Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 4013 cluster # 4013       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4013#0 length = 2708 sequences # 3  

consensusID : consensus_4013#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 2708
fasta sequence
                              [AAAATTATTCCCTTCGACCCAACCTGTTCTTACGTTCGCCTTCAACTCCGCGATCTCCAGTGGCCAATTAGGCTTGCGTCTCTTCCTCAGATTTGGCTGCAGAATTTGAAGCGGTCTTCCACCTCTCAATCCCATCGCCTCCCTCCCCTCCCCTTCCGCCGCTTCATCTGAATCCCCAAGGATCTCGTCCACGCTTCTGGCCCGCGCCTCTTCCCAGTTTTGGTTGCTCGAATTTCAGCCGAGCTGGTGTTCCGAGCGATCGATTGGAGAGCAAAATTGGATTTTGATTTGCGAGCTGAGCTGTTTGAGTAAAAGCGAGTGAAAATGATGGAGCAGGATGGAAGGTACTGAGGTTGGGGTGATTCAGTAAATTATTTCGTTGGCTGGCAATGCAGTGCTTCTGCCCTGGGGCGAAGATGAACAGGATCGAAAAGGCAGCCCGGTCATCGGAGATCAGCAAGCACTCATCTACGAATGGCGAGATCAAGCAGCACATCAACAATATTGATACTGAAGAAGCTGACTTTCCCCTCCAGGAGGGAGGTTCGCTTAAAAGAGGCAAGAGCATTGCTAGGAAAGGTAGAAAACCAACATGGACACGCTGAAGAAGCACTACGAGTGTTCAGTGGAATAAATATGCCTGCATTAATTCCTAAGGTGAAAATGTCTATCATTAGAAAAGTGGACCTGCAAAAGGCCCAGTTACATTCCAGCTCTCCTTCATTGCCTTTTCATGCTGCTATTCTGCTACTGGAGATTATATATTTCAAAGCTACAGCACTTCGCAATCTTGGAAAAATCGAAGAAGCTACAAAAGAGTGCAGTAGCATATTGGATGTTGTGGAATCTGCACTACCTGAGGGTTTGCCAGACATCTTTGGTGATGACTGCAACCTGAAACCAACACTATGCAGAGCTGTTGAATTGCTTCCAGAGCTATATAAATTAGGGGGTTTTCATTTTGAAGCTATCTCTTCATACAGGAGGGCTCTTTGGAGTAACTGGAATCTTGATGAAAAGACAATTGGTAGGATACAAAAGGAATTTGCGGTTCTTCTCCTATATAGTGGCTGTGAAACTTGCTCTCCGAATCTTCTATCTCAGTTGGATGGCTCATTTGTACCTCGGAACAATTTGGAAGAAGCCATTCTTCTTTTAATGCTTCTATTGAGGAAGTTCAATCTTAAGAGGCTCGAGAGGGACCCAACCGTGATGCATCATCTGACATTTGCATTGTCCATGTCAGGGCAGTTAAAACCACTAGCTATTCAGTTTGAAGAATTATTACCTGGAGTATTACACAACAGAGAGTGGTCGTACAATGTTGCTTTGTGCTACCTAGCAGAAGAAGATGATCTAATCGCCCTGAATCTGCTCAAAAGGATATTGGTGTCTGGAGAAGATTCCAATAATCTCAAAGAACTTCTCCTAGTTTCCAAAATTTGTTGCGAGAACAGTGTACAAGGTGAAGAAGGTACTTTGTATGCACGCAGAGCCCTAACTAATCTACATGGAGGTTGCGATCAAATAGAGGTTACTGCTGACCTTTTGCTTGGCATTTCCCTTTCCAATCAAGCTAGATTTGCTACGACCAACACAAAGAGAGCCTCTCAGCAGCGTGAAGCGTTGGAAGTGCTCAGTATTTCTGAAAAGAAGATGCATGGCATAGATTTTAGGGTACTATACAATCTCAGCCTTGAAAATGCCAAGCAGAGGAAATTGGATACAGCAGCTCGTTATGCAAAGAAACTTTTGAAATTAGAGGCTGGATCAGAACTCAAGACTTGGCTCCTTATGGCTCGAATAATGAGTGCCCAAAGACGGTTTGAAGACGCTGAGTCCATTGTAAATGCCGCGCTAGATCAGACTGGAAAATGGTTTCAAGGAGATTTATTGCAAATTAAAGCCAAAATGCAGGCTGCACAGGGTAAATTTAAGAAAGCAGTTGAAACATATACCCAGCTTCTTGCTGTCATCCAGCTAAGGACAAAAAGTTTCAATGCTGGGATTTCTGTGTTAAAGGGCTCTAAGGATGATAGAAGTCTGGAAATAGAGACGTGGTATGATCTGGTCCTTCTGTATATAAGAATGTCACAGTGGAGGGATGCAGAACTTTCCATATCAAAAATAAAAGCTATCAGCCCATACTCTGCCTTGGCTTTTCATGCTACAGGAAAGCTACATGAAGCAAAAGGTTTTCTAAAGGAAGCTCTTCGAGCATACTCAACAGCATTGGACCTTGAACCTAGACATGTACCAAGTTTGATATCAACAGCTATTGTTCTTCGACGGCTTGGCGAGAGACCCTTGCCTGCTGTAAGGTGTTTCCTAACTGATGCATTGCAATTAGACAGAACAAATCATATTGCGTGGTTGAACCTTGGCTTACTATACGAAGATGAAGGGGGCAGTTCAGCACTTGAAGCTGCTGAATGTTTTCAGACTGCTGCTCTTCTTGAAGAAACTAACCCAGTAGAACCTTTTAGATGACACAGATTGTACTCAAATTGAATGTTTTAGGGAGATTGCTATAGTACAAAGTACTTTCACAACACAGTTTCTAAACATTTTTTCCCCTTCTGGTGCATTCTTTTTGTGCTTCACCATCCCAACATTTAGGAGAGGAGAGTGTGTAAAGTGCATTAATTACAAACACGTACACGTGTACAATTGTTACCCCATATTTTTGACATAATATTGAGATTATA]

[+] EMBL AK069986             [AAAATTATTCCCTTCGACCCAACCTGTTCTTACGTTCGCCTTCAACTCCGCGATCTCCAGTGGCCAATTAGGCTTGCGTCTCTTCCTCAGATTTGGCTGCAGAATTTGAAGCGGTCTTCCACCTCTCAATCCCATCGCCTCCCTCCCCTCCCCTTCCGCCGCTTCATCTGAATCCCCAAGGATCTCGTCCACGCTTCTGGCCCGCGCCTCTTCCCAGTTTTGGTTGCTCGAATTTCAGCCGAGCTGGTGTTCCGAGCGATCGATTGGAGAGCAAAATTGGATTTTGATTTGCGAGCTGAGCTGTTTGAGTAAAAGCGAGTGAAAATGATGGAGCAGGATGGAAGGTACTGAGGTTGGGGTGATTCAGTAAATTATTTCGTTGGCTGGCAATGCAGTGCTTCTGCCCTGGGGCGAAGATGAACAGGATCGAAAAGGCAGCCCGGTCATCGGAGATCAGCAAGCACTCATCTACGAATGGCGAGATCAAGCAGCACATCAACAATATTGATACTGAAGAAGCTGACTTTCCCCTCCAGGAGGGAGGTTCGCTTAAAAGAGGCAAGAGCATTGCTAGGAAAGGTAGAAAACCAACATGGACACGCTGAAGAAGCACTACGAGTGTTCAGTGGAATAAATATGCCTGCATTAATTCCTAAGGTGAAAATGTCTATCATTAGAAAAGTGGACCTGCAAAAGGCCCAGTTACATTCCAGCTCTCCTTCATTGCCTTTTCATGCTGCTATTCTGCTACTGGAGATTATATATTTCAAAGCTACAGCACTTCGCAATCTTGGAAAAATCGAAGAAGCTACAAAAGAGTGCAGTAGCATATTGGATGTTGTGGAATCTGCACTACCTGAGGGTTTGCCAGACATCTTTGGTGATGACTGCAACCTGAAACCAACACTATGCAGAGCTGTTGAATTGCTTCCAGAGCTATATAAATTAGGGGGTTTTCATTTTGAAGCTATCTCTTCATACAGGAGGGCTCTTTGGAGTAACTGGAATCTTGATGAAAAGACAATTGGTAGGATACAAAAGGAATTTGCGGTTCTTCTCCTATATAGTGGCTGTGAAACTTGCTCTCCGAATCTTCTATCTCAGTTGGATGGCTCATTTGTACCTCGGAACAATTTGGAAGAAGCCATTCTTCTTTTAATGCTTCTATTGAGGAAGTTCAATCTTAAGAGGCTCGAGAGGGACCCAACCGTGATGCATCATCTGACATTTGCATTGTCCATGTCAGGGCAGTTAAAACCACTAGCTATTCAGTTTGAAGAATTATTACCTGGAGTATTACACAACAGAGAGTGGTCGTACAATGTTGCTTTGTGCTACCTAGCAGAAGAAGATGATCTAATCGCCCTGAATCTGCTCAAAAGGATATTGGTGTCTGGAGAAGATTCCAATAATCTCAAAGAACTTCTCCTAGTTTCCAAAATTTGTTGCGAGAACAGTGTACAAGGTGAAGAAGGTACTTTGTATGCACGCAGAGCCCTAACTAATCTACATGGAGGTTGCGATCAAATAGAGGTTACTGCTGACCTTTTGCTTGGCATTTCCCTTTCCAATCAAGCTAGATTTGCTACGACCAACACAAAGAGAGCCTCTCAGCAGCGTGAAGCGTTGGAAGTGCTCAGTATTTCTGAAAAGAAGATGCATGGCATAGATTTTAGGGTACTATACAATCTCAGCCTTGAAAATGCCAAGCAGAGGAAATTGGATACAGCAGCTCGTTATGCAAAGAAACTTTTGAAATTAGAGGCTGGATCAGAACTCAAGACTTGGCTCCTTATGGCTCGAATAATGAGTGCCCAAAGACGGTTTGAAGACGCTGAGTCCATTGTAAATGCCGCGCTAGATCAGACTGGAAAATGGTTTCAAGGAGATTTATTGCAAATTAAAGCCAAAATGCAGGCTGCACAGGGTAAATTTAAGAAAGCAGTTGAAACATATACCCAGCTTCTTGCTGTCATCCAGCTAAGGACAAAAAGTTTCAATGCTGGGATTTCTGTGTTAAAGGGCTCTAAGGATGATAGAAGTCTGGAAATAGAGACGTGGTATGATCTGGTCCTTCTGTATATAAGAATGTCACAGTGGAGGGATGCAGAACTTTCCATATCAAAAATAAAAGCTATCAGCCCATACTCTGCCTTGGCTTTTCATGCTACAGGAAAGCTACATGAAGCAAAAGGTTTTCTAAAGGAAGCTCTTCGAGCATACTCAACAGCATTGGACCTTGAACCTAGACATGTACCAAGTTTGATATCAACAGCTATTGTTCTTCGACGGCTTGGCGAGAGACCCTTGCCTGCTGTAAGGTGTTTCCTAACTGATGCATTGCAATTAGACAGAACAAATCATATTGCGTGGTTGAACCTTGGCTTACTATACGAAGATGAAGGGGGCAGTTCAGCACTTGAAGCTGCTGAATGTTTTCAGACTGCTGCTCTTCTTGAAGAAACTAACCCAGTAGAACCTTTTAGATGACACAGATTGTACTCAAATTGAATGTTTTAGGGAGATTGCTATAGTACAAAGTACTTTCACAACACAGTTTCTAAACATTTTTTCCCCTTCTGGTGCATTCTTTTTGTGCTTCACCATCCCAACATTTAGGAGAGGAGAGTGTGTAAAGTGCATTAATTACAAACACGTACACGTGTACAATTGTTACCCCATATTTTTGACATAATATTGAGA     ]
[+] EMBL CB641801             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ATTCCACCTCTCCTTCATTGCCTTTTCATGCTGCTATTCTGCTACTGGAGATTATATATTTCAAAGCTACAGCACTTCGCAATCTTGGAAAAATCGAAGAAGCTACAAAAGAGTGCAGTAGCATATTGGATGTTGTGGAATCTGCACTACCTGAGGGTTTGCCAGACATCTTTGGTGATGACTGCAACCTGAAACCAACACTATGCAGAGCTGTTGAATTGCTTCCAGAGCTATATAAATTAGGGGGTTTTCATTTTGAAGCTATCTCTTCATACAGGAGGGCTCTTTGGAGTAACTGGAATCTTGATGAAAAGACAATTGGTAGGATACAAAAGGAATTTGCGGTTCTTCTCCTATATAGTGGCTGTGAAACTTGCTCTCCGAATCTTCTATCTCAGTTGGATGGCTCATTTGTACCTCGGAACAATTTGGAAGAAGCCATTCTTCTTTTAATGCTTCTATTGAGGAAGTTCAATCTTAAGAGGCTCGAGAGGGACCCAACCGTGATGCATCATCTGACATTTGCATTGTCCATGTCAGGGCAGTTAAAACCACTAGCTATTCAGTTTGAAGAATTATTACCTGGAGTATTACACAACAGAGAGTGGTCGTACAATGTTGCTTTGTGCTACCTAGCAGAAGAAGATGATCTAATCGCCCTGAATCTGCTCAAAAGGATATTGGTGTCTGGAGAAGATTCCAATAATCTCAAAGAACTTCTCCTAGTTTCCAAAATTTGTTGCGAGAACAGTGTACAAGGTGAAGAAGGTACTTTGTATGCACGCAGAGCCCTAACTAATCTACATGGAGGTTGCGATCAAATAGAGGGTACTGCTGACCTTTTGCTTGGCATTTCCCCTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CB641802             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  CCAAAATGCAGGCTGCACAGGGTAAATTTAAGAAAGCAGTTGAAACATATACCCAGCTTCTTGCTGTCATCCAGCTAAGGACAAAAAGTTTCAATGCTGGGATTTCTGTGTTAAAGGGCTCTAAGGATGATAGAAGTCTGGAAATAGAGACGTGGTATGATCTGGTCCTTCTGTATATAAGAATGTCACAGTGGAGGGATGCAGAACTTTCCATATCAAAAATAAAAGCTATCAGCCCATACTCTGCCTTGGCTTTTCATGCTACAGGAAAGCTACATGAAGCAAAAGGTTTTCTAAAGGAAGCTCTTCGAGCATACTCAACAGCATTGGACCTTGAACCTAGACATGTACCAAGTTTGATATCAACAGCTATTGTTCTTCGACGGCTTGGCGAGAGACCCTTGCCTGCTGTAAGGTGTTTCCTAACTGATGCATTGCAATTAGACAGAACAAATCATATTGCGTGGTTGAATCTTGGCTTACTATACGAAGATGAAGGGGGCAGTTCAGCACTTGAAGCTGCTGAATGTTTTCAGACTGCTGCTCTTCTTGAAGAAACTAACCCAGTAGAACCTTTTAGATGACACAGATTGTACTCAAATTGAATGTTTTAGGGAGATTGCTATAGTACAAAGTACTTTCACAACACAGTTTCTAAACATTTTTTCCCCTTCTGGTGCATTCTTTTTGTGCTTCACCATCCCAACATTTAGGAGAGGAGAGTGTGTAAAGTGCATTAATTACAAACACGTACACGTGTACAATTGTTACCCCATATTTTTGACATAATATTGAGATTATA]


>consensus_4013#0 AAAATTATTCCCTTCGACCCAACCTGTTCTTACGTTCGCCTTCAACTCCGCGATCTCCAG TGGCCAATTAGGCTTGCGTCTCTTCCTCAGATTTGGCTGCAGAATTTGAAGCGGTCTTCC ACCTCTCAATCCCATCGCCTCCCTCCCCTCCCCTTCCGCCGCTTCATCTGAATCCCCAAG GATCTCGTCCACGCTTCTGGCCCGCGCCTCTTCCCAGTTTTGGTTGCTCGAATTTCAGCC GAGCTGGTGTTCCGAGCGATCGATTGGAGAGCAAAATTGGATTTTGATTTGCGAGCTGAG CTGTTTGAGTAAAAGCGAGTGAAAATGATGGAGCAGGATGGAAGGTACTGAGGTTGGGGT GATTCAGTAAATTATTTCGTTGGCTGGCAATGCAGTGCTTCTGCCCTGGGGCGAAGATGA ACAGGATCGAAAAGGCAGCCCGGTCATCGGAGATCAGCAAGCACTCATCTACGAATGGCG AGATCAAGCAGCACATCAACAATATTGATACTGAAGAAGCTGACTTTCCCCTCCAGGAGG GAGGTTCGCTTAAAAGAGGCAAGAGCATTGCTAGGAAAGGTAGAAAACCAACATGGACAC GCTGAAGAAGCACTACGAGTGTTCAGTGGAATAAATATGCCTGCATTAATTCCTAAGGTG AAAATGTCTATCATTAGAAAAGTGGACCTGCAAAAGGCCCAGTTACATTCCAGCTCTCCT