These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3984#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1564 fasta sequence [GTTTTGCCACGGAGAAGGGTCACCTGGGAAATTATTGTTTAGGCTGACGTGATGCTCCAGGGAGTCCTGTCGCGAGCTCCCGGCGCCGACGCGGCAGCGATGAAGGCGAAGCGCGCGGCCGACGACGAGGAGGAAGGCGGCGAGCGGGAGCGCGCGCGTGGGAAGCGGCTGGCTGCTGAGGGGAAGCAAGGGTTAGTGGTGGTGAGTACGGGGGAGGAGGAGGAGGCGGCGGCGGAGACGCGTGGGCTGCGGCTGCTTAGTTTGTTGCTGAGGTGTGCGGAGGCGGTGGCGATGGACCAGCTGCCGGAGGCGCGGGACCTGCTGCCGGAGATCGCCGAGCTGGCGTCGCCGTTCGGGTCGTCGCCCGAGCGCGTCGCGGCCTACTTCGGGGACGCGCTGTGCGCGCGCGTGCTGAGCTCCTACCTGGGGGCCTACTCGCCGCTGGCGCTCCGCCCGCTCGCCGCCGCGCAGAGCCGCCGCATCTCCGGCGCGTTCCAGGCGTACAACGCGCTGTCGCCGCTCGTCAAGTTCTCGCACTTCACGGCCAACCAGGCCATCTTCCAGGCGCTCGACGGCGAGGACCGCGTCCACGTGATCGACCTCGACATCATGCAGGGGCTGCAGTGGCCGGGCCTCTTCCACATCCTCGCCTCCCGCCCCACCAAGCCGCGCTCGCTCCGGATCACCGGCCTCGGCGCGTCGCTCGACGTCCTCGAGGCCACCGGCCGCCGCCTCGCCGACTTCGCCGCGTCGCTCGGCTTGCCCTTCGAGTTCCGGCCCATCGAGGGGAAGATCGGGCACGTCGCCGACGCCGCCGCGCTCCTCGGCCCGCGCCACCACGGGGAGGCCACCGTTGTGCACTGGATGCACCACTGCCTCTACGACGTGACGGGCTCCGACGCCGGCACGGTGCGCCTGCTCAAGAGCCTCCGGCCGAAGCTGATCACCATCGTGGAGCAGGACCTCGGCCACAGCGGCGACTTCCTGGGCCGCTTCGTGGAGGCGCTGCACTACTACTCGGCGCTGTTCGACGCGCTGGGCGACGGCGCGGGGGCCGCCGAGGAGGAGGCGGCGGAGCGGCACGCGGTGGAGCGTCAGCTCCTCGGCGCGGAGATACGGAACATCGTCGCCGTCGGGGGCCCCAAGCGCACCGGCGAGGTGCGCGTCGAGCGGTGGGGCGACGAGCTGCGGCGAGCGGGGTTCCGGCCGGTGACCCTGGCCGGCAGCCCCGCCGCGCAGGCGAGGCTGCTTCTTGGCATGTACCCATGGAAGGGCTACACTCTCGTCGAAGAGGACGGCTGCCTCAAGTTCGGGTGGAAGGACCTGTCCCTGCTCACCGCCTCGTCGTGGGAGCCGACAGACGGCGACGCCGACGCCGACGTCGCCGTCGCCGGCGATACCCACCATGAGAGCCACGATTCTTGATCACATGATCGCAGTAGCAGCCAGGTCGATTCACCTGTCGCAGCTTTTTTTGGTCATATTCATTATCCTCTTTCTGCTAGCTACTTCATTCGATCGTTCTTCCTCCTGTGAGTAGTATTTTGGCCGATGATTAAGCTTG] [+] EMBL AK120140 [GTTTTGCCACGGAGAAGGGTCACCTGGGAAATTATTGTTTAGGCTGACGTGATGCTCCAGGGAGTCCTGTCGCGAGCTCCCGGCGCCGACGCGGCAGCGATGAAGGCGAAGCGCGCGGCCGACGACGAGGAGGAAGGCGGCGAGCGGGAGCGCGCGCGTGGGAAGCGGCTGGCTGCTGAGGGGAAGCAAGGGTTAGTGGTGGTGAGTACGGGGGAGGAGGAGGAGGCGGCGGCGGAGACGCGTGGGCTGCGGCTGCTTAGTTTGTTGCTGAGGTGTGCGGAGGCGGTGGCGATGGACCAGCTGCCGGAGGCGCGGGACCTGCTGCCGGAGATCGCCGAGCTGGCGTCGCCGTTCGGGTCGTCGCCCGAGCGCGTCGCGGCCTACTTCGGGGACGCGCTGTGCGCGCGCGTGCTGAGCTCCTACCTGGGGGCCTACTCGCCGCTGGCGCTCCGCCCGCTCGCCGCCGCGCAGAGCCGCCGCATCTCCGGCGCGTTCCAGGCGTACAACGCGCTGTCGCCGCTCGTCAAGTTCTCGCACTTCACGGCCAACCAGGCCATCTTCCAGGCGCTCGACGGCGAGGACCGCGTCCACGTGATCGACCTCGACATCATGCAGGGGCTGCAGTGGCCGGGCCTCTTCCACATCCTCGCCTCCCGCCCCACCAAGCCGCGCTCGCTCCGGATCACCGGCCTCGGCGCGTCGCTCGACGTCCTCGAGGCCACCGGCCGCCGCCTCGCCGACTTCGCCGCGTCGCTCGGCTTGCCCTTCGAGTTCCGGCCCATCGAGGGGAAGATCGGGCACGTCGCCGACGCCGCCGCGCTCCTCGGCCCGCGCCACCACGGGGAGGCCACCGTTGTGCACTGGATGCACCACTGCCTCTACGACGTGACGGGCTCCGACGCCGGCACGGTGCGCCTGCTCAAGAGCCTCCGGCCGAAGCTGATCACCATCGTGGAGCAGGACCTCGGCCACAGCGGCGACTTCCTGGGCCGCTTCGTGGAGGCGCTGCACTACTACTCGGCGCTGTTCGACGCGCTGGGCGACGGCGCGGGGGCCGCCGAGGAGGAGGCGGCGGAGCGGCACGCGGTGGAGCGTCAGCTCCTCGGCGCGGAGATACGGAACATCGTCGCCGTCGGGGGCCCCAAGCGCACCGGCGAGGTGCGCGTCGAGCGGTGGGGCGACGAGCTGCGGCGAGCGGGGTTCCGGCCGGTGACCCTGGCCGGCAGCCCCGCCGCGCAGGCGAGGCTGCTTCTTGGCATGTACCCATGGAAGGGCTACACTCTCGTCGAAGAGGACGGCTGCCTCAAGTTCGGGTGGAAGGACCTGTCCCTGCTCACCGCCTCGTCGTGGGAGCCGACAGACGGCGACGCCGACGCCGACGTCGCCGTCGCCGGCGATACCCACCATGAGAGCCACGATTCTTGATCACATGATCGCAGTAGCAGCCAGGTCGATTCACCTGTCGCAGCTTTTTTTGGTCATATTCATTATCCTCTTTCTGCTAGCTACTTCATTCGATCGTTCTTCCTCCTGTGAGTAGTATTTTGGCCGATGATTAAGCTTG] consensusID : consensus_3984#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1214 fasta sequence [TGTTGCAGTGGTTTTGCCACGGAGAAGGGTCACCGGGAAATTATTGTTTAGGCTGACGTGATGCTCCAGGGAGTCCTGTCGCGAGCTCCCGGCGCCGACGCGGCAGCGATGAAGGCGAAGCGCGCGGCCGACGACGAGGAGGAAGGCGGCGAGCGGGAGCGCGCGCGTGGGAAGCGGCTGGCTGCTGAGGGGAAGCAAGGGTTAGTGGTGGTGAGTACGGGGGAGGAGGAGGAGGCGGCGGCGGAGACGCGTGGGCTGCGGCTGCTTAGTTTGTTGCTGAGGTGTGCGGAGGCGGTGGCGATGGACCAGCTGCCGGAGGCGCGGGACCTGCTGCCGGAGATCGCCGAGCTGGCGTCGCCGTTCGGGTCGTCGCCCGAGCGCGTCGCGGCCCACCACGGGGAGGCCACCGTTGTGCACTGGATGCACCACTGCCTCTACGACGTGACGGGCTCCGACGCCGGCACGGTGCGCCTGCTCAAGAGCCTCCGGCCGAAGCTGATCACCATCGTGGAGCAGGACCTCGGCCACAGCGGCGACTTCCTGGGCCGCTTCGTGGAGGCGCTGCACTACTACTCGGCGCTGTTCGACGCGCTGGGCGACGGCGCGGGGGCCGCCGAGGAGGAGGCGGCGGAGCGGCACGCGGTGGAGCGTCAGCTCCTCGGCGCGGAGATACGGAACATCGTCGCCGTCGGGGGCCCCAAGCGCACCGGCGAGGTGCGCGTCGAGCGGTGGGGCGACGAGCTGCGGCGAGCGGGGTTCCGGCCGGTGACCCTGGCCGGCAGCCCCGCCGCGCAGGCGAGGCTGCTTCTTGGCATGTACCCATGGAAGGGCTACACTCTCGTCGAAGAGGACGGCTGCCTCAAGCTCGGGTGGAAGGACCTGTCCCTGCTCACCGCCTCGTCGTGGGAGCCGACAGACGGCGACGCCGACGCCGACGTCGCCGTCGCCGGCGATACCCACCATGAGAGCCACGATTCTTGATCACATGATCGCAGTAGCAGCCAGGTCGATTCACCTGTCGCAGCTTTTCTTGGTCATATTCATTATCCTCTTTCTGCTAGCTACTTCATTCGATCGTTCTTCCTCCTGTGAGTAGTATTTTGGCCGATGATTAAGCTTGTAATATAATCGTATAGGCTTCATCATTCGTTCCCTCTCCAGGTTGCCATGAACAACACCATTTCAATTACAAAATAGAACTCTTCTACCTCCAA] [+] EMBL AK061242 [TGTTGCAGTGGTTTTGCCACGGAGAAGGGTCACCGGGAAATTATTGTTTAGGCTGACGTGATGCTCCAGGGAGTCCTGTCGCGAGCTCCCGGCGCCGACGCGGCAGCGATGAAGGCGAAGCGCGCGGCCGACGACGAGGAGGAAGGCGGCGAGCGGGAGCGCGCGCGTGGGAAGCGGCTGGCTGCTGAGGGGAAGCAAGGGTTAGTGGTGGTGAGTACGGGGGAGGAGGAGGAGGCGGCGGCGGAGACGCGTGGGCTGCGGCTGCTTAGTTTGTTGCTGAGGTGTGCGGAGGCGGTGGCGATGGACCAGCTGCCGGAGGCGCGGGACCTGCTGCCGGAGATCGCCGAGCTGGCGTCGCCGTTCGGGTCGTCGCCCGAGCGCGTCGCGGCCCACCACGGGGAGGCCACCGTTGTGCACTGGATGCACCACTGCCTCTACGACGTGACGGGCTCCGACGCCGGCACGGTGCGCCTGCTCAAGAGCCTCCGGCCGAAGCTGATCACCATCGTGGAGCAGGACCTCGGCCACAGCGGCGACTTCCTGGGCCGCTTCGTGGAGGCGCTGCACTACTACTCGGCGCTGTTCGACGCGCTGGGCGACGGCGCGGGGGCCGCCGAGGAGGAGGCGGCGGAGCGGCACGCGGTGGAGCGTCAGCTCCTCGGCGCGGAGATACGGAACATCGTCGCCGTCGGGGGCCCCAAGCGCACCGGCGAGGTGCGCGTCGAGCGGTGGGGCGACGAGCTGCGGCGAGCGGGGTTCCGGCCGGTGACCCTGGCCGGCAGCCCCGCCGCGCAGGCGAGGCTGCTTCTTGGCATGTACCCATGGAAGGGCTACACTCTCGTCGAAGAGGACGGCTGCCTCAAGCTCGGGTGGAAGGACCTGTCCCTGCTCACCGCCTCGTCGTGGGAGCCGACAGACGGCGACGCCGACGCCGACGTCGCCGTCGCCGGCGATACCCACCATGAGAGCCACGATTCTTGATCACATGATCGCAGTAGCAGCCAGGTCGATTCACCTGTCGCAGCTTTTCTTGGTCATATTCATTATCCTCTTTCTGCTAGCTACTTCATTCGATCGTTCTTCCTCCTGTGAGTAGTATTTTGGCCGATGATTAAGCTTGTAATATAATCGTATAGGCTTCATCATTCGTTCCCTCTCCAGGTTGCCATGAACAACACCATTTCAATTACAAAATAGAACTCTTCTACCTCCAA] [+] EMBL AK059008 [ ATGGAAGGGCTACACTCTCGTCGAAGAGGACGGCTGCCTCAAGCTCGGGTGGAAGGACCTGTCCCTGCTCACCGCCTCGTCGTGGGAGCCGACAGACGGCGACGCCGACGCCGACGTCGCCGTCGCCGGCGATACCCACCATGAGAGCCACGATTCTTGATCACATGATCGCAGTAGCAGCCAGGTCGATTCACCTGTCGCAGCTTTTCTTGGTCATATTCATTATCCTCTTTCTGCTAGCTACTTCATTCGATCGTTCTTCCTCCTGTGAGTAGTATTTTGGCCGATGATTAAGCTTGTAATATAATCGTATAGGCTTCATCATTCGTTCCCTCTCCAGGTTGCCATGAACAACACCATTTCAATTACAAAATAGAACTC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3984#0 ----------GTTTTGCCACGGAGAAGGGTCACCTGGGAAATTATTGTTTAGGCTGACGT 50 consensus_3984#1 TGTTGCAGTGGTTTTGCCACGGAGAAGGGTCACC-GGGAAATTATTGTTTAGGCTGACGT 59 ************************ ************************* consensus_3984#0 GATGCTCCAGGGAGTCCTGTCGCGAGCTCCCGGCGCCGACGCGGCAGCGATGAAGGCGAA 110 consensus_3984#1 GATGCTCCAGGGAGTCCTGTCGCGAGCTCCCGGCGCCGACGCGGCAGCGATGAAGGCGAA 119 ************************************************************ consensus_3984#0 GCGCGCGGCCGACGACGAGGAGGAAGGCGGCGAGCGGGAGCGCGCGCGTGGGAAGCGGCT 170 consensus_3984#1 GCGCGCGGCCGACGACGAGGAGGAAGGCGGCGAGCGGGAGCGCGCGCGTGGGAAGCGGCT 179 ************************************************************ consensus_3984#0 GGCTGCTGAGGGGAAGCAAGGGTTAGTGGTGGTGAGTACGGGGGAGGAGGAGGAGGCGGC 230 consensus_3984#1 GGCTGCTGAGGGGAAGCAAGGGTTAGTGGTGGTGAGTACGGGGGAGGAGGAGGAGGCGGC 239 ************************************************************ consensus_3984#0 