These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4154#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 2377 fasta sequence [GTTTATCATTTATTTGACTTACTTACAAGTGAACTCACGGGTTGGCCGGCTTGCATCCTTACCCACAGGTGAAGAAAAAGATGTCGGAGGACGACTTCATCCGCAACAACCGTGCCATCAACGCCGGCAAGGACCTCCCCAGGGAGTACCTCTCCGAGCTCTTCCACTCCATCTCCGGCAACGCCATCACCGTCTTCAGCCAGGCCTCCGCCGCCGCCGAGATGACGCCCACCAGATGGGCCGACCTCGTCAAGCGCTCCCGCGCCATCGACCCCTTCACCCCCTGCGACTTCAAGCACAAGCTCACCCGCGAGGTGTTCGTCACCGTCTCCGGCCCCGCCGTCGCCACCCTCGCCGCCATCTTCGACTACACCGACGACGAGGACATCCTCAACCAGTGCGTCGAGGGCCTCATCTCCGTCGCCCGGATCGCGCGCTACGGCCTCGAGGACGTCCTCGACGAGCTCCTCTGCTGCCTCTGCAAGTTCACCACGCTGCTCAACCCCTACGCCACCACCGAGGAGACGCTCTTCACCTTCAGCAATGAGCTCAAGCCCAGGATGGCCACGCTCGCGCTCTTCACCATCACCAACCGCTTCGGCGAGTCGGTGCGCGGCGCGTGGAAGAACGTCGTCGACTGCCTGCTCAAGCTCAAGCGCCTCAAGCTGCTGCCGCCGTCGCTGGTCGACCAGGAGGGCGGCGCCGGCGCCGCCGTG-AGCACGGAGCGGCTGGGACACCGGGCCAAGTCGGAGTCCGGCGTCATCTTCCCGTCGTCGCACCGTGGCGCCGGGACGAGCAGGCACGTGTCCGGCATGATCGGGCGGTTCTCGCAGTTCCTGTCGCTGGACGCCGGCGGCGAGTCGCTGCTGTCGGTGGGGAGCGAGTTCGAGAACAACCTCAAGATCATCCAGCAATGCCGGATCGGGAGCATCTTCACGGAGAGCGGGAAGCTGCCGGACGAGTCGGTGCAGAACCTGGGGCGGGCGCTCATCTTCGCCGCCGGCGGCAAGGGGCAGAAGTTCAGCACGCCGGTGGAGGAGGAGGAGACGGTGGGCTTCTGCTGGGACCTCATCGCGGTCGTCTCGTCGGCGAACGTGCACCGCTTCACCACGTTCTGGCCGCAGCTGCACGACTGCTTCGCCGCCGTGTCCCAGCTGCCGCTCTTCTCGCCGTGCCCGTTCGCCGAGAAGGCGATCGTGGCGCTGTTCAGGGTCGCCGTGAGGCTGCTCTCCGGCGGCGGCGGGGACCGGATGGCGGAGGAGCTGGTGTTCAAGTCGATCAACCTGATGTGGAAGCTGGACAAGGAGATCCTGGACACCTGCTGCGAAGGCATCTCGGAGTGCATCGTGAAGCTGCTGATGGAGTACGCCAGCAACGTGCAGACGCCGATCGGGTGGAAGACGGTGCTTCACCTGCTGTCCGTCACCGGGCGGCACCCGGAGACGTTCGACCAGTCGGTGGCCGCCATGATCAAGCTCATGAACGACGGCGCGCAGGTGGTGACGCGGTTCAACTACGCGGCGTGCATCGAGGCCGCCTTCGGGTTCGCGGCGCTCAAGATCAGCCCGCTCGACATCAGCACCAGGATCCTCCAGCTCATGGCCGACTCCGTCAACTGGCTCATTTTATGGCACAAGTCCGGCTACTCCGACCCGGGCAACGCCTGGAGCAGCTCAAGCTCGTCGTCGTCGGCGGCGGCGATGATGATGATGGAGGACGCGTCGCGGATGGGCAACCTGGCGACGAGCATGTTCATCAAGCTCGCGGAGGCGCTGCGCAAGACGAGCCTAGTCCGGCGAGAGGAGATACGGAACCAGGCGGTGGCGGAGCTGGGCCGAGCGTTCGCCCTGGCCGCCGCCGGCGAGCTCGAGCTGGGCCCGACGGGGTCGCTGGCGTGCTTCAACCTGGTCATCTTCGCCATGGTGGACGACCTGCACGAGAAGACGCTGGAGTACTCGAGGAGGGAGGGGGCGGAGAGGGAGACCCGGAGCATGGAGGGGACGCTGGCGGCGGCGACGGAGCTGCTCGCCGACGTGTTCGTGCTGTTCCTGGCGTGATGCAGGAGCTGGTGCCGAGGATGCTGAAGCGGATGATCGTGGAGATGAAGGACAAGGGGGTGCTGGTCGCCATGGAAGGAGACGAGCTGTGGGAGATCACCCACATCCAGATCCAGTGGATCGCTCCAGCTGTCATGGAGGAGCTCTTCCCTGATTGATTACTCACTTACTCACTGCAGTTAATTACTAGTGTTATTAAGTTAGAGGTTACTCTGATAACCAATGTCATATATTAAAAAACGGAGACAGTATTATTGTTCAGTCTTTCTTTTTATTCTAACTAGGAATGTACACATTACCTCTATAACCATCTACGAAAG] [+] EMBL