TCATTGCCTTTTCATGCTGCTATTCTGCTACTGGAGATTATATATTTCAAAGCTACAGCA CTTCGCAATCTTGGAAAAATCGAAGAAGCTACAAAAGAGTGCAGTAGCATATTGGATGTT GTGGAATCTGCACTACCTGAGGGTTTGCCAGACATCTTTGGTGATGACTGCAACCTGAAA CCAACACTATGCAGAGCTGTTGAATTGCTTCCAGAGCTATATAAATTAGGGGGTTTTCAT TTTGAAGCTATCTCTTCATACAGGAGGGCTCTTTGGAGTAACTGGAATCTTGATGAAAAG ACAATTGGTAGGATACAAAAGGAATTTGCGGTTCTTCTCCTATATAGTGGCTGTGAAACT TGCTCTCCGAATCTTCTATCTCAGTTGGATGGCTCATTTGTACCTCGGAACAATTTGGAA GAAGCCATTCTTCTTTTAATGCTTCTATTGAGGAAGTTCAATCTTAAGAGGCTCGAGAGG GACCCAACCGTGATGCATCATCTGACATTTGCATTGTCCATGTCAGGGCAGTTAAAACCA CTAGCTATTCAGTTTGAAGAATTATTACCTGGAGTATTACACAACAGAGAGTGGTCGTAC AATGTTGCTTTGTGCTACCTAGCAGAAGAAGATGATCTAATCGCCCTGAATCTGCTCAAA AGGATATTGGTGTCTGGAGAAGATTCCAATAATCTCAAAGAACTTCTCCTAGTTTCCAAA ATTTGTTGCGAGAACAGTGTACAAGGTGAAGAAGGTACTTTGTATGCACGCAGAGCCCTA ACTAATCTACATGGAGGTTGCGATCAAATAGAGGTTACTGCTGACCTTTTGCTTGGCATT TCCCTTTCCAATCAAGCTAGATTTGCTACGACCAACACAAAGAGAGCCTCTCAGCAGCGT GAAGCGTTGGAAGTGCTCAGTATTTCTGAAAAGAAGATGCATGGCATAGATTTTAGGGTA CTATACAATCTCAGCCTTGAAAATGCCAAGCAGAGGAAATTGGATACAGCAGCTCGTTAT GCAAAGAAACTTTTGAAATTAGAGGCTGGATCAGAACTCAAGACTTGGCTCCTTATGGCT CGAATAATGAGTGCCCAAAGACGGTTTGAAGACGCTGAGTCCATTGTAAATGCCGCGCTA GATCAGACTGGAAAATGGTTTCAAGGAGATTTATTGCAAATTAAAGCCAAAATGCAGGCT GCACAGGGTAAATTTAAGAAAGCAGTTGAAACATATACCCAGCTTCTTGCTGTCATCCAG CTAAGGACAAAAAGTTTCAATGCTGGGATTTCTGTGTTAAAGGGCTCTAAGGATGATAGA AGTCTGGAAATAGAGACGTGGTATGATCTGGTCCTTCTGTATATAAGAATGTCACAGTGG AGGGATGCAGAACTTTCCATATCAAAAATAAAAGCTATCAGCCCATACTCTGCCTTGGCT TTTCATGCTACAGGAAAGCTACATGAAGCAAAAGGTTTTCTAAAGGAAGCTCTTCGAGCA TACTCAACAGCATTGGACCTTGAACCTAGACATGTACCAAGTTTGATATCAACAGCTATT GTTCTTCGACGGCTTGGCGAGAGACCCTTGCCTGCTGTAAGGTGTTTCCTAACTGATGCA TTGCAATTAGACAGAACAAATCATATTGCGTGGTTGAACCTTGGCTTACTATACGAAGAT GAAGGGGGCAGTTCAGCACTTGAAGCTGCTGAATGTTTTCAGACTGCTGCTCTTCTTGAA GAAACTAACCCAGTAGAACCTTTTAGATGACACAGATTGTACTCAAATTGAATGTTTTAG GGAGATTGCTATAGTACAAAGTACTTTCACAACACAGTTTCTAAACATTTTTTCCCCTTC TGGTGCATTCTTTTTGTGCTTCACCATCCCAACATTTAGGAGAGGAGAGTGTGTAAAGTG CATTAATTACAAACACGTACACGTGTACAATTGTTACCCCATATTTTTGACATAATATTG AGATTATA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)