GGCGGAGACGCGTGGGCTGCGGCTGCTTAGTTTGTTGCTGAGGTGTGCGGAGGCGGTGGC 290 consensus_3984#1 GGCGGAGACGCGTGGGCTGCGGCTGCTTAGTTTGTTGCTGAGGTGTGCGGAGGCGGTGGC 299 ************************************************************ consensus_3984#0 GATGGACCAGCTGCCGGAGGCGCGGGACCTGCTGCCGGAGATCGCCGAGCTGGCGTCGCC 350 consensus_3984#1 GATGGACCAGCTGCCGGAGGCGCGGGACCTGCTGCCGGAGATCGCCGAGCTGGCGTCGCC 359 ************************************************************ consensus_3984#0 GTTCGGGTCGTCGCCCGAGCGCGTCGCGGCCTACTTCGGGGACGCGCTGTGCGCGCGCGT 410 consensus_3984#1 GTTCGGGTCGTCGCCCGAGCGCGTCGCGGCC----------------------------- 390 ******************************* consensus_3984#0 GCTGAGCTCCTACCTGGGGGCCTACTCGCCGCTGGCGCTCCGCCCGCTCGCCGCCGCGCA 470 consensus_3984#1 ------------------------------------------------------------ consensus_3984#0 GAGCCGCCGCATCTCCGGCGCGTTCCAGGCGTACAACGCGCTGTCGCCGCTCGTCAAGTT 530 consensus_3984#1 ------------------------------------------------------------ consensus_3984#0 CTCGCACTTCACGGCCAACCAGGCCATCTTCCAGGCGCTCGACGGCGAGGACCGCGTCCA 590 consensus_3984#1 ------------------------------------------------------------ consensus_3984#0 CGTGATCGACCTCGACATCATGCAGGGGCTGCAGTGGCCGGGCCTCTTCCACATCCTCGC 650 consensus_3984#1 ------------------------------------------------------------ consensus_3984#0 CTCCCGCCCCACCAAGCCGCGCTCGCTCCGGATCACCGGCCTCGGCGCGTCGCTCGACGT 710 consensus_3984#1 ------------------------------------------------------------ consensus_3984#0 CCTCGAGGCCACCGGCCGCCGCCTCGCCGACTTCGCCGCGTCGCTCGGCTTGCCCTTCGA 770 consensus_3984#1 ------------------------------------------------------------ consensus_3984#0 GTTCCGGCCCATCGAGGGGAAGATCGGGCACGTCGCCGACGCCGCCGCGCTCCTCGGCCC 830 consensus_3984#1 ------------------------------------------------------------ consensus_3984#0 GCGCCACCACGGGGAGGCCACCGTTGTGCACTGGATGCACCACTGCCTCTACGACGTGAC 890 consensus_3984#1 ----CACCACGGGGAGGCCACCGTTGTGCACTGGATGCACCACTGCCTCTACGACGTGAC 446 ******************************************************** consensus_3984#0 GGGCTCCGACGCCGGCACGGTGCGCCTGCTCAAGAGCCTCCGGCCGAAGCTGATCACCAT 950 consensus_3984#1 GGGCTCCGACGCCGGCACGGTGCGCCTGCTCAAGAGCCTCCGGCCGAAGCTGATCACCAT 506 ************************************************************ consensus_3984#0 CGTGGAGCAGGACCTCGGCCACAGCGGCGACTTCCTGGGCCGCTTCGTGGAGGCGCTGCA 1010 consensus_3984#1 CGTGGAGCAGGACCTCGGCCACAGCGGCGACTTCCTGGGCCGCTTCGTGGAGGCGCTGCA 566 ************************************************************ consensus_3984#0 CTACTACTCGGCGCTGTTCGACGCGCTGGGCGACGGCGCGGGGGCCGCCGAGGAGGAGGC 1070 consensus_3984#1 CTACTACTCGGCGCTGTTCGACGCGCTGGGCGACGGCGCGGGGGCCGCCGAGGAGGAGGC 626 ************************************************************ consensus_3984#0 GGCGGAGCGGCACGCGGTGGAGCGTCAGCTCCTCGGCGCGGAGATACGGAACATCGTCGC 1130 consensus_3984#1 GGCGGAGCGGCACGCGGTGGAGCGTCAGCTCCTCGGCGCGGAGATACGGAACATCGTCGC 686 ************************************************************ consensus_3984#0 CGTCGGGGGCCCCAAGCGCACCGGCGAGGTGCGCGTCGAGCGGTGGGGCGACGAGCTGCG 1190 consensus_3984#1 CGTCGGGGGCCCCAAGCGCACCGGCGAGGTGCGCGTCGAGCGGTGGGGCGACGAGCTGCG 746 ************************************************************ consensus_3984#0 GCGAGCGGGGTTCCGGCCGGTGACCCTGGCCGGCAGCCCCGCCGCGCAGGCGAGGCTGCT 1250 consensus_3984#1 GCGAGCGGGGTTCCGGCCGGTGACCCTGGCCGGCAGCCCCGCCGCGCAGGCGAGGCTGCT 806 ************************************************************ consensus_3984#0 TCTTGGCATGTACCCATGGAAGGGCTACACTCTCGTCGAAGAGGACGGCTGCCTCAAGTT 1310 consensus_3984#1 TCTTGGCATGTACCCATGGAAGGGCTACACTCTCGTCGAAGAGGACGGCTGCCTCAAGCT 866 ********************************************************** * consensus_3984#0 CGGGTGGAAGGACCTGTCCCTGCTCACCGCCTCGTCGTGGGAGCCGACAGACGGCGACGC 1370 consensus_3984#1 CGGGTGGAAGGACCTGTCCCTGCTCACCGCCTCGTCGTGGGAGCCGACAGACGGCGACGC 926 ************************************************************ consensus_3984#0 CGACGCCGACGTCGCCGTCGCCGGCGATACCCACCATGAGAGCCACGATTCTTGATCACA 1430 consensus_3984#1 CGACGCCGACGTCGCCGTCGCCGGCGATACCCACCATGAGAGCCACGATTCTTGATCACA 986 ************************************************************ consensus_3984#0 TGATCGCAGTAGCAGCCAGGTCGATTCACCTGTCGCAGCTTTTTTTGGTCATATTCATTA 1490 consensus_3984#1 TGATCGCAGTAGCAGCCAGGTCGATTCACCTGTCGCAGCTTTTCTTGGTCATATTCATTA 1046 ******************************************* **************** consensus_3984#0 TCCTCTTTCTGCTAGCTACTTCATTCGATCGTTCTTCCTCCTGTGAGTAGTATTTTGGCC 1550 consensus_3984#1 TCCTCTTTCTGCTAGCTACTTCATTCGATCGTTCTTCCTCCTGTGAGTAGTATTTTGGCC 1106 ************************************************************ consensus_3984#0 GATGATTAAGCTTG---------------------------------------------- 1564 consensus_3984#1 GATGATTAAGCTTGTAATATAATCGTATAGGCTTCATCATTCGTTCCCTCTCCAGGTTGC 1166 ************** consensus_3984#0 ------------------------------------------------ consensus_3984#1 CATGAACAACACCATTTCAATTACAAAATAGAACTCTTCTACCTCCAA 1214 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||