AK109764 [GTTTATCATTTATTTGACTTACTTACAAGTGAACTCACGGGTTGGCCGGCTTGCATCCTTACCCACAGGTGAAGAAAAAGATGTCGGAGGACGACTTCATCCGCAACAACCGTGCCATCAACGCCGGCAAGGACCTCCCCAGGGAGTACCTCTCCGAGCTCTTCCACTCCATCTCCGGCAACGCCATCACCGTCTTCAGCCAGGCCTCCGCCGCCGCCGAGATGACGCCCACCAGATGGGCCGACCTCGTCAAGCGCTCCCGCGCCATCGACCCCTTCACCCCCTGCGACTTCAAGCACAAGCTCACCCGCGAGGTGTTCGTCACCGTCTCCGGCCCCGCCGTCGCCACCCTCGCCGCCATCTTCGACTACACCGACGACGAGGACATCCTCAACCAGTGCGTCGAGGGCCTCATCTCCGTCGCCCGGATCGCGCGCTACGGCCTCGAGGACGTCCTCGACGAGCTCCTCTGCTGCCTCTGCAAGTTCACCACGCTGCTCAACCCCTACGCCACCACCGAGGAGACGCTCTTCACCTTCAGCAATGAGCTCAAGCCCAGGATGGCCACGCTCGCGCTCTTCACCATCACCAACCGCTTCGGCGAGTCGGTGCGCGGCGCGTGGAAGAACGTCGTCGACTGCCTGCTCAAGCTCAAGCGCCTCAAGCTGCTGCCGCCGTCGCTGGTCGACCAGGAGGGCGGCGCCGGCGCCGCCGTG AGCACGGAGCGGCTGGGACACCGGGCCAAGTCGGAGTCCGGCGTCATCTTCCCGTCGTCGCACCGTGGCGCCGGGACGAGCAGGCACGTGTCCGGCATGATCGGGCGGTTCTCGCAGTTCCTGTCGCTGGACGCCGGCGGCGAGTCGCTGCTGTCGGTGGGGAGCGAGTTCGAGAACAACCTCAAGATCATCCAGCAATGCCGGATCGGGAGCATCTTCACGGAGAGCGGGAAGCTGCCGGACGAGTCGGTGCAGAACCTGGGGCGGGCGCTCATCTTCGCCGCCGGCGGCAAGGGGCAGAAGTTCAGCACGCCGGTGGAGGAGGAGGAGACGGTGGGCTTCTGCTGGGACCTCATCGCGGTCGTCTCGTCGGCGAACGTGCACCGCTTCACCACGTTCTGGCCGCAGCTGCACGACTGCTTCGCCGCCGTGTCCCAGCTGCCGCTCTTCTCGCCGTGCCCGTTCGCCGAGAAGGCGATCGTGGCGCTGTTCAGGGTCGCCGTGAGGCTGCTCTCCGGCGGCGGCGGGGACCGGATGGCGGAGGAGCTGGTGTTCAAGTCGATCAACCTGATGTGGAAGCTGGACAAGGAGATCCTGGACACCTGCTGCGAAGGCATCTCGGAGTGCATCGTGAAGCTGCTGATGGAGTACGCCAGCAACGTGCAGACGCCGATCGGGTGGAAGACGGTGCTTCACCTGCTGTCCGTCACCGGGCGGCACCCGGAGACGTTCGACCAGTCGGTGGCCGCCATGATCAAGCTCATGAACGACGGCGCGCAGGTGGTGACGCGGTTCAACTACGCGGCGTGCATCGAGGCCGCCTTCGGGTTCGCGGCGCTCAAGATCAGCCCGCTCGACATCAGCACCAGGATCCTCCAGCTCATGGCCGACTCCGTCAACTGGCTCATTTTATGGCACAAGTCCGGCTACTCCGACCCGGGCAACGCCTGGAGCAGCTCAAGCTCGTCGTCGTCGGCGGCGGCGATGATGATGATGGAGGACGCGTCGCGGATGGGCAACCTGGCGACGAGCATGTTCATCAAGCTCGCGGAGGCGCTGCGCAAGACGAGCCTAGTCCGGCGAGAGGAGATACGGAACCAGGCGGTGGCGGAGCTGGGCCGAGCGTTCGCCCTGGCCGCCGCCGGCGAGCTCGAGCTGGGCCCGACGGGGTCGCTGGCGTGCTTCAACCTGGTCATCTTCGCCATGGTGGACGACCTGCACGAGAAGACGCTGGAGTACTCGAGGAGGGAGGGGGCGGAGAGGGAGACCCGGAGCATGGAGGGGACGCTGGCGGCGGCGACGGAGCTGCTCGCCGACGTGTTCGTGCTGTTCCTGGCGTGATGCAGGAGCTGGTGCCGAGGATGCTGAAGCGGATGATCGTGGAGATGAAGGACAAGGGGGTGCTGGTCGCCATGGAAGGAGACGAGCTGTGGGAGATCACCCACATCCAGATCCAGTGGATCGCTCCAGCTGTCATGGAGGAGCTCTTCCCTGATTGATTACTCACTTACTCACTGCAGTTAATTACTAGTGTTATTAAGTTAGAGGTTACTCTGATAACCAATGTCATATATTAAAAAACGGAGACAGTATTATTGTTCAGTCTTTCTTTTTATTCTAACTAGGAATGTACACATTACCTCTATAACCATCTACGAAAG] [+] EMBL C73025 [ CAACCAGTGCGTCGAGGGCCTCATCTCCGTCGCCCGGATCGCGCGCTACGGCCTCGAGGACGTCCTCGACGAGCTCCTCTGCTGCCTCTGCAAGTTCACCACGCTGCTCAACCCCTACGCCACCACCGAGGAGACGCTCTTCACCTTCAGCAATGAGCTCAAGCCCAGGATGGCCACGCTCGCGCTCTTCACCATCACCAACCGCTTCGGCGAGTCGGTGCGCGGCGCGTGGAAGAACGTCGTCGACTGCCTGCTCAAGCTCAAGCGCCTCAAGCTGCTGCCGCCGTCGCTGGTCGACCAGGAGGGCGGCGCCGGCGCCGCGTTGAAGCACGGAGCGGCTGGGACACCGGGCCAAGTCGGAGTCCGGCGTCATCTTCCCGTCGTCGCACCGTGGCGCCGGGACGAGCAGGCACGTGTCCGGCATGATCGGGCGGTTCTCGCAGTT ] consensusID : consensus_4154#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 454 fasta sequence [TTCTGGCTGGGGNTGCTCCGGCGGCTGGACACGTGCATCAAGTCGGACCTGGCGGCGGNCGGCGGCGCCGGCGTGATGCAGGAGCTGGTGCCGAGGATGCTGAAGCGGATGATCGTGGAGATGAAGGACAAGGGGGTGCTGGTCGCCATGGAAGGAGACGAGCTGTGGGAGATCACCCACATCCAGATCCAGTGGATCGCTCCAGCTGTCATGGAGGAGCTCTTCCCTGATTGATTACTCACTTACTCACTGCAGTTAATTACTAGTGTTATTAAGTTAGAGGTTACTCTGATAACCAATGTCATATATTAAAAAACGGAGACAGTATTATTGTTCAGTCTTTCTTTTTATTCTAACTAGGAATGTACACATTACCTCTATAACCATCTACGAAAGACTATGGCTTAGTTTTGGACTAAAATTAGGAATCAAAGACTAATGAGACTTTTAAAAA] [+] EMBL AU101223 [TTCTGGCTGGGGNTGCTCCGGCGGCTGGACACGTGCATCAAGTCGGACCTGGCGGCGGNCGGCGGCGCCGGCGTGATGCAGGAGCTGGTGCCGAGGATGCTGAAGCGGATGATCGTGGAGATGAAGGACAAGGGGGTGCTGGTCGCCATGGAAGGAGACGAGCTGTGGGAGATCACCCACATCCAGATCCAGTGGATCGCTCCAGCTGTCATGGAGGAGCTCTTCCCTGATTGATTACTCACTTACTCACTGCAGTTAATTACTAGTGTTATTAAGTTAGAGGTTACTCTGATAACCAATGTCATATATTAAAAAACGGAGACAGTATTATTGTTCAGTCTTTCTTTTTATTCTAACTAGGAATGTACACATTACCTCTATAACCATCTACGAAAGACTATGGCTTAGTTTTGGACTAAAATTAGGAATCAAAGACTAATGAGACTTTTAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4154#0 GTTTATCATTTATTTGACTTACTTACAAGTGAACTCACGGGTTGGCCGGCTTGCATCCTT 60 consensus_4154#1 ------------------------------------------------------------ consensus_4154#0 ACCCACAGGTGAAGAAAAAGATGTCGGAGGACGACTTCATCCGCAACAACCGTGCCATCA 120 consensus_4154#1 ------------------------------------------------------------ consensus_4154#0 ACGCCGGCAAGGACCTCCCCAGGGAGTACCTCTCCGAGCTCTTCCACTCCATCTCCGGCA 180 consensus_4154#1 ------------------------------------------------------------ consensus_4154#0 ACGCCATCACCGTCTTCAGCCAGGCCTCCGCCGCCGCCGAGATGACGCCCACCAGATGGG 240 consensus_4154#1 ------------------------------------------------------------ consensus_4154#0 CCGACCTCGTCAAGCGCTCCCGCGCCATCGACCCCTTCACCCCCTGCGACTTCAAGCACA 300 consensus_4154#1 ------------------------------------------------------------ consensus_4154#0 AGCTCACCCGCGAGGTGTTCGTCACCGTCTCCGGCCCCGCCGTCGCCACCCTCGCCGCCA 360 consensus_4154#1 ------------------------------------------------------------ consensus_4154#0 TCTTCGACTACACCGACGACGAGGACATCCTCAACCAGTGCGTCGAGGGCCTCATCTCCG 420 consensus_4154#1 ------------------------------------------------------------ consensus_4154#0 TCGCCCGGATCGCGCGCTACGGCCTCGAGGACGTCCTCGACGAGCTCCTCTGCTGCCTCT 480 consensus_4154#1 ------------------------------------------------------------ consensus_4154#0 GCAAGTTCACCACGCTGCTCAACCCCTACGCCACCACCGAGGAGACGCTCTTCACCTTCA 540 consensus_4154#1 ------------------------------------------------------------ consensus_4154#0 GCAATGAGCTCAAGCCCAGGATGGCCACGCTCGCGCTCTTCACCATCACCAACCGCTTCG 600 consensus_4154#1 ------------------------------------------------------------ consensus_4154#0 GCGAGTCGGTGCGCGGCGCGTGGAAGAACGTCGTCGACTGCCTGCTCAAGCTCAAGCGCC 660 consensus_4154#1 ------------------------------------------------------------ consensus_4154#0 TCAAGCTGCTGCCGCCGTCGCTGGTCGACCAGGAGGGCGGCGCCGGCGCCGCCGTGAGCA 720 consensus_4154#1 ------------------------------------------------------------ consensus_4154#0 CGGAGCGGCTGGGACACCGGGCCAAGTCGGAGTCCGGCGTCATCTTCCCGTCGTCGCACC 780 consensus_4154#1 ------------------------------------------------------------ consensus_4154#0 GTGGCGCCGGGACGAGCAGGCACGTGTCCGGCATGATCGGGCGGTTCTCGCAGTTCCTGT 840 consensus_4154#1 ------------------------------------------------------------ consensus_4154#0 CGCTGGACGCCGGCGGCGAGTCGCTGCTGTCGGTGGGGAGCGAGTTCGAGAACAACCTCA 900 consensus_4154#1 ------------------------------------------------------------ consensus_4154#0 AGATCATCCAGCAATGCCGGATCGGGAGCATCTTCACGGAGAGCGGGAAGCTGCCGGACG 960 consensus_4154#1 ------------------------------------------------------------ consensus_4154#0 AGTCGGTGCAGAACCTGGGGCGGGCGCTCATCTTCGCCGCCGGCGGCAAGGGGCAGAAGT 1020 consensus_4154#1 ------------------------------------------------------------ consensus_4154#0 TCAGCACGCCGGTGGAGGAGGAGGAGACGGTGGGCTTCTGCTGGGACCTCATCGCGGTCG 1080 consensus_4154#1 ------------------------------------------------------------ consensus_4154#0 TCTCGTCGGCGAACGTGCACCGCTTCACCACGTTCTGGCCGCAGCTGCACGACTGCTTCG 1140 consensus_4154#1 ------------------------------------------------------------ consensus_4154#0 CCGCCGTGTCCCAGCTGCCGCTCTTCTCGCCGTGCCCGTTCGCCGAGAAGGCGATCGTGG 1200 consensus_4154#1 ------------------------------------------------------------ consensus_4154#0 CGCTGTTCAGGGTCGCCGTGAGGCTGCTCTCCGGCGGCGGCGGGGACCGGATGGCGGAGG 1260 consensus_4154#1 ------------------------------------------------------------ consensus_4154#0 AGCTGGTGTTCAAGTCGATCAACCTGATGTGGAAGCTGGACAAGGAGATCCTGGACACCT 1320 consensus_4154#1 ------------------------------------------------------------ consensus_4154#0 GCTGCGAAGGCATCTCGGAGTGCATCGTGAAGCTGCTGATGGAGTACGCCAGCAACGTGC 1380 consensus_4154#1 ------------------------------------------------------------ consensus_4154#0 AGACGCCGATCGGGTGGAAGACGGTGCTTCACCTGCTGTCCGTCACCGGGCGGCACCCGG 1440 consensus_4154#1 ------------------------------------------------------------ consensus_4154#0 AGACGTTCGACCAGTCGGTGGCCGCCATGATCAAGCTCATGAACGACGGCGCGCAGGTGG 1500 consensus_4154#1 ------------------------------------------------------------ consensus_4154#0 TGACGCGGTTCAACTACGCGGCGTGCATCGAGGCCGCCTTCGGGTTCGCGGCGCTCAAGA 1560 consensus_4154#1 ------------------------------------------------------------ consensus_4154#0 TCAGCCCGCTCGACATCAGCACCAGGATCCTCCAGCTCATGGCCGACTCCGTCAACTGGC 1620 consensus_4154#1 ------------------------------------------------------------ consensus_4154#0 TCATTTTATGGCACAAGTCCGGCTACTCCGACCCGGGCAACGCCTGGAGCAGCTCAAGCT 1680 consensus_4154#1 ------------------------------------------------------------ consensus_4154#0 CGTCGTCGTCGGCGGCGGCGATGATGATGATGGAGGACGCGTCGCGGATGGGCAACCTGG 1740 consensus_4154#1 ------------------------------------------------------------ consensus_4154#0 CGACGAGCATGTTCATCAAGCTCGCGGAGGCGCTGCGCAAGACGAGCCTAGTCCGGCGAG 1800 consensus_4154#1 ------------------------------------------------------------ consensus_4154#0 AGGAGATACGGAACCAGGCGGTGGCGGAGCTGGGCCGAGCGTTCGCCCTGGCCGCCGCCG 1860 consensus_4154#1 ------------------------------------------------------------ consensus_4154#0 GCGAGCTCGAGCTGGGCCCGACGGGGTCGCTGGCGTGCTTCAACCTGGTCATCTTCGCCA 1920 consensus_4154#1 ------------------------------------------------------------ consensus_4154#0 TGGTGGACGACCTGCACGAGAAGACGCTGGAGTACTCGAGGAGGGAGGGGGCGGAGAGGG 1980 consensus_4154#1 ------------------------------------------------TTCTGGCTGGGG 12 ** *** consensus_4154#0 AGACCCGGAGCATGGAGGGGACGCTGGCGGCGGCGACGGAGCTGCTCGCCGACGTGTTCG 2040 consensus_4154#1 NTGCTCCGGC----GGCTGGACACGTGCATCAA-GTCGGACCTGGCGGCGGNCG------ 61 * * * * **** * ** * * **** *** ** * ** consensus_4154#0 TGCTGTTCCTGGCGTGATGCAGGAGCTGGTGCCGAGGATGCTGAAGCGGATGATCGTGGA 2100 consensus_4154#1 -GCGGCGCC-GGCGTGATGCAGGAGCTGGTGCCGAGGATGCTGAAGCGGATGATCGTGGA 119 ** * ** ************************************************** consensus_4154#0 GATGAAGGACAAGGGGGTGCTGGTCGCCATGGAAGGAGACGAGCTGTGGGAGATCACCCA 2160 consensus_4154#1 GATGAAGGACAAGGGGGTGCTGGTCGCCATGGAAGGAGACGAGCTGTGGGAGATCACCCA 179 ************************************************************ consensus_4154#0 CATCCAGATCCAGTGGATCGCTCCAGCTGTCATGGAGGAGCTCTTCCCTGATTGATTACT 2220 consensus_4154#1 CATCCAGATCCAGTGGATCGCTCCAGCTGTCATGGAGGAGCTCTTCCCTGATTGATTACT 239 ************************************************************ consensus_4154#0 CACTTACTCACTGCAGTTAATTACTAGTGTTATTAAGTTAGAGGTTACTCTGATAACCAA 2280 consensus_4154#1 CACTTACTCACTGCAGTTAATTACTAGTGTTATTAAGTTAGAGGTTACTCTGATAACCAA 299 ************************************************************ consensus_4154#0 TGTCATATATTAAAAAACGGAGACAGTATTATTGTTCAGTCTTTCTTTTTATTCTAACTA 2340 consensus_4154#1 TGTCATATATTAAAAAACGGAGACAGTATTATTGTTCAGTCTTTCTTTTTATTCTAACTA 359 ************************************************************ consensus_4154#0 GGAATGTACACATTACCTCTATAACCATCTACGAAAG----------------------- 2377 consensus_4154#1 GGAATGTACACATTACCTCTATAACCATCTACGAAAGACTATGGCTTAGTTTTGGACTAA 419 ************************************* consensus_4154#0 ----------------------------------- consensus_4154#1 AATTAGGAATCAAAGACTAATGAGACTTTTAAAAA 454 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||