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Oryza sativa
cluster # 4144 cluster # 4144       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4144#0 length = 1417 sequences # 3  

consensusID : consensus_4144#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1417
fasta sequence
                              [GTGGTGCTCGTCTCCTCCCAGGCCGCCGCCGACGAGTGCTTCACGGCGCACGACGCCGCGCTCGCGGGCCGCCCGGGGCTCGCGTCGCGGCGGCTGCTCACCGACGGCTGCCCCACCATCGCCACGGCGGGGCACAGCGCGCGGTGGCGCCACCTCCGCCGCCTCGCCACCGTCCACGCCCTCTGCGCCCGCCGCCTCGCCGCCACCTCCCCCGCGCGCGACGCCGAGGCCCGCGCCATGGCGGCGAGGCTCTACTCGTCCTCCTCGTCGTCGTCGGCGGCGTCGGCCGTCGTCGTCGGCGTGAAGCCGGCGGCGTACGGGTTCGTGGCGAGCGTGATCATGTCCATGGTCGCCGGCGAGCGCATGGCGGAGGAGGACGTGCTCCGGTTCAAGGCCATCACCGAGGCCGGGCTCGCGGCGGCGGGGGCGGCGAACCGGCAAGACTTCCTCCCGTTCCTCCGGCTGCTGGACTTCGGGAGAGCCCGCCGGCGGCTCGCCGGCATCGCCAAGGAGCGGCACGACTTCGGCCAGCGCATCGTCGACGAGTACAGGCGCCGCCACCGCCGTCGCCTCGCCGTCGCCGCCGATGACTTCTCCTCCTCGCCGCCGCGGCGTACGGTCATCGGCGACCTGCTCCGGCAGCAGGAGAGCTCGCCGGAGTCGTACGCCGACGAGGTCATCCGTACCGTCTGCTTGAGTTTACTACAAGCCGGAACTGACACATCAGCAAGCACGATCGAGTGGGCGATGGCTCTCCTCCTTAACAATCCAGATGTGCTCAGGAAAGCAACGGATGAGATTAACTCTGTTGTTGGCATGTCCCGCCTCCTCCAGGAACCCGACCTCGCTAACCTCCCCTACCTCCGGTGCATCATCACGGAGACGCTCCGGCTGTACCCTCTAGCCCCGCACCTTGTCCCGCACGAGGCGTCACGTGACTGCATGGTCGCTGGACACGTCATCGCACGCGGGACGATGGTGTTGGTCGACGTGTACTCCATGCAGCGGGATCCCCGTGTTTGGGAGGACCCGGACAAGTTCATACCCGAGAGGTTCAAGGGTTTCAAAGTCGATGGAAGTGGGTGGATGATGCCCTTCGGTATGGGGAGGCGGAAGTGCCCCGGTGAAGGCCTTGCTCTTAGGACGGTAGGGATGGCGCTAGGGGTTATGATACAATGCTTTCAGTGGGAGCGCGTCGGAAAGAAGAAGGTTGATATGAGTGAAGGTTCTGGGCTCACCATGCCTATGGCCGTGCCTCTCATGGCCATGTGCCTACCACGTGTGGAGATGGAGTCTGTGCTCAAAAGTCTCTAGAAATTTTTTTTTCTTTGATACGTTATAGGATCTGTCACGCCAAATAATTGTTTTGTGTAATTGATTTCAACCAAATAGTCAAATATTCGGTCATTAAAAAAAA]

