGCTGGTAGTGCTTAAATTCTAGGCCAAACTCTGTAATCCAATCCAGGCCCTATAAAAATACAATAGAAATTCTGAAAATATATAATGGGTAGTTAAGGGCATATTTGCTCAGCCCTAGCCGCCTTGGCTTTTCCTATGGCTCAATCCTTGTCCTCATCAATCTTGTTGAGCTTTCACCGAAGCTTCGGTAGATACTTATTATCCTGCTTGCAAGGAAATGGCACGATGCTCTCTTCTTCGTGATGAGAGCGAAATCCCCCGCCCAATTCTTCCGGAGAAGGAGGAAGAGAAAAAGGCGCTCACGGCGACGGCGGGGGAAGAGGTGGTTAGAACCCTTGATGCTGTCGCTTCGTCGTCGACGGGGAGCGGCGGATCGATGAGCGCGCCTCGTCCTCCGCGGCGATGGAATCCGTG] [-] EMBL AK111070 [GAATCATCATTATATATAATGGAGAGTAAAGTGGTGGGTGAAAATCCACCGTAGATATGATATGATTTATCCTCGTCCAGGGGCCAAGACATGCCTAGGGCTGGTAGTGCTTAAATTCTAGGCCAAACTCTGTAATCCAATCCAGGCCCTATAAAAATACAATAGAAATTCTGAAAATATATAATGGGTAGTTAAGGGCATATTTGCTCAGCCCTAGCCGCCTTGGCTTTTCCTATGGCTCAATCCTTGTCCTCATCAATCTTGTTGAGCTTTCACCGAAGCTTCGGTAGATACTTATTATCCTGCTTGCAAGGAAATGGCACGATGCTCTCTTCTTCGTGATGAGAGCGAAATCCCCCGCCCAATTCTTCCGGAGAAGGAGGAAGAGAAAAAGGCGCTCACGGCGACGGCGGGGGAAGAGGTGGTTAGAACCCTTGATGCTGTCGCTTCGTCGTCGACGGGGAGCGGCGGATCGATGAGCGCGCCTCGTCCTCCGCGGCGATGGAATCCGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3941#0 CCTTTTTTTGCGGCAAGAATCATCATTATATATAATGGAGAGCTTAGTGGTGGGTGAAAA 60 consensus_3941#1 ----------------GAATCATCATTATATATAATGGAGAGTAAAGTGGTGGGTGAAAA 44 ************************** *************** consensus_3941#0 TCCACCGTAGATATGATATGATTTATCCTCGTCCAGGGGCCAAGACATGCCTAGGGCTGG 120 consensus_3941#1 TCCACCGTAGATATGATATGATTTATCCTCGTCCAGGGGCCAAGACATGCCTAGGGCTGG 104 ************************************************************ consensus_3941#0 TAGTGCTTAAATTCTAGGCCAAACTCTGCAATCCAATTCAGGCCCTATAAAAATACAATA 180 consensus_3941#1 TAGTGCTTAAATTCTAGGCCAAACTCTGTAATCCAATCCAGGCCCTATAAAAATACAATA 164 **************************** ******** ********************** consensus_3941#0 GAAATTCTGAAAATATATAATGGGTAGTTAAGGGCATATTTGCTCAGCCCTAGCCGCCTT 240 consensus_3941#1 GAAATTCTGAAAATATATAATGGGTAGTTAAGGGCATATTTGCTCAGCCCTAGCCGCCTT 224 ************************************************************ consensus_3941#0 GGCTTTTCCTATGGCTCAATCCTTGTCCTCATCAATCTTGTTGAGCTTTCACCGAAGCTT 300 consensus_3941#1 GGCTTTTCCTATGGCTCAATCCTTGTCCTCATCAATCTTGTTGAGCTTTCACCGAAGCTT 284 ************************************************************ consensus_3941#0 CGGTAGATACTTATTATCCTGCTTGCAAGGAAATGGCACGATGCTCTCTTCTAATGTTGC 360 consensus_3941#1 CGGTAGATACTTATTATCCTGCTTGCAAGGAAATGGCACGATGCTCTCTTCT--TCGTG- 341 **************************************************** * ** consensus_3941#0 ATAAAAGCAAGATATTTCATTCAAAATGAAGGGAAGTGTTGTGATCAACAATCAAGCTTA 420 consensus_3941#1 ATGAGAGCGAAATCCCCCGCCCAATTCTTCCGGAGAAGGAGGAAGAGAAAAAGGCGCTCA 401 ** * *** * ** * *** *** * * * * ** *** * consensus_3941#0 AAGATGAGTGCAGGACATTCTTAATAACCTAACTAGTAAATACTACTTGACTGCAACTTC 480 consensus_3941#1 C-GGCGACGGCGGGGGAAG--AGGTGGTTAGAACCCTTGATGCTGTC--GCTTCGTCGTC 456 * ** ** ** * * * * ** ** ** * * ** consensus_3941#0 AAATCTATTTGCTTTGTAAAAAAATGCATGTACGGTTTTGAGCGCCTAGGAAAAAAAATG 540 consensus_3941#1 GACGGGGAGCGGCGGATCGATGAGCGC-------GCCTCGTCCTCCGCGGCGATGGAATC 509 * * * * * ** * * * * ** ** * *** consensus_3941#0 CATGCCCTTGTATTTAGATTGTTTATTTCAGTTAGCTAAACTTCCACTATTATCACTTCT 600 consensus_3941#1 CGTG-------------------------------------------------------- 513 * ** consensus_3941#0 AGACCATGGTTGAACCTCCAGGTGTTCATAATCGATGTTCCAAATAGTTAACATATGATG 660 consensus_3941#1 ------------------------------------------------------------ consensus_3941#0 TTCCAGTTCCAGTGGTATCGATAGTATTTAGATTTCATTTTCAAACAATAAAACCAGAAA 720 consensus_3941#1 ------------------------------------------------------------ consensus_3941#0 CTTTACACCTCTAAACTACCATACTGTGTATAATGATAGTTACTTCCTAGGATGTTGTTT 780 consensus_3941#1 ------------------------------------------------------------ consensus_3941#0 TTTCCTTTATTTTTAGAGGACTCCTTAAACTACCATATCTGTGCTTG 827 consensus_3941#1 ----------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||