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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4133#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1646 fasta sequence
[TTTGCTGGGCTTCAGGGGCGTGGCCTCGTCGAGTTTTTTTGTTCCTCGGAGGGGCGGCAAGGAGGCGGATTTGGAGCAATTCGTAAGACTAGTGGTGGTGGTGGTGGTGGTGGCTGGTTGGCGCCATGAGCTTCGTGTTCCGGGGGAGCAGAGGTGACATCGAGGCCGGAGGCTTCCCGGGGTTCGCCCCGGAGCGCCGCGCCATGCGGATTCATGCGGGTGGTCGGCCGGTGAACAGCAACCTGGCTTTTCTTGTCACTGTTCTTATGTTGTTCATGGTACTGAACTCACACCAGATGTCTCCGAACTTTTTGGTTTGGCTGGTTTTGGGTGTGTTCCTAATGGCCACCAGCCTAAGGATGTACGCCACATGCCAGCAGCTCCAAGCGCAGGCGCAAGCTCACGCTGCAGCTGCCAACGGCTTCCTTGGACACACTGAGCTGCGGGTGCATGTCCCGCCGACCATAGCTCTCGCCACACGAGGCCGTTTGCAGAGCCTTAGGCTCCAACTTGCGCTACTTGACCGCGAGTTCGATGATTTAGATTATGATGCCCTTAGGGCCTTGGATGCAGACAATAGCCCTCATGCTCCTTCGATGAGTGAAGAAGAAATAAATGCTCTTCCTGTATTCAAATACAAGGTTCAGGCACATCAGGGAAGTGCCTCTTTCCGAAAAAGTGATGGACCATCTCAACCATCTGTTTCTTCTACTGAATCTGGCAATGAGAAAAAGCAGGATCGTTTCAAGGCTGATGCAACTGACAACACCCTGGAGGATGAGTTGACATGCAGTGTTTGCTTAGAACAAGTCGTTGTGGGTGATCTATTGAGAAGCCTACCATGCCTGCACCAGTTTCATGCAAACTGCATCGATCCATGGTTGCGCCAACAGGGAACATGCCCAGTTTGCAAGCACCGTGTAAGCGATGGGTGGCATGGTGAAGCAGATGCTTCTAACATGGTATAAGCTGCTGGGAGTGGCCAGCAGGTCTTAAGCTAAAACTACTGACTTAACCCACGGAATGAGGATTAGCTGTTTAGTCTTGAGGAGTGTTTTTGTACATAAAAAAACGTTCACTTCTCTGTGATGTTTATGCATCAAAAGGTTGTGATATTTTTGGTTGACCTGTACCCTGTTCAGTATGAACTCACATACAATCCTTTTTACTCTGTTTCCGTGGGGAAATTGGCGTATTATGGGTGTTTAAGGCTGAAGATCAGTAGAGGATTTAAGATCCAAGAGTAGTGGTCTGGTCTCTATTAGTCTTAAGTAAAAATGATCTTAACTGTTAGTATTATCACAAGTAAAAAGGAGAAACTGATTTATGAGTCCTACCATCATTATATTTTTTTCCTTATTTAGGGCAATCAAGTTTTTGACTATTTTAAAGACTCTTAACTACTAATTTAGCTATGCTTCTATGAGTTTACTAATGTAGCCTCTATACTACGCGCACGCCAGCGTCCAAGCCGAGCAGCGATGCTGTGCACTCCCACTCGACGCGGTCGTGCTGCGACGCTTCAGCCTGGGCCTTGGATGGCAATTAGTCTGGGTTTCTTTTATGTTTCGACTGAATCATTTGTTTTGAACTCAAATATCCCGTATATGAACATCTGGGAAAAGGATAAAGAAATGGCGATACTT]
[+] EMBL AK060183 [TTTGCTGGGCTTCAGGGGCGTGGCCTCGTCGAGTTTTTTTGTTCCTCGGAGGGGCGGCAAGGAGGCGGATTTGGAGCAATTCGTAAGACTAGTGGTGGTGGTGGTGGTGGTGGCTGGTTGGCGCCATGAGCTTCGTGTTCCGGGGGAGCAGAGGTGACATCGAGGCCGGAGGCTTCCCGGGGTTCGCCCCGGAGCGCCGCGCCATGCGGATTCATGCGGGTGGTCGGCCGGTGAACAGCAACCTGGCTTTTCTTGTCACTGTTCTTATGTTGTTCATGGTACTGAACTCACACCAGATGTCTCCGAACTTTTTGGTTTGGCTGGTTTTGGGTGTGTTCCTAATGGCCACCAGCCTAAGGATGTACGCCACATGCCAGCAGCTCCAAGCGCAGGCGCAAGCTCACGCTGCAGCTGCCAACGGCTTCCTTGGACACACTGAGCTGCGGGTGCATGTCCCGCCGACCATAGCTCTCGCCACACGAGGCCGTTTGCAGAGCCTTAGGCTCCAACTTGCGCTACTTGACCGCGAGTTCGATGATTTAGATTATGATGCCCTTAGGGCCTTGGATGCAGACAATAGCCCTCATGCTCCTTCGATGAGTGAAGAAGAAATAAATGCTCTTCCTGTATTCAAATACAAGGTTCAGGCACATCAGGGAAGTGCCTCTTTCCGAAAAAGTGATGGACCATCTCAACCATCTGTTTCTTCTACTGAATCTGGCAATGAGAAAAAGCAGGATCGTTTCAAGGCTGATGCAACTGACAACACCCTGGAGGATGAGTTGACATGCAGTGTTTGCTTAGAACAAGTCGTTGTGGGTGATCTATTGAGAAGCCTACCATGCCTGCACCAGTTTCATGCAAACTGCATCGATCCATGGTTGCGCCAACAGGGAACATGCCCAGTTTGCAAGCACCGTGTAAGCGATGGGTGGCATGGTGAAGCAGATGCTTCTAACATGGTATAAGCTGCTGGGAGTGGCCAGCAGGTCTTAAGCTAAAACTACTGACTTAACCCACGGAATGAGGATTAGCTGTTTAGTCTTGAGGAGTGTTTTTGTACATAAAAAAACGTTCACTTCTCTGTGATGTTTATGCATCAAAAGGTTGTGATATTTTTGGTTGACCTGTACCCTGTTCAGTATGAACTCACATACAATCCTTTTTACTCTGTTTCCGTGGGGAAATTGGCGTATTATGGGTGTTTAAGGCTGAAGATCAGTAGAGGATTTAAGATCCAAGAGTAGTGGTCTGGTCTCTATTAGTCTTAAGTAAAAATGATCTTAACTGTTAGTATTATCACAAGTAAAAAGGAGAAACTGATTTATGAGTCCTACCATCATTATATTTTTTTCCTTATTTAGGGCAATCAAGTTTTTGACTATTTTAAAGACTCTTAACTACTAATTTAGCTATGCTTCTATGAGTTTACTAATGTAGCCTCTATACTACGCGCACGCCAGCGTCCAAGCCGAGCAGCGATGCTGTGCACTCCCACTCGACGCGGTCGTGCTGCGACGCTTCAGCCTGGGCCTTGGATGGCAATTAGTCTGGGTTTCTTTTATGTTTCGACTGAATCATTTGTTTTGAACTCAAATATCCCGTATATGAACATCTGGGAAAAGGATAAAGAAATGGCGATACTT]
consensusID : consensus_4133#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1460 fasta sequence
[CTCTCGTTTTCCCCATCCGCACCGGCTGCTCCTCGTCGCGCCGACGCCTCCGCGCGCCAGCGAATCGCCGCCTCGAGAGGCCCCTCGTCGCCGATCAGGGGCGTGGCCTCGTCGAGTTTTTTTGTTCCTCGGAGGGGCGGCAAGGAGGCGGATTTGGAGCAATTCGTAAGACTAGTGGTGGTGGTGGTGGTGGTGGCTGGTTGGCGCCATGAGCTTCGTGTTCCGGGGGAGCAGAGGTGACATCGAGGCCGGAGGCTTCCCGGGGTTCGCCCCGGAGCGCCGCGCCATGGTGAGCGTTTCTGCTTAAATCGGATTCATGCGGGTGGTCGGCCGGTGAACAGCAACCTGGCTTTTCTTGTCACTGTTCTTATGTTGTTCATGGTACTGAACTCACACCAGATGTCTCCGAACTTTTTGGTTTGGCTGGTTTTGGGTGTGTTCCTAATGGCCACCAGCCTAAGGATGTACGCCACATGCCAGCAGCTCCAAGCGCAGGCGCAAGCTCACGCTGCAGCTGCCAACGGCTTCCTTGGACACACTGAGCTGCGGGTGCATGTCCCGCCGACCATAGCTCTCGCCACACGAGGCCGTTTGCAGAGCCTTAGGCTCCAACTTGCGCTACTTGACCGCGAGTTCGATGATTTAGATTATGATGCCCTTAGGGCCTTGGATGCAGACAATAGCCCTCATGCTCCTTCGATGAGTGAAGAAGAAATAAATGCTCTTCCTGTATTCAAATACAAGGTTCAGGCACATCAGGGAAGTGCCTCTTTCCAAAAAAGTGATGGACCATCTCAACCATCTGTTTCTTCTACTGAATCTGGCAATGAGAAAAAGCAGGATCGTTTCAAGGCTGATGCAACTGACAACACCCTGGAGGATGAGTTGACATGCAGTGTTTGCTTAGAACAAGTCGTTGTGGGTGATCTATTGAGAAGCCTACCATGCCTGCACCAGTTTCATGCAAACTGCATCGATCCATGGTTGCGCCAACAGGGAACATGCCCAGTTTGCAAGCACCGTGTAAGCGATGGGTGGCATGGTGAAGCAGATGCTTCTAACATGGTATAAGCTGCTGGGAGTGGCCAGCAGGTCTTAAGCTAAAACTACTGACTTAACCCACGGAATGAGGATTAGCTGTTTAGTCTTGAGGAGTGTTTTTGTACATAAAAAAACGTTCACTTCTCTGTGATGTTTATGCATCAAAAGGTTGTGATATTTTTGGTTGACCTGTACCCTGTTCAGTA-TGAA-CTCA-CA-TAC--AAT--CCTTTTTACT-CTGTTTCCGTGGGGAAATTGGCGTATTATGGGTGTTTAAGGCTGAAGATCAGTAGAGGATTTAAGATCCAAGAGTAGTGGTCTGGTCTCTA-TTAGTCTTAAGTAAAAATGATCTTAACTGTTAGTATTATCACAAGTAAAAAGGAGAAACTGATTTATGAGTTCTACCATCATTAAAAAAAAAAAAA]
[+] EMBL AK071865 [CTCTCGTTTTCCCCATCCGCACCGGCTGCTCCTCGTCGCGCCGACGCCTCCGCGCGCCAGCGAATCGCCGCCTCGAGAGGCCCCTCGTCGCCGATCAGGGGCGTGGCCTCGTCGAGTTTTTTTGTTCCTCGGAGGGGCGGCAAGGAGGCGGATTTGGAGCAATTCGTAAGACTAGTGGTGGTGGTGGTGGTGGTGGCTGGTTGGCGCCATGAGCTTCGTGTTCCGGGGGAGCAGAGGTGACATCGAGGCCGGAGGCTTCCCGGGGTTCGCCCCGGAGCGCCGCGCCATGGTGAGCGTTTCTGCTTAAATCGGATTCATGCGGGTGGTCGGCCGGTGAACAGCAACCTGGCTTTTCTTGTCACTGTTCTTATGTTGTTCATGGTACTGAACTCACACCAGATGTCTCCGAACTTTTTGGTTTGGCTGGTTTTGGGTGTGTTCCTAATGGCCACCAGCCTAAGGATGTACGCCACATGCCAGCAGCTCCAAGCGCAGGCGCAAGCTCACGCTGCAGCTGCCAACGGCTTCCTTGGACACACTGAGCTGCGGGTGCATGTCCCGCCGACCATAGCTCTCGCCACACGAGGCCGTTTGCAGAGCCTTAGGCTCCAACTTGCGCTACTTGACCGCGAGTTCGATGATTTAGATTATGATGCCCTTAGGGCCTTGGATGCAGACAATAGCCCTCATGCTCCTTCGATGAGTGAAGAAGAAATAAATGCTCTTCCTGTATTCAAATACAAGGTTCAGGCACATCAGGGAAGTGCCTCTTTCCAAAAAAGTGATGGACCATCTCAACCATCTGTTTCTTCTACTGAATCTGGCAATGAGAAAAAGCAGGATCGTTTCAAGGCTGATGCAACTGACAACACCCTGGAGGATGAGTTGACATGCAGTGTTTGCTTAGAACAAGTCGTTGTGGGTGATCTATTGAGAAGCCTACCATGCCTGCACCAGTTTCATGCAAACTGCATCGATCCATGGTTGCGCCAACAGGGAACATGCCCAGTTTGCAAGCACCGTGTAAGCGATGGGTGGCATGGTGAAGCAGATGCTTCTAACATGGTATAAGCTGCTGGGAGTGGCCAGCAGGTCTTAAGCTAAAACTACTGACTTAACCCACGGAATGAGGATTAGCTGTTTAGTCTTGAGGAGTGTTTTTGTACATAAAAAAACGTTCACTTCTCTGTGATGTTTATGCATCAAAAGGTTGTGATATTTTTGGTTGACCTGTACCCTGTTCAGTA TGAA CTCA CA TAC AAT CCTTTTTACT CTGTTTCCGTGGGGAAATTGGCGTATTATGGGTGTTTAAGGCTGAAGATCAGTAGAGGATTTAAGATCCAAGAGTAGTGGTCTGGTCTCTA TTAGTCTTAAGTAAAAATGATCTTAACTGTTAGTATTATCACAAGTAAAAAGGAGAAACTGATT ]