[+] EMBL AK121238             [GTGGTGCTCGTCTCCTCCCAGGCCGCCGCCGACGAGTGCTTCACGGCGCACGACGCCGCGCTCGCGGGCCGCCCGGGGCTCGCGTCGCGGCGGCTGCTCACCGACGGCTGCCCCACCATCGCCACGGCGGGGCACAGCGCGCGGTGGCGCCACCTCCGCCGCCTCGCCACCGTCCACGCCCTCTGCGCCCGCCGCCTCGCCGCCACCTCCCCCGCGCGCGACGCCGAGGCCCGCGCCATGGCGGCGAGGCTCTACTCGTCCTCCTCGTCGTCGTCGGCGGCGTCGGCCGTCGTCGTCGGCGTGAAGCCGGCGGCGTACGGGTTCGTGGCGAGCGTGATCATGTCCATGGTCGCCGGCGAGCGCATGGCGGAGGAGGACGTGCTCCGGTTCAAGGCCATCACCGAGGCCGGGCTCGCGGCGGCGGGGGCGGCGAACCGGCAAGACTTCCTCCCGTTCCTCCGGCTGCTGGACTTCGGGAGAGCCCGCCGGCGGCTCGCCGGCATCGCCAAGGAGCGGCACGACTTCGGCCAGCGCATCGTCGACGAGTACAGGCGCCGCCACCGCCGTCGCCTCGCCGTCGCCGCCGATGACTTCTCCTCCTCGCCGCCGCGGCGTACGGTCATCGGCGACCTGCTCCGGCAGCAGGAGAGCTCGCCGGAGTCGTACGCCGACGAGGTCATCCGTACCGTCTGCTTGAGTTTACTACAAGCCGGAACTGACACATCAGCAAGCACGATCGAGTGGGCGATGGCTCTCCTCCTTAACAATCCAGATGTGCTCAGGAAAGCAACGGATGAGATTAACTCTGTTGTTGGCATGTCCCGCCTCCTCCAGGAACCCGACCTCGCTAACCTCCCCTACCTCCGGTGCATCATCACGGAGACGCTCCGGCTGTACCCTCTAGCCCCGCACCTTGTCCCGCACGAGGCGTCACGTGACTGCATGGTCGCTGGACACGTCATCGCACGCGGGACGATGGTGTTGGTCGACGTGTACTCCATGCAGCGGGATCCCCGTGTTTGGGAGGACCCGGACAAGTTCATACCCGAGAGGTTCAAGGGTTTCAAAGTCGATGGAAGTGGGTGGATGATGCCCTTCGGTATGGGGAGGCGGAAGTGCCCCGGTGAAGGCCTTGCTCTTAGGACGGTAGGGATGGCGCTAGGGGTTATGATACAATGCTTTCAGTGGGAGCGCGTCGGAAAGAAGAAGGTTGATATGAGTGAAGGTTCTGGGCTCACCATGCCTATGGCCGTGCCTCTCATGGCCATGTGCCTACCACGTGTGGAGATGGAGTCTGTGCTCAAAAGTCTCTAGAAATTTTTTTTTCTTTGATACGTTATAGGATCTGTCACGCCAAATAATTGTTTTGTGTAATTGATTTCAACCAAATAGTCAAATA                  ]
[+] EMBL AU173235             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GTCGACGTGTACTCCATGCAGCGGGATCCCCGTGTTTGGGAGGACCCGGACAAGTTCATACCCGAGAGGTTCAAGGGTTTCAAAGTCGATGGAAGTGGGTGGATGATGCCCTTCGGTATGGGGAGGCGGAAGTGCCCCGGTGAAGGCCTTGCTCTTAGGACGGTAGGGATGGCGCTAGGGGTTATGATACAATGCTTTCAGTGGGAGCGCGTCGGAAAGAAGAAGGTTGATATGAGTGAAGGTTCTGGGCTCACCATGCCTATGGCCGTGCCTCTCATGGCCATGTGCCTACCACGTGTGGAGATGGAGTCTGTGCTCAAAAGTCTCTAGAAATTTTTTTTTCTTTGATACGTTATAGGATCTGTCACGCCAAATAATTGTTTTGTGTAATTGATTTCAACCAAATAGTCAAATATTCGGTCATTAAAAA   ]
