These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3963#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 773 fasta sequence [CCTTTTTTTTTTTTTTGATCCATTTTTAAAAAAAATTACGTGATAATAGACCGCTCCGTTTTCCGTGCGGAGAGAATCACCACTACATAAACTATTTTTTCCGTGCGGTCAAATTGATTTTTCCGTGCGGAGGTTTTCCCCGTCTGGACCCACGCGTCTGGAAAAATAAATATTTTCACGTGCGGGCGGCCAACTGCACAAGATAATCATTTTCCCGTGTGGTCGGGTTAAGTGGACCGCACGGGTTAATAGATTATCCCGTGCGGTCAAATTATTTCACCTGCACGGAATAAAAAAACCAAAAATAAAAAAAACACAAAAATCGAAAGTCGCCGTCGAGCCCGGCTGCCACATCGCCCGGCCGTCGCCTCGTGCGCCGCTCGCCGCTCATCGCTCCTTCGCCAAGCCGCGCGGTGCCGTGGCAGCCGTGGCGTCTGCCGCTTGTCCCACTCCTGTCGCTCCTTCGCCGAGCCGCACGATGCCTCGGCCGCCGCGCCGTCCGCCGCCCGTCCCGCGGCCGCCGCTCCTCCGCTCACCGAGCTGCCGCGTCACCTCCGCCAGCAGCCGTCGCGCCCTGCCAATAGAGCCGCCGACGCTGCCCCCGTGCCCTCTCCCGCCGCCACCTTCTCCTCCTCCTGGTCGCTCTCGCTGAGCCACTGCTTCCGCCGAGCCACTGCTCCCTCACGGGGAGGAGGGGAGGGGCCACCGCCGCCGTTGACGGGGGAGGGGAGGGGAAGGAGTAGGGGAAGGTGGGGAGGAGTGGCTGAGAATAG] [+] EMBL CB682714 [CCTTTTTTTTTTTTTTGATCCATTTTTAAAAAAAATTACGTGATAATAGACCGCTCCGTTTTCCGTGCGGAGAGAATCACCACTACATAAACTATTTTTTCCGTGCGGTCAAATTGATTTTTCCGTGCGGAGGTTTTCCCCGTCTGGACCCACGCGTCTGGAAAAATAAATATTTTCACGTGCGGGCGGCCAACTGCACAAGATAATCATTTTCCCGTGTGGTCGGGTTAAGTGGACCGCACGGGTTAATAGATTATCCCGTGCGGTCAAATTATTTCACCTGCACGGAATAAAAAAACCAAAAATAAAAAAAACACAAAAATCGAAAGTCGCCGTCGAGCCCGGCTGCCACATCGCCCGGCCGTCGCCTCGTGCGCCGCTCGCCGCTCATCGCTCCTTCGCCAAGCCGCGCGGTGCCGTGGCAGCCGTGGCGTCTGCCGCTTGTCCCACTCCTGTCGCTCCTTCGCCGAGCCGCACGATGCCTCGGCCGCCGCGCCGTCCGCCGCCCGTCCCGCGGCCGCCGCTCCTCCGCTCACCGAGCTGCCGCGTCACCTCCGCCAGCAGCCGTCGCGCCCTGCCAATAGAGCCGCCGACGCTGCCCCCGTGCCCTCTCCCGCCGCCACCTTCTCCTCCTCCTGGTCGCTCTCGCTGAGCCACTGCTTCCGCCGAGCCACTGCTCCCTCACGGGGAGGAGGGGAGGGGCCACCGCCGCCGT ] [-] EMBL AK119996 [ ATCATTTTCCCGTGTGGTCGGGTTAAGTGGACCGCACGGGTTAATAGATTATCCCGTGCGGTCAAATTATTTCACCTGCACGGAATAAAAAAACCAAAAATAAAAAAAACACAAAAATCGAAAGTCGCCGTCGAGCCCGGCTGCCACATCGCCCGGCCGTCGCCTCGTGCGCCGCTCGCCGCTCATCGCTCCTTCGCCAAGCCGCGCGGTGCCGTGGCAGCCGTGGCGTCTGCCGCTTGTCCCACTCCTGTCGCTCCTTCGCCGAGCCGCACGATGCCTCGGCCGCCGCGCCGTCCGCCGCCCGTCCCGCGGCCGCCGCTCCTCCGCTCACCGAGCTGCCGCGTCACCTCCGCCAGCAGCCGTCGCGCCCTGCCAATAGAGCCGCCGACGCTGCCCCCGTGCCCTCTCCCGCCGCCACCTTCTCCTCCTCCTGGTCGCTCTCGCTGAGCCACTGCTTCCGCCGAGCCACTGCTCCCTCACGGGGAGGAGGGGAGGGGCCACCGCCGCCGTTGACGGGGGAGGGGAGGGGAAGGAGTAGGGGAAGGTGGGGAGGAGTGGCTGAGAATAG] consensusID : consensus_3963#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 391 fasta sequence [TGTGGTTGGTTTATTTTGTGGCGGGCGGCCAACTGCACAAGATAATCATTTTCCCGTGTGGTCGGGTTAAGTGGACCGCACGGGTTAATAGATTATCCCGTGCGGTCAAATTATTTCTCCTGCACGGAATAAAAAAACCGAAAATAAAAAAAACACAAAAATCGAAAGTCGCCGTCGAGCCCGGCTGCCACATCGCCCGGCCGTCGCCTCGTGCGCCGCTCGCCGCTCATCGCTCCTTCGCCAAGCCGCGCGGTGCCGTGGCAGCCGTGGCGTCTGCCGCTTGTCCCACTCCTGTCGCTCCTTCGCCGAGCCGGGGATGCCTCGGCCGCCGCGCCGTCCGCCGCCCGTCCCGCGGCCGCCGCTCCTCCGCTCACCGAGCTGCTAAGGCGCC] [-] EMBL CB681880 [TGTGGTTGGTTTATTTTGTGGCGGGCGGCCAACTGCACAAGATAATCATTTTCCCGTGTGGTCGGGTTAAGTGGACCGCACGGGTTAATAGATTATCCCGTGCGGTCAAATTATTTCTCCTGCACGGAATAAAAAAACCGAAAATAAAAAAAACACAAAAATCGAAAGTCGCCGTCGAGCCCGGCTGCCACATCGCCCGGCCGTCGCCTCGTGCGCCGCTCGCCGCTCATCGCTCCTTCGCCAAGCCGCGCGGTGCCGTGGCAGCCGTGGCGTCTGCCGCTTGTCCCACTCCTGTCGCTCCTTCGCCGAGCCGGGGATGCCTCGGCCGCCGCGCCGTCCGCCGCCCGTCCCGCGGCCGCCGCTCCTCCGCTCACCGAGCTGCTAAGGCGCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3963#0 CCTTTTTTTTTTTTTTGATCCATTTTTAAAAAAAATTACGTGATAATAGACCGCTCCGTT 60 consensus_3963#1 ------------------------------------------------------------ consensus_3963#0 TTCCGTGCGGAGAGAATCACCACTACATAAACTATTTTTTCCGTGCGGTCAAATTGATTT 120 consensus_3963#1 ------------------------------------------------------------ consensus_3963#0 TTCCGTGCGGAGGTTTTCCCCGTCTGGACCCACGCGTCTGGAAAAATAAATATTTTCACG 180 consensus_3963#1 ----------------------------------------TGTGGTTGGTTTATTTTGTG 20 * * *** * consensus_3963#0 TGCGGGCGGCCAACTGCACAAGATAATCATTTTCCCGTGTGGTCGGGTTAAGTGGACCGC 240 consensus_3963#1 -GCGGGCGGCCAACTGCACAAGATAATCATTTTCCCGTGTGGTCGGGTTAAGTGGACCGC 79 *********************************************************** consensus_3963#0 ACGGGTTAATAGATTATCCCGTGCGGTCAAATTATTTCACCTGCACGGAATAAAAAAACC 300 consensus_3963#1 ACGGGTTAATAGATTATCCCGTGCGGTCAAATTATTTCTCCTGCACGGAATAAAAAAACC 139 ************************************** ********************* consensus_3963#0 AAAAATAAAAAAAACACAAAAATCGAAAGTCGCCGTCGAGCCCGGCTGCCACATCGCCCG 360 consensus_3963#1 GAAAATAAAAAAAACACAAAAATCGAAAGTCGCCGTCGAGCCCGGCTGCCACATCGCCCG 199 *********************************************************** consensus_3963#0 GCCGTCGCCTCGTGCGCCGCTCGCCGCTCATCGCTCCTTCGCCAAGCCGCGCGGTGCCGT 420 consensus_3963#1 GCCGTCGCCTCGTGCGCCGCTCGCCGCTCATCGCTCCTTCGCCAAGCCGCGCGGTGCCGT 259 ************************************************************ consensus_3963#0 GGCAGCCGTGGCGTCTGCCGCTTGTCCCACTCCTGTCGCTCCTTCGCCGAGCCGCACGAT 480 consensus_3963#1 GGCAGCCGTGGCGTCTGCCGCTTGTCCCACTCCTGTCGCTCCTTCGCCGAGCCGGG-GAT 318 ****************************************************** *** consensus_3963#0 GCCTCGGCCGCCGCGCCGTCCGCCGCCCGTCCCGCGGCCGCCGCTCCTCCGCTCACCGAG 540 consensus_3963#1 GCCTCGGCCGCCGCGCCGTCCGCCGCCCGTCCCGCGGCCGCCGCTCCTCCGCTCACCGAG 378 ************************************************************ consensus_3963#0 CTGCCGCGTCACCTCCGCCAGCAGCCGTCGCGCCCTGCCAATAGAGCCGCCGACGCTGCC 600 consensus_3963#1 CTGCTAAGGCGCC----------------------------------------------- 391 **** * * ** consensus_3963#0 CCCGTGCCCTCTCCCGCCGCCACCTTCTCCTCCTCCTGGTCGCTCTCGCTGAGCCACTGC 660 consensus_3963#1 ------------------------------------------------------------ consensus_3963#0 TTCCGCCGAGCCACTGCTCCCTCACGGGGAGGAGGGGAGGGGCCACCGCCGCCGTTGACG 720 consensus_3963#1 ------------------------------------------------------------ consensus_3963#0 GGGGAGGGGAGGGGAAGGAGTAGGGGAAGGTGGGGAGGAGTGGCTGAGAATAG 773 consensus_3963#1 ----------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||