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Oryza sativa
cluster # 3975 cluster # 3975       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3975#0 length = 2033 sequences # 3  

consensusID : consensus_3975#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 2033
fasta sequence
                              [AACTGTGCCCTTCAACGGGGATGATGAACTCCCTTATACGGAAGCTCGCCACTGTGTCGAGCGAGGACATCGATGTGAGACCCTTGGAGAGGAAGATCATCAGAATTAACTCTGATCGCTTGTTGAAGGTGATCCATCATGTGGGGGACGCCCAAGCCATGGAGTGGATGCGGCAAATCCTGGAGGTGGCCTACGACGTGGAGGATTGGATTGATCTGTGCATCCATCTCCATGGGCGCGTTAGAGCAGATCAACTGGAACGGATAGAAGAATTCATTGTCCGGATAGACAACGTGGAAGAACGTCTGAGCAGACTTGATCCATCACTGTGAACGGAAAGTCCGGCTGAGAAGGGACCTTGTCTTGAATTTGATGGATAAGCTGGTGGTGGATTCCGACCAGCAGCTGAAGGTGCTTTTCATTCTCGGGGATAGGGGTATTGGTAAGACTACACTAGCCAGCCAGATTTATCATCGTACAATTGAAGAACGATTTGATTGCCGAGCTTTCGTTTCTGTTGGTCAATATAGCCTGTCAGATCAACCATACTGAACTGTACATCAAATCAGGCGGCGATGAGCACCAAGTCATTGATAACTTCAGGAATTTCCTCAGAAATAAGAGGTACTTCATTGTAATTGATGATATTTGGACTACAACGGCATGGAAGGCTATCAAATGTGCTTTCGCTGACAACAAAAATGGAAGCAGAATAATAACAACGGCGCACATCGACAAAGTATCCAGATTATCTTACAGGCATCACACTGATTTGGTCGTTATGCTTGGGGGTCTCAGTGAGGAGGAGTAGAGAATATTATTTGACAACATAATATCAGCCAGTCAAAGATATTTGTTGCCTCATTATCAGTTACATATTGGATTTAATGCACATAATGATATGCTAGGATGCACGCCTTTGGCCATAAGGATTGCAGCTGGTCTGTCACTGTCAGCATATCCTCCTCCTTATTCATATACTTCAGCTTTCAAGCAATATCCCCTCTTACAAGGGATAAAAAGGATGCTGCACATCAGTTATGCTTATCTGTCTTTGCCATTGAAGTCTTGCCTTTTGTACTTGAGTCTCTTTCCAGAAAATTGTACCATCTCGAAAGGTCGGTTGATACGGAGGTGGGCAGCTGAAGGTTTTATTGATGAAAGAGATGAAGGTAGCATCTGGGAAACAGGGGAGAGTTATTTTAACGAGCTTACCATCAGGCAATTGATTATGCGGGAGTTTATTGAGGACAAGACTAGCAACAATATTGATCTGGAAGATGGTAGTGGATTCGCAGTGGGCTGCAAAGTTCATGGTCTGGTTCATGATTTCATTGTGTCCTTGTCCAGTCGAGAGAATATGGTCACATCTGATGCAGAGCTAGGATCCATGCAGCGTGGTGTCATTCGGCGTCTAACCATAAAAAACGACTTCAGCAGTATCCCAAAAGACAGCACCCAGCCGTCAGGCTCAGGCACCATGGATGTACAATCCATAAACAGAGCACTTGCTTCCGCTCAAAAAGGGAAAATTAGATCACTTGCTTTTCTCGGGAATTCGAGGCTTCTCTCTGACGTCGTTGGATTCAAGCTTTTGAGGGTGTTGGATCTGGAAGATTGTAAGAGCTTGGGAAACGAGCATGTCCAAAAGATCCGGAGTTTGTTTCTACTGAGATACCTGGGCCTTAGAGGGACCGGTGTCACCGAGCTCCAAGAAGACATTGGAGAACTCCATGAGTTGCAGACCATAGATGTGAGGAGAACCCGCGTGAAACAGTTGCCTGTATCCGTGAATGAGCTAAAGAAATTGGTGTTCCTCCTGGGAGATGGTTTGCAAGCACAGGCTGGTATGACGGCTATGCAAAACCTGGAGGAAGTATCGACGATCGATGTCAGTGAGAGAAGCTCACTCGACATGGTCTCAGAGCTGCTAGTTAAGTCGAACTAGGAAGGTAGCCCGCGCATACGAGCGGGCATGCACCGTACGTAGGATAAATAAGGGAAACTTATAAAGGCGGTATACCAGCGAATTC]

