These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4155#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 2092 fasta sequence [AGATCGACTTCGCCCCGCCCCGCCCCGCCGCCTTCCTCCGCCGCCGATCTCCATCCCGCGAGGGTGAAGCAGCGTTGCCGGCGTCGTCCCCCTCCTGCTCACTTCCTCTTCCTTCCGCTCGCCGCCGGGGGCGCGCTCTCTCTGATGGTGATGGATCCCCTTACCAACAAGGCTGCCTTCAGTGGCCTGAGACAGTATGTGAAGGAGCTTGATTCGAACACGCTCCCGCCATTTCTTGCCCGCGTTTGTGACCCCGTGAAGCCATGCTCCTTCTCCGAGGAGGAGATGCTGTGCATCTTCGAGACCGCCGCGCAAGCGCACGGCCGCAAGATTGTGCCGCACATCGCCCTGATCGTCTCGGCAATCGTTAGGATGATGTCCTCGCGGAATGCCGTTGGTTGCTCCAAGGTTGTTTGCGCGCTATCGCGGNACGTTGTTGATCCTCTGGCGACGGAAGCGTTGAAAAGCGCGATCATTGGCTCGCTTTGTCGTCCCTTTGCAGATTGTCTGATGAGCACTAAGGTGGAGAGCAACTCTTTTGGCTCTGCTCTTTGTGTCGCCGCGCTTGTGCAATCCAACAACTGGCGGTTTGCGTCTAACGAGCTGGTTAATGATGTCTGCTTGAAAGTCTCAGGGGCCCTAGAGGAGGCGCATGCTCAGAGTATCGCGCACTTAAACTTGGTGGTTGTTTTGCTGACACAAAATCCACTGATGCTTGAGCCTTATGGCCGATCTTTGATTCGATCGGGCTTACAGATACTGGATGAGAGTGCTAAGGCAAGCAGTTCTCAGATGATTATTTCATCGATTCAAATGATACATTCCATCATGAAGGGTTTGGATCTAGGCATTATATCTTCTGAGATCAGTAGTATTATCCATGCTATGGAACAATTCCAGGACGACACTATGCCAGCCATCAGCATTGCAGCTTTCGAGGCATCTGAGACTGCTAAGCTACTTGTTGGCAGGCAAAAAGAGAGTGGGCATGACAATAATTTGAGTCAGTTAGCAAACTATTCTGTAAGAAATGGCAGAAAGGGTTCATATTCACATTCTCTCATGGATGATGCGGATATCAGAGACGATGGTTCATGTGATTCACATTCTTGTGACCTGAACTCTGTTCATTTGTCTACTGATTTTGATTCTCAACATTCAGTGGGACAATGTGGTTCTGGAAGCACACGTGCAAGGCGGCAGCTATGGTGTAACAAATCTGACAAATCACATGGAATGTCCAATCATGACTTATTTCGCACTGTTATTCCAGATAGTCATGAGGCTTCAGGTTTGATGGCACATTTCAGCTCTGTTGATCCAATTAAGCCAGACAGGAGGTTGTCAGATGTGCCAACAAGAGTTGCTGGCCCATGTTATGTCTGTTCAGCAGCGCATGAAACGAATCACTGCTCTCAGATATCCAGGGCACAGGTTTTATCAGGTGACATGAGGATGAATTCTACTCCAAGAAAGCAACTCCATTCTTGCACCTTCTGTAGAGACCCAGAACAAGATGGTCACCCACCACTTGAAAGTCCAGCTATACAACACTGCTCAGGGCCAGGTACTAATATTCTTCAGTTCAGAAAAAACAGTGAGCTTAAGGAAAGAAAAGAATTTTGGGACTCAATTCGGCAGGAAAATCAATGCCATATGCAAAACACTGATGCCCTAATAGAAGATTTGAAGTTCCCGGCTGACGATGATGATGAGGATTTTGATGGTGCAGCCAAATCTCCATGTCAAGAATGTCAAGCTGTGAATGAGAAGAAGACTGGAGGCAAGAAAAGAAATGCAAACAGTTCTCACTATCCAGTTTTTCTTTTCGTTTTTGTTGTGGCAATCATTGCTCTCTTCTTTCCTTGGTGGAAGGACTACAAAGAGCCTTATGTTGTTCCTACATAAACATATCTGTTTGTTTTGCGATGTGCATCAAGCCATCCGTTTTTTCAGGAATTGTATGGTGGCAATCTTTAGTATACAGAAATTATAGGCAGCAGTTTACATGGATGACTTTGAATGGTGTAAATTCTGTGATAAGGTGATGGAATGGTTAAAAAGTTGTACCATTTCTGGATGTACTTTTCTC] [+] EMBL AU184131 [AGATCGACTTCGCCCCGCCCCGCCCCGCCGCCTTCCTCCGCCGCCGATCTCCATCCCGCGAGGGTGAAGCAGCGTTGCCGGCGTCGTCCCCCTCCTGCTCACTTCCTCTTCCTTCCGCTCGCCGCCGGGGGCGCGCTCTCTCTGATGGTGATGGATCCCCTTACCAACAAGGCTGCCTTCAGTGGCCTGAGACAGTATGTGAAGGAGCTTGATTCGAACACGCTCCCGCCATTTCTTGCCCGCGTTTGTGACCCCGTGAAGCCATGCTCCTTCTCCGAGGAGGAGATGCTGTGCATCTTCGAGACCGCCGCGCAAGCGCACGGCCGCAAGATTGTGCCGCACATCGCCCTGATCGTCTCGGCAATCGTTAGGATGATGTCCTCGCGGAATGCCGTTGGTTGCTCCAAGGTTGTTTGCGCGCTATCGCGGNACGTT ] [+] EMBL AK103828 [ GTTGCCGGCGTCGTCCCCCTCCTGCTCACTTCCTCTTCCTTCCGCTCGCCGCCGGGGGCGCGCTCTCTCTGATGGTGATGGATCCCCTTACCAACAAGGCTGCCTTCAGTGGCCTGAGACAGTATGTGAAGGAGCTTGATTCGAACACGCTCCCGCCATTTCTTGCCCGCGTTTGTGACCCCGTGAAGCCATGCTCCTTCTCCGAGGAGGAGATGCTGTGCATCTTCGAGACCGCCGCGCAAGCGCACGGCCGCAAGATTGTGCCGCACATCGCCCTGATCGTCTCGGCAATCGTTAGGATGATGTCCTCGCGGAATGCCGTTGGTTGCTCCAAGGTTGTTTGCGCGCTATCGCGGTACGTTGTTGATCCTCTGGCGACGGAAGCGTTGAAAAGCGCGATCATTGGCTCGCTTTGTCGTCCCTTTGCAGATTGTCTGATGAGCACTAAGGTGGAGAGCAACTCTTTTGGCTCTGCTCTTTGTGTCGCCGCGCTTGTGCAATCCAACAACTGGCGGTTTGCGTCTAACGAGCTGGTTAATGATGTCTGCTTGAAAGTCTCAGGGGCCCTAGAGGAGGCGCATGCTCAGAGTATCGCGCACTTAAACTTGGTGGTTGTTTTGCTGACACAAAATCCACTGATGCTTGAGCCTTATGGCCGATCTTTGATTCGATCGGGCTTACAGATACTGGATGAGAGTGCTAAGGCAAGCAGTTCTCAGATGATTATTTCATCGATTCAAATGATACATTCCATCATGAAGGGTTTGGATCTAGGCATTATATCTTCTGAGATCAGTAGTATTATCCATGCTATGGAACAATTCCAGGACGACACTATGCCAGCCATCAGCATTGCAGCTTTCGAGGCATCTGAGACTGCTAAGCTACTTGTTGGCAGGCAAAAAGAGAGTGGGCATGACAATAATTTGAGTCAGTTAGCAAACTATTCTGTAAGAAATGGCAGAAAGGGTTCATATTCACATTCTCTCATGGATGATGCGGATATCAGAGACGATGGTTCATGTGATTCACATTCTTGTGACCTGAACTCTGTTCATTTGTCTACTGATTTTGATTCTCAACATTCAGTGGGACAATGTGGTTCTGGAAGCACACGTGCAAGGCGGCAGCTATGGTGTAACAAATCTGACAAATCACATGGAATGTCCAATCATGACTTATTTCGCACTGTTATTCCAGATAGTCATGAGGCTTCAGGTTTGATGGCACATTTCAGCTCTGTTGATCCAATTAAGCCAGACAGGAGGTTGTCAGATGTGCCAACAAGAGTTGCTGGCCCATGTTATGTCTGTTCAGCAGCGCATGAAACGAATCACTGCTCTCAGATATCCAGGGCACAGGTTTTATCAGGTGACATGAGGATGAATTCTACTCCAAGAAAGCAACTCCATTCTTGCACCTTCTGTAGAGACCCAGAACAAGATGGTCACCCACCACTTGAAAGTCCAGCTATACAACACTGCTCAGGGCCAGGTACTAATATTCTTCAGTTCAGAAAAAACAGTGAGCTTAAGGAAAGAAAAGAATTTTGGGACTCAATTCGGCAGGAAAATCAATGCCATATGCAAAACACTGATGCCCTAATAGAAGATTTGAAGTTCCCGGCTGACGATGATGATGAGGATTTTGATGGTGCAGCCAAATCTCCATGTCAAGAATGTCAAGCTGTGAATGAGAAGAAGACTGGAGGCAAGAAAAGAAATGCAAACAGTTCTCACTATCCAGTTTTTCTTTTCGTTTTTGTTGTGGCAATCATTGCTCTCTTCTTTCCTTGGTGGAAGGACTACAAAGAGCCTTATGTTGTTCCTACATAAACATATCTGTTTGTTTTGCGATGTGCATCAAGCCATCCGTTTTTTCAGGAATTGTATGGTGGCAATCTTTAGTATACAGAAATTATAGGCAGCAGTTTACATGGATGACTTTGAATGGTGTAAATTCTGTGATAAGGTGATGGAATGGTTAAAAAGTTGTACCATTTCTGGATGTACTTTTCTC] consensusID : consensus_4155#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 694 fasta sequence [AGCGCATGAAACGAATCNCTGCTCTCAGATATCCAGGGCACAGGTTTTATCAGGTGACATGAGGATGAATTCTACTCCAAGAAAGCAACTCCATTCTTGCACCTTCTGTAGAGACCCAGAACAAGATGGTCACCCACCACTTGAAAGTCCAGCTATACAACACTGCTCAGGGCCAGGTACTAATATTCTTCAGTTCAGAAAAAACAGTGAGCTTAAGGAAAGAAAAGAATTTTGGGACTCAATTCGGCAGGAAAATCAATGCCATATGCAAAACACTGATGCCCTAATAGAAGATTTGAAGTTCCCGGCTGACGATGATGATGAGGATTTTGATGGTGCAGCCAAATCTCCATGTCAAGAATGTCAAGCTGTGAATGAGAAGAAGACTGGAGGCAAGAAAAGAAATGCAAACCGTTCTCACTATCCAGTTTTTCTTTTCGTTTTTGTTGTGGCAATCATTGCTCTCTTCTTTCCTTGGTGGAAGGACTACAAAGAGCCTTATGTTGTTCCTACATAAACATATCTGTTTGTTTTGCGATGTGCATCAAGCCATCCGTTTTTTCAGGAATTGTATGGTGGCAATCTTTAGTATACAGAAATTATAGGCAGCAGTTTACATGGATGACTTTGAATGGTGTAAATTCTGTGATAAGGTGATGGAATGGTTAAAAAGTTGTTCCAAAAAAAAAAAAAA] [-] EMBL CA761094 [AGCGCATGAAACGAATCNCTGCTCTCAGATATCCAGGGCACAGGTTTTATCAGGTGACATGAGGATGAATTCTACTCCAAGAAAGCAACTCCATTCTTGCACCTTCTGTAGAGACCCAGAACAAGATGGTCACCCACCACTTGAAAGTCCAGCTATACAACACTGCTCAGGGCCAGGTACTAATATTCTTCAGTTCAGAAAAAACAGTGAGCTTAAGGAAAGAAAAGAATTTTGGGACTCAATTCGGCAGGAAAATCAATGCCATATGCAAAACACTGATGCCCTAATAGAAGATTTGAAGTTCCCGGCTGACGATGATGATGAGGATTTTGATGGTGCAGCCAAATCTCCATGTCAAGAATGTCAAGCTGTGAATGAGAAGAAGACTGGAGGCAAGAAAAGAAATGCAAACCGTTCTCACTATCCAGTTTTTCTTTTCGTTTTTGTTGTGGCAATCATTGCTCTCTTCTTTCCTTGGTGGAAGGACTACAAAGAGCCTTATGTTGTTCCTACATAAACATATCTGTTTGTTTTGCGATGTGCATCAAGCCATCCGTTTTTTCAGGAATTGTATGGTGGCAATCTTTAGTATACAGAAATTATAGGCAGCAGTTTACATGGATGACTTTGAATGGTGTAAATTCTGTGATAAGGTGATGGAATGGTTAAAAAGTTGTTCCAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4155#0 AGATCGACTTCGCCCCGCCCCGCCCCGCCGCCTTCCTCCGCCGCCGATCTCCATCCCGCG 60 consensus_4155#1 ------------------------------------------------------------ consensus_4155#0 AGGGTGAAGCAGCGTTGCCGGCGTCGTCCCCCTCCTGCTCACTTCCTCTTCCTTCCGCTC 120 consensus_4155#1 ------------------------------------------------------------ consensus_4155#0 GCCGCCGGGGGCGCGCTCTCTCTGATGGTGATGGATCCCCTTACCAACAAGGCTGCCTTC 180 consensus_4155#1 ------------------------------------------------------------ consensus_4155#0 AGTGGCCTGAGACAGTATGTGAAGGAGCTTGATTCGAACACGCTCCCGCCATTTCTTGCC 240 consensus_4155#1 ------------------------------------------------------------ consensus_4155#0 CGCGTTTGTGACCCCGTGAAGCCATGCTCCTTCTCCGAGGAGGAGATGCTGTGCATCTTC 300 consensus_4155#1 ------------------------------------------------------------ consensus_4155#0 GAGACCGCCGCGCAAGCGCACGGCCGCAAGATTGTGCCGCACATCGCCCTGATCGTCTCG 360 consensus_4155#1 ------------------------------------------------------------ consensus_4155#0 GCAATCGTTAGGATGATGTCCTCGCGGAATGCCGTTGGTTGCTCCAAGGTTGTTTGCGCG 420 consensus_4155#1 ------------------------------------------------------------ consensus_4155#0 CTATCGCGGNACGTTGTTGATCCTCTGGCGACGGAAGCGTTGAAAAGCGCGATCATTGGC 480 consensus_4155#1 ------------------------------------------------------------ consensus_4155#0 TCGCTTTGTCGTCCCTTTGCAGATTGTCTGATGAGCACTAAGGTGGAGAGCAACTCTTTT 