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Oryza sativa
cluster # 4047 cluster # 4047       Sequences # 3       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4047#0 length = 682 sequences # 1  
consensus_4047#1 length = 488 sequences # 1  
consensus_4047#2 length = 438 sequences # 1  

consensusID : consensus_4047#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 682
fasta sequence
                              [ACCATCGATCGATTTTCCNCCCTCGCCGGAATTTAAAAAAGCGACNCTGCAGGGATCGAGATCGAGATCCAGAAAGGTTGGCAATGGCGGCGCGCGTGGCGGTTGTCCTCCTGCTACTGTTCGGCCTCGCCGCCGTGGCGGTNACGGCGGCGAGGATCATGCCCGACGACGACTGCGGCGACACGGCGAACGCCGCCGGCGCCGCCGGCGTGGGGGAAGCCAAGACGGCGTTCGGCGGGANCGACGGCCGCGGGGGGCTNTTCGGCGGGTACACCGGCCCGCTCGGCGGCGGCGCCGCCGGGTTCGGCCCCTTCGGCGGGTTCGGCGCCGGCGGCGGGCCGTTCGGCGGGTTCGGCGGCGGAGTTGGCCTCGGCGGCGGCGGCGGAGGATTCCGGCCGTAAGACGATGACTCGTAGGACGACGTGTGCGCATGCGTATAGTAGTATAGTGCAATTAATGTGATTCCACGTGTATAACGTTGTGGGTTAATTGTGCCACGTCAGATATATGTACTAATGTACGGTNANATGTATCTACCGTACGCTGGAGTTTGTACGGCTATCGTTGATTANAGATTTCTCTTGTGTTGCTTAAGTGTTTGTGTGTGTGTTCATTGAGTTGTTTTGTGTTGTAATTTGCTAAACTTTCAAGTGCTTATCTATGAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU094336             [ACCATCGATCGATTTTCCNCCCTCGCCGGAATTTAAAAAAGCGACNCTGCAGGGATCGAGATCGAGATCCAGAAAGGTTGGCAATGGCGGCGCGCGTGGCGGTTGTCCTCCTGCTACTGTTCGGCCTCGCCGCCGTGGCGGTNACGGCGGCGAGGATCATGCCCGACGACGACTGCGGCGACACGGCGAACGCCGCCGGCGCCGCCGGCGTGGGGGAAGCCAAGACGGCGTTCGGCGGGANCGACGGCCGCGGGGGGCTNTTCGGCGGGTACACCGGCCCGCTCGGCGGCGGCGCCGCCGGGTTCGGCCCCTTCGGCGGGTTCGGCGCCGGCGGCGGGCCGTTCGGCGGGTTCGGCGGCGGAGTTGGCCTCGGCGGCGGCGGCGGAGGATTCCGGCCGTAAGACGATGACTCGTAGGACGACGTGTGCGCATGCGTATAGTAGTATAGTGCAATTAATGTGATTCCACGTGTATAACGTTGTGGGTTAATTGTGCCACGTCAGATATATGTACTAATGTACGGTNANATGTATCTACCGTACGCTGGAGTTTGTACGGCTATCGTTGATTANAGATTTCTCTTGTGTTGCTTAAGTGTTTGTGTGTGTGTTCATTGAGTTGTTTTGTGTTGTAATTTGCTAAACTTTCAAGTGCTTATCTATGAAAAAAAAAAAAAAAAAAA]


>consensus_4047#0 ACCATCGATCGATTTTCCNCCCTCGCCGGAATTTAAAAAAGCGACNCTGCAGGGATCGAG ATCGAGATCCAGAAAGGTTGGCAATGGCGGCGCGCGTGGCGGTTGTCCTCCTGCTACTGT TCGGCCTCGCCGCCGTGGCGGTNACGGCGGCGAGGATCATGCCCGACGACGACTGCGGCG ACACGGCGAACGCCGCCGGCGCCGCCGGCGTGGGGGAAGCCAAGACGGCGTTCGGCGGGA NCGACGGCCGCGGGGGGCTNTTCGGCGGGTACACCGGCCCGCTCGGCGGCGGCGCCGCCG GGTTCGGCCCCTTCGGCGGGTTCGGCGCCGGCGGCGGGCCGTTCGGCGGGTTCGGCGGCG GAGTTGGCCTCGGCGGCGGCGGCGGAGGATTCCGGCCGTAAGACGATGACTCGTAGGACG ACGTGTGCGCATGCGTATAGTAGTATAGTGCAATTAATGTGATTCCACGTGTATAACGTT GTGGGTTAATTGTGCCACGTCAGATATATGTACTAATGTACGGTNANATGTATCTACCGT ACGCTGGAGTTTGTACGGCTATCGTTGATTANAGATTTCTCTTGTGTTGCTTAAGTGTTT GTGTGTGTGTTCATTGAGTTGTTTTGTGTTGTAATTTGCTAAACTTTCAAGTGCTTATCT ATGAAAAAAAAAAAAAAAAAAA