[+] EMBL CB673030             [AACTGTGCCCTTCAACGGGGATGATGAACTCCCTTATACGGAAGCTCGCCACTGTGTCGAGCGAGGACATCGATGTGAGACCCTTGGAGAGGAAGATCATCAGAATTAACTCTGATCGCTTGTTGAAGGTGATCCATCATGTGGGGGACGCCCAAGCCATGGAGTGGATGCGGCAAATCCTGGAGGTGGCCTACGACGTGGAGGATTGGATTGATCTGTGCATCCATCTCCATGGGCGCGTTAGAGCAGATCAACTGGAACGGATAGAAGAATTCATTGTCCGGATAGACAACGTGGAAGAACGTCTGAGCAGACTTGATCCATCACTGTGAACGGAAAGTCCGGCTGAGAAGGGACCTTGTCTTGAATTTGATGGATAAGCTGGTGGTGGATTCCGACCAGCAGCTGAAGGTGCTTTTCATTCTCGGGGATAGGGGTATTGGTAAGACTACACTAGCCAGCCAGATTTATCATCGTACAATTGAAGAACGATTTGATTGCCGAGCTTTCGTTTCTGTTGGTCAATATAGCCTGTCAGATCAACCATACTGAACTGTACATCAAATCAGGCGGCGATGAGCACCAAGTCATTGATAACTTCAGGAATTTCCTCAGAAATAAGAGGTACTTCATTGTAATTGATGATATTTGGACTACAACGGCATGGAAGGCTATCAAATGTGCTTTCGCTGACAACAAAAATGGAAGCAGAATAATAACAACGGCGCACATCGACAAAGTATCCAGATTATCTTACAGGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CB642192             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ATCAACCATACTGAACTGTACATCAAATCAGGCGGCGATGATCACCAAGTCATTGATAACTTCAGGAATTTCCTCAGAAATAAGAGGTACTTCATTGTAATTGATGATATTTGGACTACAACGGCATGGAAGGCTATCAAATGTGCTTTCGCTGACAACAAAAATGGAAGCAGAATAATAACAACGGCGCAAATCGACAAAGTATCCAGATTATCTTACAGGCATCACACTGATTTGGTCGTTATGCTTGGGGGTCTCAGTGAGGAGGAGTAGAGAATATTATTTGACAACATAATATCAGCCAGTCAAAGATATTTGTTGCCTCATTATCAGTTACATATTGGATTTAATGCACATAATGATATGCTAGGATGCACGCCTTTGGCCATAAGGATTGCAGCTGGTCTGTCACTGTCAGCATATCCTCCTCCTTATTCATATACTTCAGCTTTCAAGCAATATCCCCTCTTACAAGGGATAAAAAGGATGCTGCACATCAGTTATGCTTATCTGTCTTTGCCATTGAAGTCTTGCCTTTTGTACTTGAGTCTCTTTCCAGAAAATTGTACCATCTCGAAAGGTCGGTTGATACGGAGGTGGGCAGCTGAAGGTTTTATTGATGAAAGAGATGAAGGTAGCATCTGGGAAACAGGGGAGAGTTATTTTAACGAGCTTACCATCAGGCAATTGATTATGCGGGAGTTTATTGAGGACAAGACTAGCAACAATATTGATCTGGAAGATGGTAGTGGATTCGCAGTGGGCTGCAAAGTTCATGGTCTGGTTCATGATTTCATTGTGTCCTTGTCCAGTCGAGAGAATATGGTCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL CB673031             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      AGTTTATTGAGGACAAGACTAGCAACAATATTGATCTGGAAGATGGTAGTGGATTCGCAGTGGGCTGCAAAGTTCATGGTCTGGTTCATGATTTCATTGTGTCCTTGTCCAGTCGAGAGAATATGGTCACATCTGATGCAGAGCTAGGATCCATGCAGCGTGGTGTCATTCGGCGTCTAACCATAAAAAACGACTTCAGCAGTATCCCAAAAGACAGCACCCAGCCGTCAGGCTCAGGCACCATGGATGTACAATCCATAAACAGAGCACTTGCTTCCGCTCAAAAAGGGAAAATTAGATCACTTGCTTTTCTCGGGAATTCGAGGCTTCTCTCTGACGTCGTTGGATTCAAGCTTTTGAGGGTGTTGGATCTGGAAGATTGTAAGAGCTTGGGAAACGAGCATGTCCAAAAGATCCGGAGTTTGTTTCTACTGAGATACCTGGGCCTTAGAGGGACCGGTGTCACCGAGCTCCAAGAAGACATTGGAGAACTCCATGAGTTGCAGACCATAGATGTGAGGAGAACCCGCGTGAAACAGTTGCCTGTATCCGTGAATGAGCTAAAGAAATTGGTGTTCCTCCTGGGAGATGGTTTGCAAGCACAGGCTGGTATGACGGCTATGCAAAACCTGGAGGAAGTATCGACGATCGATGTCAGTGAGAGAAGCTCACTCGACATGGTCTCAGAGCTGCTAGTTAAGTCGAACTAGGAAGGTAGCCCGCGCATACGAGCGGGCATGCACCGTACGTAGGATAAATAAGGGAAACTTATAAAGGCGGTATACCAGCGAATTC]


