These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4047#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 682 fasta sequence [ACCATCGATCGATTTTCCNCCCTCGCCGGAATTTAAAAAAGCGACNCTGCAGGGATCGAGATCGAGATCCAGAAAGGTTGGCAATGGCGGCGCGCGTGGCGGTTGTCCTCCTGCTACTGTTCGGCCTCGCCGCCGTGGCGGTNACGGCGGCGAGGATCATGCCCGACGACGACTGCGGCGACACGGCGAACGCCGCCGGCGCCGCCGGCGTGGGGGAAGCCAAGACGGCGTTCGGCGGGANCGACGGCCGCGGGGGGCTNTTCGGCGGGTACACCGGCCCGCTCGGCGGCGGCGCCGCCGGGTTCGGCCCCTTCGGCGGGTTCGGCGCCGGCGGCGGGCCGTTCGGCGGGTTCGGCGGCGGAGTTGGCCTCGGCGGCGGCGGCGGAGGATTCCGGCCGTAAGACGATGACTCGTAGGACGACGTGTGCGCATGCGTATAGTAGTATAGTGCAATTAATGTGATTCCACGTGTATAACGTTGTGGGTTAATTGTGCCACGTCAGATATATGTACTAATGTACGGTNANATGTATCTACCGTACGCTGGAGTTTGTACGGCTATCGTTGATTANAGATTTCTCTTGTGTTGCTTAAGTGTTTGTGTGTGTGTTCATTGAGTTGTTTTGTGTTGTAATTTGCTAAACTTTCAAGTGCTTATCTATGAAAAAAAAAAAAAAAAAAA] [+] EMBL AU094336 [ACCATCGATCGATTTTCCNCCCTCGCCGGAATTTAAAAAAGCGACNCTGCAGGGATCGAGATCGAGATCCAGAAAGGTTGGCAATGGCGGCGCGCGTGGCGGTTGTCCTCCTGCTACTGTTCGGCCTCGCCGCCGTGGCGGTNACGGCGGCGAGGATCATGCCCGACGACGACTGCGGCGACACGGCGAACGCCGCCGGCGCCGCCGGCGTGGGGGAAGCCAAGACGGCGTTCGGCGGGANCGACGGCCGCGGGGGGCTNTTCGGCGGGTACACCGGCCCGCTCGGCGGCGGCGCCGCCGGGTTCGGCCCCTTCGGCGGGTTCGGCGCCGGCGGCGGGCCGTTCGGCGGGTTCGGCGGCGGAGTTGGCCTCGGCGGCGGCGGCGGAGGATTCCGGCCGTAAGACGATGACTCGTAGGACGACGTGTGCGCATGCGTATAGTAGTATAGTGCAATTAATGTGATTCCACGTGTATAACGTTGTGGGTTAATTGTGCCACGTCAGATATATGTACTAATGTACGGTNANATGTATCTACCGTACGCTGGAGTTTGTACGGCTATCGTTGATTANAGATTTCTCTTGTGTTGCTTAAGTGTTTGTGTGTGTGTTCATTGAGTTGTTTTGTGTTGTAATTTGCTAAACTTTCAAGTGCTTATCTATGAAAAAAAAAAAAAAAAAAA] consensusID : consensus_4047#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 488 fasta sequence [CGATCTCCACCTCGCCGGAGTTGAGAGAGACGACGCTGCAGGGATCGAGATCGAGATCAGAGAGGTTGGCAATGGCGGCGCGCGTGGCGGTTGTCCTCCTGCTACTGTTCGGCCTCGCCGCCGTGGCGGTGACGGCGGCGAGGATCATGCCCGACGACGACTGCGGCGACACGGCGAACGCCGCCGGCGCCGCCGGCGTGGGGGAAGCCAAGACGGCGTTCGGCGGGAGCGACGGCCGCGGGGGGCTCTTCGGCGCCGGCGGCGGGCCGTTCGGCGGGTTCGGCGGCGGAGTTGGCCTCGGCGGCGGCGGCGGAGGATTCCGGCCGTAAGACGATGACTCGTAGGACGACGTGTGCGCATGCGTATAGTAGTATAGTGCAATTAATGTGATTCCACGTGTATAACGTTGTGGGTTAATTGTGCCACGTCAGATATATGTACTAATGTACGGTGAGATGTATCTACCGTACGCTGGAGTTTGTACGGCT] [+] EMBL AK062637 [CGATCTCCACCTCGCCGGAGTTGAGAGAGACGACGCTGCAGGGATCGAGATCGAGATCAGAGAGGTTGGCAATGGCGGCGCGCGTGGCGGTTGTCCTCCTGCTACTGTTCGGCCTCGCCGCCGTGGCGGTGACGGCGGCGAGGATCATGCCCGACGACGACTGCGGCGACACGGCGAACGCCGCCGGCGCCGCCGGCGTGGGGGAAGCCAAGACGGCGTTCGGCGGGAGCGACGGCCGCGGGGGGCTCTTCGGCGCCGGCGGCGGGCCGTTCGGCGGGTTCGGCGGCGGAGTTGGCCTCGGCGGCGGCGGCGGAGGATTCCGGCCGTAAGACGATGACTCGTAGGACGACGTGTGCGCATGCGTATAGTAGTATAGTGCAATTAATGTGATTCCACGTGTATAACGTTGTGGGTTAATTGTGCCACGTCAGATATATGTACTAATGTACGGTGAGATGTATCTACCGTACGCTGGAGTTTGTACGGCT] consensusID : consensus_4047#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 438 fasta sequence [GCTCCCGCCATTAATCGCTTCCTCCAACTCCCCATCGTCTCTCCTCCTCCCCTTTAAACCCCCTCTCCTCTCGCCTCCCGCTCCACCACCATCGATCGATCTCCACCTCGCCGGAGTTGAGAGAGACGACGCTGCAGGGATCGAGATCGAGATCAGAGAGGTTGGCAATGGCGGCGCGCGTGGCGGTTGTCCTCCTGCTACTGTTCGGTCTCGCGCCGTGGCGGTGACGGCGGCGAGGATCATGCCCGACGACGACTGCGGCGACACGGCGAACGNNCCGGGCCGCCGTTGNGGGGGAAGCCAAGACGGCGTTCGGCGGGAGCGACGGCCGCGGGGGGCTTTTTCGGCGGGTACAACGGCCCGTTCGGCGGCGGCGCNGAGGTTTCGGCCCCTTTCGGCGGGGTTNGGCGCCGGCGGGGTGCCCTTTGGGGGGTTTCG] [+] EMBL C73517 [GCTCCCGCCATTAATCGCTTCCTCCAACTCCCCATCGTCTCTCCTCCTCCCCTTTAAACCCCCTCTCCTCTCGCCTCCCGCTCCACCACCATCGATCGATCTCCACCTCGCCGGAGTTGAGAGAGACGACGCTGCAGGGATCGAGATCGAGATCAGAGAGGTTGGCAATGGCGGCGCGCGTGGCGGTTGTCCTCCTGCTACTGTTCGGTCTCGCGCCGTGGCGGTGACGGCGGCGAGGATCATGCCCGACGACGACTGCGGCGACACGGCGAACGNNCCGGGCCGCCGTTGNGGGGGAAGCCAAGACGGCGTTCGGCGGGAGCGACGGCCGCGGGGGGCTTTTTCGGCGGGTACAACGGCCCGTTCGGCGGCGGCGCNGAGGTTTCGGCCCCTTTCGGCGGGGTTNGGCGCCGGCGGGGTGCCCTTTGGGGGGTTTCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4047#0 ------------------------------------------------------------ consensus_4047#1 ------------------------------------------------------------ consensus_4047#2 GCTCCCGCCATTAATCGCTTCCTCCAACTCCCCATCGTCTCTCCTCCTCCCCTTTAAACC 60 consensus_4047#0 ---------------------------ACCATCGATCGATTTTCCNCCCTCGCCGGAATT 33 consensus_4047#1 ------------------------------------CGATCT--CCACCTCGCCGGAGTT 22 consensus_4047#2 CCCTCTCCTCTCGCCTCCCGCTCCACCACCATCGATCGATCT--CCACCTCGCCGGAGTT 118 **** * * ********** ** consensus_4047#0 TAAAAAAGCGACNCTGCAGGGATCGAGATCGAGATCCAGAAAGGTTGGCAATGGCGGCGC 93 consensus_4047#1 GAGAGAGACGACGCTGCAGGGATCGAGATCGAGATC-AGAGAGGTTGGCAATGGCGGCGC 81 consensus_4047#2 GAGAGAGACGACGCTGCAGGGATCGAGATCGAGATC-AGAGAGGTTGGCAATGGCGGCGC 177 * * * **** *********************** *** ******************* consensus_4047#0 GCGTGGCGGTTGTCCTCCTGCTACTGTTCGGCCTCGCCGCCGTGGCGGTNACGGCGGCGA 153 consensus_4047#1 GCGTGGCGGTTGTCCTCCTGCTACTGTTCGGCCTCGCCGCCGTGGCGGTGACGGCGGCGA 141 consensus_4047#2 GCGTGGCGGTTGTCCTCCTGCTACTGTTCGGTCTCGC-GCCGTGGCGGTGACGGCGGCGA 236 ******************************* ***** *********** ********** consensus_4047#0 GGATCATGCCCGACGACGACTGCGGCGACACGGCGAACGCCGCCGGCGCCGCCGGCGTGG 213 consensus_4047#1 GGATCATGCCCGACGACGACTGCGGCGACACGGCGAACGCCGCCGGCGCCGCCGGCGTGG 201 consensus_4047#2 GGATCATGCCCGACGACGACTGCGGCGACACGGCGAACGNN-CCGG-GCCGCCGTTGNGG 294 *************************************** **** ******* * ** consensus_4047#0 GGGAAGCCAAGACGGCGTTCGGCGGGANCGACGGCCGCGGGGGGCTNTT-CGGCGGGTAC 272 consensus_4047#1 GGGAAGCCAAGACGGCGTTCGGCGGGAGCGACGGCCGCGGGGGGCTCTT-CGGCG----- 255 consensus_4047#2 GGGAAGCCAAGACGGCGTTCGGCGGGAGCGACGGCCGCGGGGGGCTTTTTCGGCG----- 349 *************************** ****************** ** ***** consensus_4047#0 ACCGGCCCGCTCGGCGGCGGCGCCGCCGGGTTCGGCCCCTTCGGCGGGTTCGGCGCCGGC 332 consensus_4047#1 -------------------------------------------------------CCGGC 260 consensus_4047#2 -------------------------------------------------------GGTAC 354 * consensus_4047#0 GGCGGGCCGTTCGGCGGGTTCGGCGGCGGAGTTGGCCTCGGCGGCGGCGGCGGAGGATTC 392 consensus_4047#1 GGCGGGCCGTTCGGCGGGTTCGGCGGCGGAGTTGGCCTCGGCGGCGGCGGCGGAGGATTC 320 consensus_4047#2 AACGGCCCGTTCGGCGG---CGGCGCNGAGGTTTCGGCCCCTTTCGGCGGGGTTNGGCGC 411 *** *********** ***** * *** * ****** * * * consensus_4047#0 CGGCCGTAAGACGATGACTCGTAGGACGACGTGTGCGCATGCGTATAGTAGTATAGTGCA 452 consensus_4047#1 CGGCCGTAAGACGATGACTCGTAGGACGACGTGTGCGCATGCGTATAGTAGTATAGTGCA 380 consensus_4047#2 CGGCGG------GGTGCCCTTTGGGGGGTTTCG--------------------------- 438 **** * * ** * * ** * * consensus_4047#0 ATTAATGTGATTCCACGTGTATAACGTTGTGGGTTAATTGTGCCACGTCAGATATATGTA 512 consensus_4047#1 ATTAATGTGATTCCACGTGTATAACGTTGTGGGTTAATTGTGCCACGTCAGATATATGTA 440 consensus_4047#2 ------------------------------------------------------------ consensus_4047#0 CTAATGTACGGTNANATGTATCTACCGTACGCTGGAGTTTGTACGGCTATCGTTGATTAN 572 consensus_4047#1 CTAATGTACGGTGAGATGTATCTACCGTACGCTGGAGTTTGTACGGCT------------ 488 consensus_4047#2 ------------------------------------------------------------ consensus_4047#0 AGATTTCTCTTGTGTTGCTTAAGTGTTTGTGTGTGTGTTCATTGAGTTGTTTTGTGTTGT 632 consensus_4047#1 ------------------------------------------------------------ consensus_4047#2 ------------------------------------------------------------ consensus_4047#0 AATTTGCTAAACTTTCAAGTGCTTATCTATGAAAAAAAAAAAAAAAAAAA 682 consensus_4047#1 -------------------------------------------------- consensus_4047#2 -------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||