consensusID : consensus_4047#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 488
fasta sequence
                              [CGATCTCCACCTCGCCGGAGTTGAGAGAGACGACGCTGCAGGGATCGAGATCGAGATCAGAGAGGTTGGCAATGGCGGCGCGCGTGGCGGTTGTCCTCCTGCTACTGTTCGGCCTCGCCGCCGTGGCGGTGACGGCGGCGAGGATCATGCCCGACGACGACTGCGGCGACACGGCGAACGCCGCCGGCGCCGCCGGCGTGGGGGAAGCCAAGACGGCGTTCGGCGGGAGCGACGGCCGCGGGGGGCTCTTCGGCGCCGGCGGCGGGCCGTTCGGCGGGTTCGGCGGCGGAGTTGGCCTCGGCGGCGGCGGCGGAGGATTCCGGCCGTAAGACGATGACTCGTAGGACGACGTGTGCGCATGCGTATAGTAGTATAGTGCAATTAATGTGATTCCACGTGTATAACGTTGTGGGTTAATTGTGCCACGTCAGATATATGTACTAATGTACGGTGAGATGTATCTACCGTACGCTGGAGTTTGTACGGCT]

[+] EMBL AK062637             [CGATCTCCACCTCGCCGGAGTTGAGAGAGACGACGCTGCAGGGATCGAGATCGAGATCAGAGAGGTTGGCAATGGCGGCGCGCGTGGCGGTTGTCCTCCTGCTACTGTTCGGCCTCGCCGCCGTGGCGGTGACGGCGGCGAGGATCATGCCCGACGACGACTGCGGCGACACGGCGAACGCCGCCGGCGCCGCCGGCGTGGGGGAAGCCAAGACGGCGTTCGGCGGGAGCGACGGCCGCGGGGGGCTCTTCGGCGCCGGCGGCGGGCCGTTCGGCGGGTTCGGCGGCGGAGTTGGCCTCGGCGGCGGCGGCGGAGGATTCCGGCCGTAAGACGATGACTCGTAGGACGACGTGTGCGCATGCGTATAGTAGTATAGTGCAATTAATGTGATTCCACGTGTATAACGTTGTGGGTTAATTGTGCCACGTCAGATATATGTACTAATGTACGGTGAGATGTATCTACCGTACGCTGGAGTTTGTACGGCT]


>consensus_4047#1 CGATCTCCACCTCGCCGGAGTTGAGAGAGACGACGCTGCAGGGATCGAGATCGAGATCAG AGAGGTTGGCAATGGCGGCGCGCGTGGCGGTTGTCCTCCTGCTACTGTTCGGCCTCGCCG CCGTGGCGGTGACGGCGGCGAGGATCATGCCCGACGACGACTGCGGCGACACGGCGAACG CCGCCGGCGCCGCCGGCGTGGGGGAAGCCAAGACGGCGTTCGGCGGGAGCGACGGCCGCG GGGGGCTCTTCGGCGCCGGCGGCGGGCCGTTCGGCGGGTTCGGCGGCGGAGTTGGCCTCG GCGGCGGCGGCGGAGGATTCCGGCCGTAAGACGATGACTCGTAGGACGACGTGTGCGCAT GCGTATAGTAGTATAGTGCAATTAATGTGATTCCACGTGTATAACGTTGTGGGTTAATTG TGCCACGTCAGATATATGTACTAATGTACGGTGAGATGTATCTACCGTACGCTGGAGTTT GTACGGCT



