These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4102#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 765 fasta sequence [CTTAGTATAGTAATAAGCCATGGAGGGAGAACCAGTATAGTAGTAGCAATACAAATCTTTACTGCGCGAGGTTTTCAAAACCTTAAATTGTCTCAAAATAACTCTAGCATGCAAAGAGCACGTTAACAAGTACTCTAGGAAAGGAAGCGACTTTAGAGAACCATTACTAAGCTTCGTCTCTTCTGAAAGGAAGCGACTCTAGAGAATCAGTAATAAGCTTCATCTCTTCCCAAAAGGGTATCCTATCAGGATCTTTGAAATCAACCCGCACATTTACCTTCAAAAAATTGATTATCGCTTGCATTGAAGTCTTCAAGAGCTTGGCAACAAAGAATTCAGAAGTAAGAATAGCCCGGGATTTCTTTCCATGATGACCCTATCGACTTTAACTTGTGCCTTCAATTCCTTCTCATGGGTGTACATCCCACTTATACGTAGGACATAATCAACTCTGCTCTTCTTATCAAATTTAGGCATGCTCTTATCAACTCGGTAGCCATCCATCAACTCAATTAACCCGTCATAGTCATCTTTACCCCAAGGGACAATACACAAATCTTTACATTCCTGAATCTTCGATCGGAATGATGCACTGATCATGGCCAGTGGAACTTCAGAAATGAGAAGGAACTTCCTTTTATCATAATCCCAGAAGAAAGGATGCCTTCTGATCTTTTCCTTGATAGAATCTAACTGTCCACTACGTAACAGACAATGTAGCACAATGAATCATGAATTTATCTCTTTAGACAAAGTTATTATACT] [+] EMBL CB633356 [CTTAGTATAGTAATAAGCCATGGAGGGAGAACCAGTATAGTAGTAGCAATACAAATCTTTACTGCGCGAGGTTTTCAAAACCTTAAATTGTCTCAAAATAACTCTAGCATGCAAAGAGCACGTTAACAAGTACTCTAGGAAAGGAAGCGACTTTAGAGAACCATTACTAAGCTTCGTCTCTTCTGAAAGGAAGCGACTCTAGAGAATCAGTAATAAGCTTCATCTCTTCCCAAAAGGGTATCCTATCAGGATCTTTGAAATCAACCCGCACATTTACCTTCAAAAAATTGATTATCGCTTGCATTGAAGTCTTCAAGAGCTTGGCAACAAAGAATTCAGAAGTAAGAATAGCCCGGGATTTCTTTCCATGATGACCCTATCGACTTTAACTTGTGCCTTCAATTCCTTCTCATGGGTGTACATCCCACTTATACGTAGGACATAATCAACTCTGCTCTTCTTATCAAATTTAGGCATGCTCTTATCAACTCGGTAGCCATCCATCAACTCAATTAACCCGTCATAGTCATCTTTACCCCAAGGGACAATACACAAATCTTTACATTCCTGAATCTTCGATCGGAATGATGCACTGATCATGGCCAGTGGAACTTCAGAAATGAGAAGGAACTTCCTTTTATCATAATCCCAGAAGAAAGGATGCCTTCTGATCTTTTCCTTGATAGAATCTAACTGTCCACTACGTAACAGACAATGTAGCACAATGAATCATGAATTTATCTCTTTAGACAAAGTTATTATACT] [+] EMBL CA763163 [ TATAGTAGAGGCAATACAAATCTTTACTGCGCGAGGTTTTCAAAACCTTAAATTGTCTCCTGCTAACTCTAGCATGCAAGGAGCACGTTAACAAGTACTCTAGGAAAGGAAGCGACTTTAGAGAACCATTACTAAGCTTCGTCTCTTCTGAAAGGAAGCGACTCTGGAGAATCAGTAATAAGCTTCATCTTTTCCCAAAAGGGTATCCTATCAGGATCTTTGAAATCAACCCGCACATTTACCTTCAAAAAATTGATTATCGCTTGCATTGAAGTCTTCAAGAGCTTGGCAACAAAGAATTCAGAAGTAAGAATAGCCCGGGATTTCTTTCCATGATGACCCTATCGACTTTAACTTGGGCCTTCAATTCCTTCTCATGGGTGTACATCCCACTTATACGTAGGACATAATCAACTCTGCTCTTCTTATCAAATTTAGGCATGCTCTTATCAACTCGGTAGCCATCCATCAACTCAATTAACCCGTCATAGTCATCTTTACCCCAAGGGACAATACACAAATCTTTACATTCCTGAATCTTCGATCGGAATGATGCACTGATCATGGCCAGTGGAACTTCAGAAATGAGAAGGAACTTCCTTTTATCATAATCCCGGAAG