[+] EMBL AF140486             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           AGCGGGATCCCCGTGTTTGGGAGGACCCGGACAAGTTCATACCCGAGAGGTTCAAGGGTTTCAAAGTCGATAGAAGTGGGTGGATGATGCCCTTCGGTATGGGGAGGCGGAAGTGCCCCGGTGAAGGCCTTGCTCTTAGGACGGTGGGGATGGCGCTAGGGGTTATGATACAATGCTTTCAGTGGGAGCGGCTCGGAAAGAAGAAGGTTGATATGAGTGAAGGTTCTGGGCTCACCATGCCTACGGCCGTGCCTCTCATGGCCATGTGCCTACCACGTGTGGAGATGGAGTCTGTGCTCAAAAGTCTCTAGAAATTTTTTTTTCTTTCATACGTTATAGGATCTGTCACGCCAAATAATTGTTCTGTGTAATTGATTTCAACCAAATAGTCAAATATTCGGTCAAAAAAAAAAA]


>consensus_4144#0 GTGGTGCTCGTCTCCTCCCAGGCCGCCGCCGACGAGTGCTTCACGGCGCACGACGCCGCG CTCGCGGGCCGCCCGGGGCTCGCGTCGCGGCGGCTGCTCACCGACGGCTGCCCCACCATC GCCACGGCGGGGCACAGCGCGCGGTGGCGCCACCTCCGCCGCCTCGCCACCGTCCACGCC CTCTGCGCCCGCCGCCTCGCCGCCACCTCCCCCGCGCGCGACGCCGAGGCCCGCGCCATG GCGGCGAGGCTCTACTCGTCCTCCTCGTCGTCGTCGGCGGCGTCGGCCGTCGTCGTCGGC GTGAAGCCGGCGGCGTACGGGTTCGTGGCGAGCGTGATCATGTCCATGGTCGCCGGCGAG CGCATGGCGGAGGAGGACGTGCTCCGGTTCAAGGCCATCACCGAGGCCGGGCTCGCGGCG GCGGGGGCGGCGAACCGGCAAGACTTCCTCCCGTTCCTCCGGCTGCTGGACTTCGGGAGA GCCCGCCGGCGGCTCGCCGGCATCGCCAAGGAGCGGCACGACTTCGGCCAGCGCATCGTC GACGAGTACAGGCGCCGCCACCGCCGTCGCCTCGCCGTCGCCGCCGATGACTTCTCCTCC TCGCCGCCGCGGCGTACGGTCATCGGCGACCTGCTCCGGCAGCAGGAGAGCTCGCCGGAG TCGTACGCCGACGAGGTCATCCGTACCGTCTGCTTGAGTTTACTACAAGCCGGAACTGAC ACATCAGCAAGCACGATCGAGTGGGCGATGGCTCTCCTCCTTAACAATCCAGATGTGCTC AGGAAAGCAACGGATGAGATTAACTCTGTTGTTGGCATGTCCCGCCTCCTCCAGGAACCC GACCTCGCTAACCTCCCCTACCTCCGGTGCATCATCACGGAGACGCTCCGGCTGTACCCT CTAGCCCCGCACCTTGTCCCGCACGAGGCGTCACGTGACTGCATGGTCGCTGGACACGTC ATCGCACGCGGGACGATGGTGTTGGTCGACGTGTACTCCATGCAGCGGGATCCCCGTGTT TGGGAGGACCCGGACAAGTTCATACCCGAGAGGTTCAAGGGTTTCAAAGTCGATGGAAGT GGGTGGATGATGCCCTTCGGTATGGGGAGGCGGAAGTGCCCCGGTGAAGGCCTTGCTCTT AGGACGGTAGGGATGGCGCTAGGGGTTATGATACAATGCTTTCAGTGGGAGCGCGTCGGA AAGAAGAAGGTTGATATGAGTGAAGGTTCTGGGCTCACCATGCCTATGGCCGTGCCTCTC ATGGCCATGTGCCTACCACGTGTGGAGATGGAGTCTGTGCTCAAAAGTCTCTAGAAATTT TTTTTTCTTTGATACGTTATAGGATCTGTCACGCCAAATAATTGTTTTGTGTAATTGATT TCAACCAAATAGTCAAATATTCGGTCATTAAAAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)