These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3991#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 641 fasta sequence [GGTCAGGCTCTACATGGCATTAAACCACCCCTGTTGGCTGAATTACTCCTGCCTGGTTCCTTATTGGAAGGTGAACGTAACAAACAGTAAGCCAAAGCTGCTCTGTTGGAGACAATAAAATCTCATCTTGTCAAGGCTCAATCCCGTATGAAATACTTTGCCGATCAACATAGCCAAGAACGCACACTTGAAGTTGGCGATATGGTCTACCTTAAAATGCAACCATATCGACATAATTCACTGGGTCTTCATCCTTCCTTGAAACTTCACTCCAGGTACTATGGGCCATTCAGAGTTCTGGAGCGCATTGGTTCAGTTGCTTACAAGCTTTTGCTACCTGCTACTAGCCAAATACATCCTGTCTTCCATGTCAGCCAGTCAAAGAAACATCTGGGCTCTCATCCAGAACATACCAAAAGCAAAAAAAAGATTGATGCTGATGGCAGGATTCTCTCTACCCCATTGGCAGTGCTCGATCGTCCCCTTATACCTAGACACAATGAACCAGTGGGTCAGTGGAAATTCATGGGGCTACCCACCAGAATCGCTGCAACTGGGAGGATGTGCGTTTATTACAAGTATTCCTCTTCACTCCAGAGGACCTGATCTAGGGGGGAAATTGTAGACTGATAAATCCACTT] [+] EMBL CA753308 [GGTCAGGCTCTACATGGCATTAAACCACCCCTGTTGGCTGAATTACTCCTGCCTGGTTCCTTATTGGAAGGTGAACGTAACAAACAGTAAGCCAAAGCTGCTCTGTTGGAGACAATAAAATCTCATCTTGTCAAGGCTCAATCCCGTATGAAATACTTTGCCGATCAACATAGCCAAGAACGCACACTTGAAGTTGGCGATATGGTCTACCTTAAAATGCAACCATATCGACATAATTCACTGGGTCTTCATCCTTCCTTGAAACTTCACTCCAGGTACTATGGGCCATTCAGAGTTCTGGAGCGCATTGGTTCAGTTGCTTACAAGCTTTTGCTACCTGCTACTAGCCAAATACATCCTGTCTTCCATGTCAGCCAGTCAAAGAAACATCTGGGCTCTCATCCAGAACATACCAAAAGCAAAAAAAAGATTGATGCTGATGGCAGGATTCTCTCTACCCCATTGGCAGTGCTCGATCGTCCCCTTATACCTAGACACAATGAACCAGTGGGTCAGTGGAAATTCATGGGGCTACCCACCAGAATCGCTGCAACTGGGAGGATGTGCGTTTATTACAAGTATTCCTCTTCACTCCAGAGGACCTGATCTAGGGGGGAAATTGTAGACTGATAAATCCACTT] consensusID : consensus_3991#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 628 fasta sequence [TGGCCCATTCAGAGTTTTGGAGCGCATTGGTTCAGTTGCTTACAAGCTTTTGTTCCCTGTTACTAGCCAAATACATCCTGTTTTCCATGTCAGCCAGTTAAAGAAACATCTGGGTTTTGGTGCTGTCCCTGAACAAGCCCTCCCTTTGATTGATGCTGAGGGCAGGATTTTTTTTCCCCCATTGGCAGTGTTCGATCGTCCCCTTATCCCTAGAAACAATGACCCAGTGGTGCAGTGGAAAATTCATTGGGTTACCTTCCCAGAATCAGTTGCAACTTGGGAGGATGTTGCGTTTATTCCCAAAGTATTTCCTTTTTTCACTCCAGGAGGACATGGTTTTTAAGGGGGGAGAATTGTGAGCCCTGAAGAAGATTCAGACTTAAAGTTCAGAGTTAAGAGATAGCTGGAATAGATTCACCGGTGGAGATTGGGAGATCCCGATTCGCGAGAAGGTTATGAAGATGGTGTGGCCCAGATTCCCCGCGACGAGTTCCAGAGGGGAAGAATTCCCGTCCTGTGGGGGTCATCGTCGTTGTCGTTTAGCTAGGGGCGTACTCAATATAAGCCCGAGCTTTTGGCTGTAACTTTTTATCAAACTTGACCCCTAATATAATTTCCCGTCTTGTTC] [-] EMBL