[+] EMBL BM037939 [ TATGCATCAAAAGGTTGTGATATTTTTGGTTGACCTGTACCCTGTTCAGTATTGAACCTCACCATTACCAAATTCCCTTTTTACTCCTGTTTCCGTGGGGAAATTGGCGTATTATGGGTGTTTAAGGCTGAAGATCAGTAGAGGATTTAAGATCC AGAGTAGTGGTCTGGTCTCTATTTAGTCTTAAGTAAAAATGATCTTAACTGTTAGTA TATCACAAGTAAAAAGGAGAAACTGATTTATGAGTTCTACCATCATTAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4133#0 ------------------------------------------------------------
consensus_4133#1 CTCTCGTTTTCCCCATCCGCACCGGCTGCTCCTCGTCGCGCCGACGCCTCCGCGCGCCAG 60
consensus_4133#0 -----------------------TTTGCTGGGCTTCAGGGGCGTGGCCTCGTCGAGTTTT 37
consensus_4133#1 CGAATCGCCGCCTCGAGAGGCCCCTCGTCGCCGATCAGGGGCGTGGCCTCGTCGAGTTTT 120
* * * **************************
consensus_4133#0 TTTGTTCCTCGGAGGGGCGGCAAGGAGGCGGATTTGGAGCAATTCGTAAGACTAGTGGTG 97
consensus_4133#1 TTTGTTCCTCGGAGGGGCGGCAAGGAGGCGGATTTGGAGCAATTCGTAAGACTAGTGGTG 180
************************************************************
consensus_4133#0 GTGGTGGTGGTGGTGGCTGGTTGGCGCCATGAGCTTCGTGTTCCGGGGGAGCAGAGGTGA 157
consensus_4133#1 GTGGTGGTGGTGGTGGCTGGTTGGCGCCATGAGCTTCGTGTTCCGGGGGAGCAGAGGTGA 240
************************************************************
consensus_4133#0 CATCGAGGCCGGAGGCTTCCCGGGGTTCGCCCCGGAGCGCCGCGCCATG----------- 206
consensus_4133#1 CATCGAGGCCGGAGGCTTCCCGGGGTTCGCCCCGGAGCGCCGCGCCATGGTGAGCGTTTC 300
*************************************************
consensus_4133#0 ---------CGGATTCATGCGGGTGGTCGGCCGGTGAACAGCAACCTGGCTTTTCTTGTC 257
consensus_4133#1 TGCTTAAATCGGATTCATGCGGGTGGTCGGCCGGTGAACAGCAACCTGGCTTTTCTTGTC 360
***************************************************
consensus_4133#0 ACTGTTCTTATGTTGTTCATGGTACTGAACTCACACCAGATGTCTCCGAACTTTTTGGTT 317
consensus_4133#1 ACTGTTCTTATGTTGTTCATGGTACTGAACTCACACCAGATGTCTCCGAACTTTTTGGTT 420
************************************************************
consensus_4133#0 TGGCTGGTTTTGGGTGTGTTCCTAATGGCCACCAGCCTAAGGATGTACGCCACATGCCAG 377
consensus_4133#1 TGGCTGGTTTTGGGTGTGTTCCTAATGGCCACCAGCCTAAGGATGTACGCCACATGCCAG 480
************************************************************
consensus_4133#0 CAGCTCCAAGCGCAGGCGCAAGCTCACGCTGCAGCTGCCAACGGCTTCCTTGGACACACT 437
consensus_4133#1 CAGCTCCAAGCGCAGGCGCAAGCTCACGCTGCAGCTGCCAACGGCTTCCTTGGACACACT 540