AAGGATGCCTTCTGATCT ] consensusID : consensus_4102#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 695 fasta sequence [TTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAAAGGAACTCTCAAAATCCTAAACCCCCACTTCACAAGATAGCAAACCAACAAATTATCCACCTAACATATTTACCCCATACTCAAACACTACCGTTGCCTAGGCAAAATAGTCACCAAACATCCCCACAAATCTCTGCACAGGGTTGCATCCAATTATCCCATCCCCTTCAAAGCACAAATAGATGGCTGGGTTCTGGGTTTCCCCCTGCTGAGCAAGTACTCAAAGAAAAACATTCCTAAAAAATGAGGCAGGACAGCTACATGTTCTCAGCATTGTCAAGACACTGATCTAAAGCTCCCTGTCCACCTTCTCCTCACCACCTCCCCGTCTCTTTGCACTCTTTAATCCAAAATAATTGCATGCCTGCAAAACAACCTTCAAAATTGATTATCGCTTGCATTGAAGTCTTCAAGAGCTTGGCAACAAAGAATTCAAAAGTAAGAATAGCCCGGGATTTCTTTCCATGATGACCCTATCGACTTTAACTTGTGCCTTCAATTCCTTCTCATGGGGGCACATCCCACTCACACGTAGGACATAATCAACTCTGCTCTTCTTATCAAATTTAGGCATGCTCTTATCAACTCGGGAGCCATCCATCAACTCAATTAACCCGTCATAGTCATCTTTACCCCAAGGGACAATACAC] [+] EMBL CA763162 [TTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAAAGGAACTCTCAAAATCCTAAACCCCCACTTCACAAGATAGCAAACCAACAAATTATCCACCTAACATATTTACCCCATACTCAAACACTACCGTTGCCTAGGCAAAATAGTCACCAAACATCCCCACAAATCTCTGCACAGGGTTGCATCCAATTATCCCATCCCCTTCAAAGCACAAATAGATGGCTGGGTTCTGGGTTTCCCCCTGCTGAGCAAGTACTCAAAGAAAAACATTCCTAAAAAATGAGGCAGGACAGCTACATGTTCTCAGCATTGTCAAGACACTGATCTAAAGCTCCCTGTCCACCTTCTCCTCACCACCTCCCCGTCTCTTTGCACTCTTTAATCCAAAATAATTGCATGCCTGCAAAACAACCTTCAAAATTGATTATCGCTTGCATTGAAGTCTTCAAGAGCTTGGCAACAAAGAATTCAAAAGTAAGAATAGCCCGGGATTTCTTTCCATGATGACCCTATCGACTTTAACTTGTGCCTTCAATTCCTTCTCATGGGGGCACATCCCACTCACACGTAGGACATAATCAACTCTGCTCTTCTTATCAAATTTAGGCATGCTCTTATCAACTCGGGAGCCATCCATCAACTCAATTAACCCGTCATAGTCATCTTTACCCCAAGGGACAATACAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4102#0 ------------------------------------------------------------ consensus_4102#1 TTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAAAGGAACTCTCAAAAT 60 consensus_4102#0 -----------------------------------------------------CTTAGT- 6 consensus_4102#1 CCTAAACCCCCACTTCACAAGATAGCAAACCAACAAATTATCCACCTAACATATTTACCC 120 *** consensus_4102#0 -ATAGTAATAAGCCATGGAGGGAGAACCAGTATAGT-----AGTAGCAATACAAATCTTT 60 consensus_4102#1 CATACTCAAACACTACCGTTGCCTAGGCAAAATAGTCACCAAACATCCCCACAAATCTCT 180 *** * * * * * * * * ** ***** * * * ******** * consensus_4102#0 ACTGCGCGAGGTTTTCAAAACCTTAAATTGTCTCAAAATAACTCTAGCATGCAAAGAGCA 120 consensus_4102#1 GCACAGGGTTGCATCCAATTATCCCATCCCCTTCAAAGCACAAATAGATGGCTGGGTTCT 240 * * * * * *** * ***** * *** ** * * consensus_4102#0 CGTT------------AACAAGTACTCTAGGAAAGGAAGC----GACTTTAGAGAACCAT 164 consensus_4102#1 GGGTTTCCCCCTGCTGAGCAAGTACTCAAAGAAAAACATTCCTAAAAAATGAGGCAGGAC 300 * * * ********* * **** * * * * * * consensus_4102#0 TACTAAGCTTCGTCTCTTCTGAAAGGAAGCGACTCTAGAGAATCAGTAATAAGCTTCATC 224 consensus_4102#1 AGCTACATGTTCTCAGCATTGTCAAGACACTGATCTAAAGC-TCCCTGTCCACCTTCTCC 359 *** * ** ** * ** * **** ** ** * * **** * consensus_4102#0 TCTTCCCAAAAGGGTATCCTATCAGGATCT--TTGAAATCAA-------CCCGCACATTT 275 consensus_4102#1 TCACCACCTCCCCGTCTCTTTGCACTCTTTAATCCAAAATAATTGCATGCCTGCAAAACA 419 ** * * ** ** * ** * * * *** ** ** *** * consensus_4102#0 ACCTTCAAAAAATTGATTATCGCTTGCATTGAAGTCTTCAAGAGCTTGGCAACAAAGAAT 335 consensus_4102#1 ACCTTCAAA--ATTGATTATCGCTTGCATTGAAGTCTTCAAGAGCTTGGCAACAAAGAAT 477 ********* ************************************************* consensus_4102#0 TCAGAAGTAAGAATAGCCCGGGATTTCTTTCCATGATGACCCTATCGACTTTAACTTGTG 395 consensus_4102#1 TCAAAAGTAAGAATAGCCCGGGATTTCTTTCCATGATGACCCTATCGACTTTAACTTGTG 537 *** ******************************************************** consensus_4102#0 CCTTCAATTCCTTCTCATGGGTGTACATCCCACTTATACGTAGGACATAATCAACTCTGC 455 consensus_4102#1 CCTTCAATTCCTTCTCATGGGGGCACATCCCACTCACACGTAGGACATAATCAACTCTGC 597 ********************* * ********** * *********************** consensus_4102#0 TCTTCTTATCAAATTTAGGCATGCTCTTATCAACTCGGTAGCCATCCATCAACTCAATTA 515 consensus_4102#1 TCTTCTTATCAAATTTAGGCATGCTCTTATCAACTCGGGAGCCATCCATCAACTCAATTA 657 ************************************** ********************* consensus_4102#0 ACCCGTCATAGTCATCTTTACCCCAAGGGACAATACACAAATCTTTACATTCCTGAATCT 575 consensus_4102#1 ACCCGTCATAGTCATCTTTACCCCAAGGGACAATACAC---------------------- 695 ************************************** consensus_4102#0 TCGATCGGAATGATGCACTGATCATGGCCAGTGGAACTTCAGAAATGAGAAGGAACTTCC 635 consensus_4102#1 ------------------------------------------------------------ consensus_4102#0 TTTTATCATAATCCCAGAAGAAAGGATGCCTTCTGATCTTTTCCTTGATAGAATCTAACT 695 consensus_4102#1 ------------------------------------------------------------ consensus_4102#0 GTCCACTACGTAACAGACAATGTAGCACAATGAATCATGAATTTATCTCTTTAGACAAAG 755 consensus_4102#1 ------------------------------------------------------------ consensus_4102#0 TTATTATACT 765 consensus_4102#1 ---------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||