consensusID : consensus_4047#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 438
fasta sequence
                              [GCTCCCGCCATTAATCGCTTCCTCCAACTCCCCATCGTCTCTCCTCCTCCCCTTTAAACCCCCTCTCCTCTCGCCTCCCGCTCCACCACCATCGATCGATCTCCACCTCGCCGGAGTTGAGAGAGACGACGCTGCAGGGATCGAGATCGAGATCAGAGAGGTTGGCAATGGCGGCGCGCGTGGCGGTTGTCCTCCTGCTACTGTTCGGTCTCGCGCCGTGGCGGTGACGGCGGCGAGGATCATGCCCGACGACGACTGCGGCGACACGGCGAACGNNCCGGGCCGCCGTTGNGGGGGAAGCCAAGACGGCGTTCGGCGGGAGCGACGGCCGCGGGGGGCTTTTTCGGCGGGTACAACGGCCCGTTCGGCGGCGGCGCNGAGGTTTCGGCCCCTTTCGGCGGGGTTNGGCGCCGGCGGGGTGCCCTTTGGGGGGTTTCG]

[+] EMBL C73517               [GCTCCCGCCATTAATCGCTTCCTCCAACTCCCCATCGTCTCTCCTCCTCCCCTTTAAACCCCCTCTCCTCTCGCCTCCCGCTCCACCACCATCGATCGATCTCCACCTCGCCGGAGTTGAGAGAGACGACGCTGCAGGGATCGAGATCGAGATCAGAGAGGTTGGCAATGGCGGCGCGCGTGGCGGTTGTCCTCCTGCTACTGTTCGGTCTCGCGCCGTGGCGGTGACGGCGGCGAGGATCATGCCCGACGACGACTGCGGCGACACGGCGAACGNNCCGGGCCGCCGTTGNGGGGGAAGCCAAGACGGCGTTCGGCGGGAGCGACGGCCGCGGGGGGCTTTTTCGGCGGGTACAACGGCCCGTTCGGCGGCGGCGCNGAGGTTTCGGCCCCTTTCGGCGGGGTTNGGCGCCGGCGGGGTGCCCTTTGGGGGGTTTCG]


>consensus_4047#2 GCTCCCGCCATTAATCGCTTCCTCCAACTCCCCATCGTCTCTCCTCCTCCCCTTTAAACC CCCTCTCCTCTCGCCTCCCGCTCCACCACCATCGATCGATCTCCACCTCGCCGGAGTTGA GAGAGACGACGCTGCAGGGATCGAGATCGAGATCAGAGAGGTTGGCAATGGCGGCGCGCG TGGCGGTTGTCCTCCTGCTACTGTTCGGTCTCGCGCCGTGGCGGTGACGGCGGCGAGGAT CATGCCCGACGACGACTGCGGCGACACGGCGAACGNNCCGGGCCGCCGTTGNGGGGGAAG CCAAGACGGCGTTCGGCGGGAGCGACGGCCGCGGGGGGCTTTTTCGGCGGGTACAACGGC CCGTTCGGCGGCGGCGCNGAGGTTTCGGCCCCTTTCGGCGGGGTTNGGCGCCGGCGGGGT GCCCTTTGGGGGGTTTCG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4047#0      ------------------------------------------------------------
consensus_4047#1      ------------------------------------------------------------
consensus_4047#2      GCTCCCGCCATTAATCGCTTCCTCCAACTCCCCATCGTCTCTCCTCCTCCCCTTTAAACC 60
                                                                                  

consensus_4047#0      ---------------------------ACCATCGATCGATTTTCCNCCCTCGCCGGAATT 33
consensus_4047#1      ------------------------------------CGATCT--CCACCTCGCCGGAGTT 22
consensus_4047#2      CCCTCTCCTCTCGCCTCCCGCTCCACCACCATCGATCGATCT--CCACCTCGCCGGAGTT 118
                                                          **** *  *  ********** **

consensus_4047#0      TAAAAAAGCGACNCTGCAGGGATCGAGATCGAGATCCAGAAAGGTTGGCAATGGCGGCGC 93
consensus_4047#1      GAGAGAGACGACGCTGCAGGGATCGAGATCGAGATC-AGAGAGGTTGGCAATGGCGGCGC 81
consensus_4047#2      GAGAGAGACGACGCTGCAGGGATCGAGATCGAGATC-AGAGAGGTTGGCAATGGCGGCGC 177
                       * * *  **** *********************** *** *******************