************************************************************
consensus_4133#0 GAGCTGCGGGTGCATGTCCCGCCGACCATAGCTCTCGCCACACGAGGCCGTTTGCAGAGC 497
consensus_4133#1 GAGCTGCGGGTGCATGTCCCGCCGACCATAGCTCTCGCCACACGAGGCCGTTTGCAGAGC 600
************************************************************
consensus_4133#0 CTTAGGCTCCAACTTGCGCTACTTGACCGCGAGTTCGATGATTTAGATTATGATGCCCTT 557
consensus_4133#1 CTTAGGCTCCAACTTGCGCTACTTGACCGCGAGTTCGATGATTTAGATTATGATGCCCTT 660
************************************************************
consensus_4133#0 AGGGCCTTGGATGCAGACAATAGCCCTCATGCTCCTTCGATGAGTGAAGAAGAAATAAAT 617
consensus_4133#1 AGGGCCTTGGATGCAGACAATAGCCCTCATGCTCCTTCGATGAGTGAAGAAGAAATAAAT 720
************************************************************
consensus_4133#0 GCTCTTCCTGTATTCAAATACAAGGTTCAGGCACATCAGGGAAGTGCCTCTTTCCGAAAA 677
consensus_4133#1 GCTCTTCCTGTATTCAAATACAAGGTTCAGGCACATCAGGGAAGTGCCTCTTTCCAAAAA 780
******************************************************* ****
consensus_4133#0 AGTGATGGACCATCTCAACCATCTGTTTCTTCTACTGAATCTGGCAATGAGAAAAAGCAG 737
consensus_4133#1 AGTGATGGACCATCTCAACCATCTGTTTCTTCTACTGAATCTGGCAATGAGAAAAAGCAG 840
************************************************************
consensus_4133#0 GATCGTTTCAAGGCTGATGCAACTGACAACACCCTGGAGGATGAGTTGACATGCAGTGTT 797
consensus_4133#1 GATCGTTTCAAGGCTGATGCAACTGACAACACCCTGGAGGATGAGTTGACATGCAGTGTT 900
************************************************************
consensus_4133#0 TGCTTAGAACAAGTCGTTGTGGGTGATCTATTGAGAAGCCTACCATGCCTGCACCAGTTT 857
consensus_4133#1 TGCTTAGAACAAGTCGTTGTGGGTGATCTATTGAGAAGCCTACCATGCCTGCACCAGTTT 960
************************************************************
consensus_4133#0 CATGCAAACTGCATCGATCCATGGTTGCGCCAACAGGGAACATGCCCAGTTTGCAAGCAC 917
consensus_4133#1 CATGCAAACTGCATCGATCCATGGTTGCGCCAACAGGGAACATGCCCAGTTTGCAAGCAC 1020
************************************************************
consensus_4133#0 CGTGTAAGCGATGGGTGGCATGGTGAAGCAGATGCTTCTAACATGGTATAAGCTGCTGGG 977
consensus_4133#1 CGTGTAAGCGATGGGTGGCATGGTGAAGCAGATGCTTCTAACATGGTATAAGCTGCTGGG 1080
************************************************************
consensus_4133#0 AGTGGCCAGCAGGTCTTAAGCTAAAACTACTGACTTAACCCACGGAATGAGGATTAGCTG 1037