540 consensus_4155#1 ------------------------------------------------------------ consensus_4155#0 GGCTCTGCTCTTTGTGTCGCCGCGCTTGTGCAATCCAACAACTGGCGGTTTGCGTCTAAC 600 consensus_4155#1 ------------------------------------------------------------ consensus_4155#0 GAGCTGGTTAATGATGTCTGCTTGAAAGTCTCAGGGGCCCTAGAGGAGGCGCATGCTCAG 660 consensus_4155#1 ------------------------------------------------------------ consensus_4155#0 AGTATCGCGCACTTAAACTTGGTGGTTGTTTTGCTGACACAAAATCCACTGATGCTTGAG 720 consensus_4155#1 ------------------------------------------------------------ consensus_4155#0 CCTTATGGCCGATCTTTGATTCGATCGGGCTTACAGATACTGGATGAGAGTGCTAAGGCA 780 consensus_4155#1 ------------------------------------------------------------ consensus_4155#0 AGCAGTTCTCAGATGATTATTTCATCGATTCAAATGATACATTCCATCATGAAGGGTTTG 840 consensus_4155#1 ------------------------------------------------------------ consensus_4155#0 GATCTAGGCATTATATCTTCTGAGATCAGTAGTATTATCCATGCTATGGAACAATTCCAG 900 consensus_4155#1 ------------------------------------------------------------ consensus_4155#0 GACGACACTATGCCAGCCATCAGCATTGCAGCTTTCGAGGCATCTGAGACTGCTAAGCTA 960 consensus_4155#1 ------------------------------------------------------------ consensus_4155#0 CTTGTTGGCAGGCAAAAAGAGAGTGGGCATGACAATAATTTGAGTCAGTTAGCAAACTAT 1020 consensus_4155#1 ------------------------------------------------------------ consensus_4155#0 TCTGTAAGAAATGGCAGAAAGGGTTCATATTCACATTCTCTCATGGATGATGCGGATATC 1080 consensus_4155#1 ------------------------------------------------------------ consensus_4155#0 AGAGACGATGGTTCATGTGATTCACATTCTTGTGACCTGAACTCTGTTCATTTGTCTACT 1140 consensus_4155#1 ------------------------------------------------------------ consensus_4155#0 GATTTTGATTCTCAACATTCAGTGGGACAATGTGGTTCTGGAAGCACACGTGCAAGGCGG 1200 consensus_4155#1 ------------------------------------------------------------ consensus_4155#0 CAGCTATGGTGTAACAAATCTGACAAATCACATGGAATGTCCAATCATGACTTATTTCGC 1260 consensus_4155#1 ------------------------------------------------------------ consensus_4155#0 ACTGTTATTCCAGATAGTCATGAGGCTTCAGGTTTGATGGCACATTTCAGCTCTGTTGAT 1320 consensus_4155#1 ------------------------------------------------------------ consensus_4155#0 CCAATTAAGCCAGACAGGAGGTTGTCAGATGTGCCAACAAGAGTTGCTGGCCCATGTTAT 1380 consensus_4155#1 ------------------------------------------------------------ consensus_4155#0 GTCTGTTCAGCAGCGCATGAAACGAATCACTGCTCTCAGATATCCAGGGCACAGGTTTTA 1440 consensus_4155#1 -----------AGCGCATGAAACGAATCNCTGCTCTCAGATATCCAGGGCACAGGTTTTA 49 ***************** ******************************* consensus_4155#0 TCAGGTGACATGAGGATGAATTCTACTCCAAGAAAGCAACTCCATTCTTGCACCTTCTGT 1500 consensus_4155#1 TCAGGTGACATGAGGATGAATTCTACTCCAAGAAAGCAACTCCATTCTTGCACCTTCTGT 109 ************************************************************ consensus_4155#0 AGAGACCCAGAACAAGATGGTCACCCACCACTTGAAAGTCCAGCTATACAACACTGCTCA 1560 consensus_4155#1 AGAGACCCAGAACAAGATGGTCACCCACCACTTGAAAGTCCAGCTATACAACACTGCTCA 169 ************************************************************ consensus_4155#0 GGGCCAGGTACTAATATTCTTCAGTTCAGAAAAAACAGTGAGCTTAAGGAAAGAAAAGAA 1620 consensus_4155#1 GGGCCAGGTACTAATATTCTTCAGTTCAGAAAAAACAGTGAGCTTAAGGAAAGAAAAGAA 229 ************************************************************ consensus_4155#0 TTTTGGGACTCAATTCGGCAGGAAAATCAATGCCATATGCAAAACACTGATGCCCTAATA 1680 consensus_4155#1 TTTTGGGACTCAATTCGGCAGGAAAATCAATGCCATATGCAAAACACTGATGCCCTAATA 289 ************************************************************ consensus_4155#0 GAAGATTTGAAGTTCCCGGCTGACGATGATGATGAGGATTTTGATGGTGCAGCCAAATCT 1740 consensus_4155#1 GAAGATTTGAAGTTCCCGGCTGACGATGATGATGAGGATTTTGATGGTGCAGCCAAATCT 349 ************************************************************ consensus_4155#0 CCATGTCAAGAATGTCAAGCTGTGAATGAGAAGAAGACTGGAGGCAAGAAAAGAAATGCA 1800 consensus_4155#1 CCATGTCAAGAATGTCAAGCTGTGAATGAGAAGAAGACTGGAGGCAAGAAAAGAAATGCA 409 ************************************************************ consensus_4155#0 AACAGTTCTCACTATCCAGTTTTTCTTTTCGTTTTTGTTGTGGCAATCATTGCTCTCTTC 1860 consensus_4155#1 AACCGTTCTCACTATCCAGTTTTTCTTTTCGTTTTTGTTGTGGCAATCATTGCTCTCTTC 469 *** ******************************************************** consensus_4155#0 TTTCCTTGGTGGAAGGACTACAAAGAGCCTTATGTTGTTCCTACATAAACATATCTGTTT 1920 consensus_4155#1 TTTCCTTGGTGGAAGGACTACAAAGAGCCTTATGTTGTTCCTACATAAACATATCTGTTT 529 ************************************************************ consensus_4155#0 GTTTTGCGATGTGCATCAAGCCATCCGTTTTTTCAGGAATTGTATGGTGGCAATCTTTAG 1980 consensus_4155#1 GTTTTGCGATGTGCATCAAGCCATCCGTTTTTTCAGGAATTGTATGGTGGCAATCTTTAG 589 ************************************************************ consensus_4155#0 TATACAGAAATTATAGGCAGCAGTTTACATGGATGACTTTGAATGGTGTAAATTCTGTGA 2040 consensus_4155#1 TATACAGAAATTATAGGCAGCAGTTTACATGGATGACTTTGAATGGTGTAAATTCTGTGA 649 ************************************************************ consensus_4155#0 TAAGGTGATGGAATGGTTAAAAAGTTGTACCATTTCTGGATGTACTTTTCTC 2092 consensus_4155#1 TAAGGTGATGGAATGGTTAAAAAGTTGTTCCAAAAAAAAAAAAAA------- 694 **************************** *** * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||