consensus_4047#0      GCGTGGCGGTTGTCCTCCTGCTACTGTTCGGCCTCGCCGCCGTGGCGGTNACGGCGGCGA 153
consensus_4047#1      GCGTGGCGGTTGTCCTCCTGCTACTGTTCGGCCTCGCCGCCGTGGCGGTGACGGCGGCGA 141
consensus_4047#2      GCGTGGCGGTTGTCCTCCTGCTACTGTTCGGTCTCGC-GCCGTGGCGGTGACGGCGGCGA 236
                      ******************************* ***** *********** **********

consensus_4047#0      GGATCATGCCCGACGACGACTGCGGCGACACGGCGAACGCCGCCGGCGCCGCCGGCGTGG 213
consensus_4047#1      GGATCATGCCCGACGACGACTGCGGCGACACGGCGAACGCCGCCGGCGCCGCCGGCGTGG 201
consensus_4047#2      GGATCATGCCCGACGACGACTGCGGCGACACGGCGAACGNN-CCGG-GCCGCCGTTGNGG 294
                      ***************************************   **** *******  * **

consensus_4047#0      GGGAAGCCAAGACGGCGTTCGGCGGGANCGACGGCCGCGGGGGGCTNTT-CGGCGGGTAC 272
consensus_4047#1      GGGAAGCCAAGACGGCGTTCGGCGGGAGCGACGGCCGCGGGGGGCTCTT-CGGCG----- 255
consensus_4047#2      GGGAAGCCAAGACGGCGTTCGGCGGGAGCGACGGCCGCGGGGGGCTTTTTCGGCG----- 349
                      *************************** ****************** ** *****     

consensus_4047#0      ACCGGCCCGCTCGGCGGCGGCGCCGCCGGGTTCGGCCCCTTCGGCGGGTTCGGCGCCGGC 332
consensus_4047#1      -------------------------------------------------------CCGGC 260
consensus_4047#2      -------------------------------------------------------GGTAC 354
                                                                                 *

consensus_4047#0      GGCGGGCCGTTCGGCGGGTTCGGCGGCGGAGTTGGCCTCGGCGGCGGCGGCGGAGGATTC 392
consensus_4047#1      GGCGGGCCGTTCGGCGGGTTCGGCGGCGGAGTTGGCCTCGGCGGCGGCGGCGGAGGATTC 320
consensus_4047#2      AACGGCCCGTTCGGCGG---CGGCGCNGAGGTTTCGGCCCCTTTCGGCGGGGTTNGGCGC 411
                        *** ***********   *****  *  ***     *     ****** *   *   *

consensus_4047#0      CGGCCGTAAGACGATGACTCGTAGGACGACGTGTGCGCATGCGTATAGTAGTATAGTGCA 452
consensus_4047#1      CGGCCGTAAGACGATGACTCGTAGGACGACGTGTGCGCATGCGTATAGTAGTATAGTGCA 380
consensus_4047#2      CGGCGG------GGTGCCCTTTGGGGGGTTTCG--------------------------- 438
                      **** *      * ** *   * **  *    *                           

consensus_4047#0      ATTAATGTGATTCCACGTGTATAACGTTGTGGGTTAATTGTGCCACGTCAGATATATGTA 512
consensus_4047#1      ATTAATGTGATTCCACGTGTATAACGTTGTGGGTTAATTGTGCCACGTCAGATATATGTA 440
consensus_4047#2      ------------------------------------------------------------
                                                                                  

consensus_4047#0      CTAATGTACGGTNANATGTATCTACCGTACGCTGGAGTTTGTACGGCTATCGTTGATTAN 572
consensus_4047#1      CTAATGTACGGTGAGATGTATCTACCGTACGCTGGAGTTTGTACGGCT------------ 488
consensus_4047#2      ------------------------------------------------------------
                                                                                  

consensus_4047#0      AGATTTCTCTTGTGTTGCTTAAGTGTTTGTGTGTGTGTTCATTGAGTTGTTTTGTGTTGT 632
consensus_4047#1      ------------------------------------------------------------
consensus_4047#2      ------------------------------------------------------------
                                                                                  

consensus_4047#0      AATTTGCTAAACTTTCAAGTGCTTATCTATGAAAAAAAAAAAAAAAAAAA 682
consensus_4047#1      --------------------------------------------------
consensus_4047#2      --------------------------------------------------
                                                                        




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)