consensus_4133#1 AGTGGCCAGCAGGTCTTAAGCTAAAACTACTGACTTAACCCACGGAATGAGGATTAGCTG 1140
************************************************************
consensus_4133#0 TTTAGTCTTGAGGAGTGTTTTTGTACATAAAAAAACGTTCACTTCTCTGTGATGTTTATG 1097
consensus_4133#1 TTTAGTCTTGAGGAGTGTTTTTGTACATAAAAAAACGTTCACTTCTCTGTGATGTTTATG 1200
************************************************************
consensus_4133#0 CATCAAAAGGTTGTGATATTTTTGGTTGACCTGTACCCTGTTCAGTATGAACTCACATAC 1157
consensus_4133#1 CATCAAAAGGTTGTGATATTTTTGGTTGACCTGTACCCTGTTCAGTATGAACTCACATAC 1260
************************************************************
consensus_4133#0 AATCCTTTTTACTCTGTTTCCGTGGGGAAATTGGCGTATTATGGGTGTTTAAGGCTGAAG 1217
consensus_4133#1 AATCCTTTTTACTCTGTTTCCGTGGGGAAATTGGCGTATTATGGGTGTTTAAGGCTGAAG 1320
************************************************************
consensus_4133#0 ATCAGTAGAGGATTTAAGATCCAAGAGTAGTGGTCTGGTCTCTATTAGTCTTAAGTAAAA 1277
consensus_4133#1 ATCAGTAGAGGATTTAAGATCCAAGAGTAGTGGTCTGGTCTCTATTAGTCTTAAGTAAAA 1380
************************************************************
consensus_4133#0 ATGATCTTAACTGTTAGTATTATCACAAGTAAAAAGGAGAAACTGATTTATGAGTCCTAC 1337
consensus_4133#1 ATGATCTTAACTGTTAGTATTATCACAAGTAAAAAGGAGAAACTGATTTATGAGTTCTAC 1440
******************************************************* ****
consensus_4133#0 CATCATTATATTTTTTTCCTTATTTAGGGCAATCAAGTTTTTGACTATTTTAAAGACTCT 1397
consensus_4133#1 CATCATTAAAAAAAAAAAAA---------------------------------------- 1460
******** *
consensus_4133#0 TAACTACTAATTTAGCTATGCTTCTATGAGTTTACTAATGTAGCCTCTATACTACGCGCA 1457
consensus_4133#1 ------------------------------------------------------------
consensus_4133#0 CGCCAGCGTCCAAGCCGAGCAGCGATGCTGTGCACTCCCACTCGACGCGGTCGTGCTGCG 1517
consensus_4133#1 ------------------------------------------------------------
consensus_4133#0 ACGCTTCAGCCTGGGCCTTGGATGGCAATTAGTCTGGGTTTCTTTTATGTTTCGACTGAA 1577
consensus_4133#1 ------------------------------------------------------------
consensus_4133#0 TCATTTGTTTTGAACTCAAATATCCCGTATATGAACATCTGGGAAAAGGATAAAGAAATG 1637
consensus_4133#1 ------------------------------------------------------------
consensus_4133#0 GCGATACTT 1646
consensus_4133#1 ---------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||