These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4127#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 561 fasta sequence [TTTTTTTTTTTTTTTTTTATTTAGCAAGCTTAAGAGTTGGAAATGACCAACATCGCCGTAATGATAAGATGAGATAATTCTGAAATTAAACTTCAAATGCAGTTGATAGTGAGTGATACTGTCATGGCTATTATGTGTGTATGTGCATAAACCAATATCAATGGCCATTATGTGTGTATGTGCATACCCCAATATCAATGGCTAATATGTGTGTACGTCAATATATACTTGTTTAATTTTATTCCCTCCCACCGAAGAATACATCAGTCAGAAAACTAAATGAATTCCCTAGTTAATGTTTCTCTTATTCAAGACTCGATCTATATGTTTCTCCAACTCTTTTTTTTTTTGGACAACCTGCAAGGTGCACAAATTATTATGCGGATGTGTGGAGAAAAAGTTGTTATCTGCATATGTTCCAGTAATTTAGATAGCAGATCTAGTCTTTTGTCAAGCTAGATAGCATATAATAGGAAAGTACATGTACTCCTCCAAATTGAAGCAGCTAATGGTTCTATTTACTAAAAGAGTTTCCTGTATCGGCACTATTGCACAGTATTT] [+] EMBL CF304384 [TTTTTTTTTTTTTTTTTTATTTAGCAAGCTTAAGAGTTGGAAATGACCAACATCGCCGTAATGATAAGATGAGATAATTCTGAAATTAAACTTCAAATGCAGTTGATAGTGAGTGATACTGTCATGGCTATTATGTGTGTATGTGCATAAACCAATATCAATGGCCATTATGTGTGTATGTGCATACCCCAATATCAATGGCTAATATGTGTGTACGTCAATATATACTTGTTTAATTTTATTCCCTCCCACCGAAGAATACATCAGTCAGAAAACTAAATGAATTCCCTAGTTAATGTTTCTCTTATTCAAGACTCGATCTATATGTTTCTCCAACTCTTTTTTTTTTTGGACAACCTGCAAGGTGCACAAATTATTATGCGGATGTGTGGAGAAAAAGTTGTTATCTGCATATGTTCCAGTAATTTAGATAGCAGATCTAGTCTTTTGTCAAGCTAGATAGCATATAATAGGAAAGTACATGTACTCCTCCAAATTGAAGCAGCTAATGGTTCTATTTACTAAAAGAGTTTCCTGTATCGGCACTATTGCACAGTATTT] [+] EMBL CF303321 [TTTTTTTTTTTTTTTTTTATTTAGCAAGCTTAAGAGTTGGAAATGACCAACATCGCCGTAATGATAAGATGAGATAATTCTGAAATTAAACTTCAAATGCAGTTGATAGTGAGTGATACTGTCATGGCTATTATGTGTGTATGTGCATAAACCAATATCAATGGCCATTATGTGTGTATGTGCATACCCCAATATCAATGGCTAATATGTGTGTACGTCAATATATACTTGTTTAATTTTATTCCCTCCCACCGAAGAATACATCAGTCAGAAAACTAAATGAATTCCCTAGTTAATGTTTCTCTTATTCAAGACTCGATCTATATGTTTCTCCAACTCTTTTTTTTTTTGGACAACCTGCAAGGTGCACAAATTATTATGCGGATGTGTGGAGAAAAAGTTGTTATCTGCATATGTTCCAGTAATTTAGATAGCAGATCTAGTCTTTTGTCAAGCTAGATAGCATATAATAGGAAAGTACATGTACTCCTCCAAATTGAAGCAGCTAATGGTTCTATTTACTAAAAGAGTTTCCTGTATCGGCACTATTGCAC ] consensusID : consensus_4127#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 376 fasta sequence [TTTTTTTTTTAGCAAGCTTAAGAGTTGGGAATGACAAAATCGGCGTAANTGATAAGATGAGATAATTCTGAAATTAAATTCAAATGGAGTTGATAGTGAAGTGATACTGGATGGGTATTATGTTGTGTATGTGCATAAACAATATCAAGTGGCATTCATGTGTGTATGTGCATACCCCAATATCAAGGGGTAATATGTGTGTACGTCAATATATACTTGTTTAATTTTATTCCCTCCCACCGAAGAATACATCAGTCAGAAAACTAAATGAATTCCCTAGTTAAGGTTTCTCTTATTCAAGACTCGATCTATATGTTTCTCCAACTCTTTTTTTTTTTTTTGGGACAACCTGGNAGGGTGCACAAATTATTATGCG] [-] EMBL BM037984 [TTTTTTTTTTAGCAAGCTTAAGAGTTGGGAATGACAAAATCGGCGTAANTGATAAGATGAGATAATTCTGAAATTAAATTCAAATGGAGTTGATAGTGAAGTGATACTGGATGGGTATTATGTTGTGTATGTGCATAAACAATATCAAGTGGCATTCATGTGTGTATGTGCATACCCCAATATCAAGGGGTAATATGTGTGTACGTCAATATATACTTGTTTAATTTTATTCCCTCCCACCGAAGAATACATCAGTCAGAAAACTAAATGAATTCCCTAGTTAAGGTTTCTCTTATTCAAGACTCGATCTATATGTTTCTCCAACTCTTTTTTTTTTTTTTGGGACAACCTGGNAGGGTGCACAAATTATTATGCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4127#0 TTTTTTTTTTTTTTTTTTATTTAGCAAGCTTAAGAGTTGGAAATGACCAACATCGCCGTA 60 consensus_4127#1 ------------TTTTTTTTTTAGCAAGCTTAAGAGTTGGGAATGAC-AAAATCGGCGTA 47 ****** ********************* ****** ** **** **** consensus_4127#0 AT-GATAAGATGAGATAATTCTGAAATTAAACTTCAAATGCAGTTGATAGTGA-GTGATA 118 consensus_4127#1 ANTGATAAGATGAGATAATTCTGAAATTAAA-TTCAAATGGAGTTGATAGTGAAGTGATA 106 * **************************** ******** ************ ****** consensus_4127#0 CTGTCATGGCTATTATGT-GTGTATGTGCATAAACCAATATCAA-TGGCCATTATGTGTG 176 consensus_4127#1 CTGG-ATGGGTATTATGTTGTGTATGTGCATAAAC-AATATCAAGTGGCATTCATGTGTG 164 *** **** ******** **************** ******** **** * ******* consensus_4127#0 TATGTGCATACCCCAATATCAATGGCTAATATGTGTGTACGTCAATATATACTTGTTTAA 236 consensus_4127#1 TATGTGCATACCCCAATATCAAGGGGTAATATGTGTGTACGTCAATATATACTTGTTTAA 224 ********************** ** ********************************** consensus_4127#0 TTTTATTCCCTCCCACCGAAGAATACATCAGTCAGAAAACTAAATGAATTCCCTAGTTAA 296 consensus_4127#1 TTTTATTCCCTCCCACCGAAGAATACATCAGTCAGAAAACTAAATGAATTCCCTAGTTAA 284 ************************************************************ consensus_4127#0 TGTTTCTCTTATTCAAGACTCGATCTATATGTTTCTCCAACTCTTTTTTTTTTT----GG 352 consensus_4127#1 GGTTTCTCTTATTCAAGACTCGATCTATATGTTTCTCCAACTCTTTTTTTTTTTTTTGGG 344 ***************************************************** ** consensus_4127#0 ACAACCTG-CAAGGTGCACAAATTATTATGCGGATGTGTGGAGAAAAAGTTGTTATCTGC 411 consensus_4127#1 ACAACCTGGNAGGGTGCACAAATTATTATGCG---------------------------- 376 ******** * ******************** consensus_4127#0 ATATGTTCCAGTAATTTAGATAGCAGATCTAGTCTTTTGTCAAGCTAGATAGCATATAAT 471 consensus_4127#1 ------------------------------------------------------------ consensus_4127#0 AGGAAAGTACATGTACTCCTCCAAATTGAAGCAGCTAATGGTTCTATTTACTAAAAGAGT 531 consensus_4127#1 ------------------------------------------------------------ consensus_4127#0 TTCCTGTATCGGCACTATTGCACAGTATTT 561 consensus_4127#1 ------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||