CB631598 [TGGCCCATTCAGAGTTTTGGAGCGCATTGGTTCAGTTGCTTACAAGCTTTTGTTCCCTGTTACTAGCCAAATACATCCTGTTTTCCATGTCAGCCAGTTAAAGAAACATCTGGGTTTTGGTGCTGTCCCTGAACAAGCCCTCCCTTTGATTGATGCTGAGGGCAGGATTTTTTTTCCCCCATTGGCAGTGTTCGATCGTCCCCTTATCCCTAGAAACAATGACCCAGTGGTGCAGTGGAAAATTCATTGGGTTACCTTCCCAGAATCAGTTGCAACTTGGGAGGATGTTGCGTTTATTCCCAAAGTATTTCCTTTTTTCACTCCAGGAGGACATGGTTTTTAAGGGGGGAGAATTGTGAGCCCTGAAGAAGATTCAGACTTAAAGTTCAGAGTTAAGAGATAGCTGGAATAGATTCACCGGTGGAGATTGGGAGATCCCGATTCGCGAGAAGGTTATGAAGATGGTGTGGCCCAGATTCCCCGCGACGAGTTCCAGAGGGGAAGAATTCCCGTCCTGTGGGGGTCATCGTCGTTGTCGTTTAGCTAGGGGCGTACTCAATATAAGCCCGAGCTTTTGGCTGTAACTTTTTATCAAACTTGACCCCTAATATAATTTCCCGTCTTGTTC] consensusID : consensus_3991#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 197 fasta sequence [CCGCCCACGCGTCCGGAAGATCGTGTGGCCCAGATTCGCCGCGACGAGCTACAGAGGGGAAGAATTGCCGTACTGTGGGCGTCATCGTCGTTGTCGTTTAGCTATGGGCGTACTCAATATAAGCCCGAGCTTTTGGCTGTAACTTTTTATCAACTTGAACCCTAATATAATTTCCCCTCTTGTTCTTGCGGCCAAAA] [+] EMBL BM038745 [CCGCCCACGCGTCCGGAAGATCGTGTGGCCCAGATTCGCCGCGACGAGCTACAGAGGGGAAGAATTGCCGTACTGTGGGCGTCATCGTCGTTGTCGTTTAGCTATGGGCGTACTCAATATAAGCCCGAGCTTTTGGCTGTAACTTTTTATCAACTTGAACCCTAATATAATTTCCCCTCTTGTTCTTGCGGCCAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3991#1 TGGCCCATTCAGAGTTTTGGAGCGCATTGGTTCAGTTGCTTACAAGCTTTTGTTCCCTGT 60 consensus_3991#2 ------------------------------------------------------------ consensus_3991#0 ------------------------------------------------------------ consensus_3991#1 TACTAGCCAAATACATCCTGTTTTCCATGTCAGCCAGTTAAAGAAACATCTGGGTTTTGG 120 consensus_3991#2 ------------------------------------------------------------ consensus_3991#0 ----GGTCAGGCTCTACATGGCATTAAACCACCCCTGTTGGCTGAATTACTCCTGCCTGG 56 consensus_3991#1 TGCTGTCCCTGAACAAGCCCTCCCTTTGATTGATGCTGAGGGCAGGATTTTTTTTCCCCC 180 consensus_3991#2 ------------------------------------------------------------ consensus_3991#0 TTCCTTATTGGAAGGTGAACGTAACAAACAGTAAGCCAAAGCTGCTCTGTTGGAGACAAT 116 consensus_3991#1 ATTGGCAGTGTTCGATCGTCCCCTTATCCCTAGAAACAATGACCCAGTGGTGCAGTGGAA 240 consensus_3991#2 ------------------------------------------------------------ consensus_3991#0 