>consensus_3975#0 AACTGTGCCCTTCAACGGGGATGATGAACTCCCTTATACGGAAGCTCGCCACTGTGTCGA GCGAGGACATCGATGTGAGACCCTTGGAGAGGAAGATCATCAGAATTAACTCTGATCGCT TGTTGAAGGTGATCCATCATGTGGGGGACGCCCAAGCCATGGAGTGGATGCGGCAAATCC TGGAGGTGGCCTACGACGTGGAGGATTGGATTGATCTGTGCATCCATCTCCATGGGCGCG TTAGAGCAGATCAACTGGAACGGATAGAAGAATTCATTGTCCGGATAGACAACGTGGAAG AACGTCTGAGCAGACTTGATCCATCACTGTGAACGGAAAGTCCGGCTGAGAAGGGACCTT GTCTTGAATTTGATGGATAAGCTGGTGGTGGATTCCGACCAGCAGCTGAAGGTGCTTTTC ATTCTCGGGGATAGGGGTATTGGTAAGACTACACTAGCCAGCCAGATTTATCATCGTACA ATTGAAGAACGATTTGATTGCCGAGCTTTCGTTTCTGTTGGTCAATATAGCCTGTCAGAT CAACCATACTGAACTGTACATCAAATCAGGCGGCGATGAGCACCAAGTCATTGATAACTT CAGGAATTTCCTCAGAAATAAGAGGTACTTCATTGTAATTGATGATATTTGGACTACAAC GGCATGGAAGGCTATCAAATGTGCTTTCGCTGACAACAAAAATGGAAGCAGAATAATAAC AACGGCGCACATCGACAAAGTATCCAGATTATCTTACAGGCATCACACTGATTTGGTCGT TATGCTTGGGGGTCTCAGTGAGGAGGAGTAGAGAATATTATTTGACAACATAATATCAGC CAGTCAAAGATATTTGTTGCCTCATTATCAGTTACATATTGGATTTAATGCACATAATGA TATGCTAGGATGCACGCCTTTGGCCATAAGGATTGCAGCTGGTCTGTCACTGTCAGCATA TCCTCCTCCTTATTCATATACTTCAGCTTTCAAGCAATATCCCCTCTTACAAGGGATAAA AAGGATGCTGCACATCAGTTATGCTTATCTGTCTTTGCCATTGAAGTCTTGCCTTTTGTA CTTGAGTCTCTTTCCAGAAAATTGTACCATCTCGAAAGGTCGGTTGATACGGAGGTGGGC AGCTGAAGGTTTTATTGATGAAAGAGATGAAGGTAGCATCTGGGAAACAGGGGAGAGTTA TTTTAACGAGCTTACCATCAGGCAATTGATTATGCGGGAGTTTATTGAGGACAAGACTAG CAACAATATTGATCTGGAAGATGGTAGTGGATTCGCAGTGGGCTGCAAAGTTCATGGTCT GGTTCATGATTTCATTGTGTCCTTGTCCAGTCGAGAGAATATGGTCACATCTGATGCAGA GCTAGGATCCATGCAGCGTGGTGTCATTCGGCGTCTAACCATAAAAAACGACTTCAGCAG TATCCCAAAAGACAGCACCCAGCCGTCAGGCTCAGGCACCATGGATGTACAATCCATAAA CAGAGCACTTGCTTCCGCTCAAAAAGGGAAAATTAGATCACTTGCTTTTCTCGGGAATTC GAGGCTTCTCTCTGACGTCGTTGGATTCAAGCTTTTGAGGGTGTTGGATCTGGAAGATTG TAAGAGCTTGGGAAACGAGCATGTCCAAAAGATCCGGAGTTTGTTTCTACTGAGATACCT GGGCCTTAGAGGGACCGGTGTCACCGAGCTCCAAGAAGACATTGGAGAACTCCATGAGTT GCAGACCATAGATGTGAGGAGAACCCGCGTGAAACAGTTGCCTGTATCCGTGAATGAGCT AAAGAAATTGGTGTTCCTCCTGGGAGATGGTTTGCAAGCACAGGCTGGTATGACGGCTAT GCAAAACCTGGAGGAAGTATCGACGATCGATGTCAGTGAGAGAAGCTCACTCGACATGGT CTCAGAGCTGCTAGTTAAGTCGAACTAGGAAGGTAGCCCGCGCATACGAGCGGGCATGCA CCGTACGTAGGATAAATAAGGGAAACTTATAAAGGCGGTATACCAGCGAATTC



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)