AAAATCTCATCTTGTCAAGGCTCAATCCCGTATGAAATACTTTGCCGATCAACATAGCCA 176 consensus_3991#1 AATTCATTGGGTTACCTTCCCAGAATCAGTTGCAACTTGGGAGGATGTTGCGTTTATTCC 300 consensus_3991#2 ------------------------------------------------------------ consensus_3991#0 AGAACGCACACTTGAAGTTGGCGATATGGTCTACCTTAAAATGCAACCATATCGACATAA 236 consensus_3991#1 CAAAGTATTTCCTTTTTTCACTCCAGGAGGACATGGTTTTTAAGGGGGGAGAATTGTGAG 360 consensus_3991#2 ------------------------------------------------------------ consensus_3991#0 TTCACTGGGTCTTCATCCTTCCTTGAAACTTCACTCCAGGTACTATGGGCCATTCAGAGT 296 consensus_3991#1 CCCTGAAGAAGATTCAGACTTAAAGTTCAGAGTTAAGAGATAGCTGGAATAGATTCACCG 420 consensus_3991#2 ------------------------------------------------------------ consensus_3991#0 TCTGGAGCGCATTGGTTCAGTTGCTTACAAGCTTTTGCTACCTGCTACTAGCCAAATACA 356 consensus_3991#1 GTGGAGATTGGGAGATCCCGATTCGCGAGAAGGTTATGAAGATGGTGTGGCCCAGATTCC 480 consensus_3991#2 ----------------------CCGCCCACGCGTCCGGAAGATCGTGTGGCCCAGATTCG 38 consensus_3991#0 TCCTGTCTTCCATGTCAGCCAGTCAAAGAAACATCTGGGCTCTCATCCAGAACATACCAA 416 * * * * * * ** * consensus_3991#1 CCGCGACGA-------GTTCCAGAGGGGAAGAATTCCCGTCCTG---TGGGGGTCATCG- 529 consensus_3991#2 CCGCGACGA-------GCTACAGAGGGGAAGAATTGCCGTACTG---TGGGCGTCATCG- 87 consensus_3991#0 AAGCAAAAAAAAGATTGATGCTGATGGCAGGATTCTCTCTACCCCATTGGCAGTGCTCGA 476 ** * * * * * ** ** * ** * * * * *** ** *** consensus_3991#1 TCGTTGTCGTTTAGCTAGGGGC---GTAC-------TCAATATAAGCCC---GAGCTTTT 576 consensus_3991#2 TCGTTGTCGTTTAGCTATGGGC---GTAC-------TCAATATAAGCCC---GAGCTTTT 134 consensus_3991#0 TCGTCCCCTTATACCTAGACACAATGAACCAGTGGGTCAGTGGAAATTCATGGGGCTACC 536 **** * * ** *** * * ** *** * ** * * *** consensus_3991#1 GGCTGTAACTTTT-----TATCAAACTTGACCCCTAATATAATTTCCCGTCTT-GTTC-- 628 consensus_3991#2 GGCTGTAACTTTT-----TATCAA-CTTGAACCCTAATATAATTTCCCCTCTT-GTTCTT 187 consensus_3991#0 CACCAGAATCGCTGCAACTGGGAGGATGTGCGTTTATTACAAGTATTCCTCTTCACTCCA 596 * ** * * * * ** ** ** * * **** ** consensus_3991#1 --------------------------------------------- consensus_3991#2 GCGGCCAAAA----------------------------------- 197 consensus_3991#0 GAGGACCTGATCTAGGGGGGAAATTGTAGACTGATAAATCCACTT 641 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||