These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4165#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1592 fasta sequence [CATTTTTTTCCCGTTCAAAAAAAAATATTGACATTTTTTTCCCCAACTGCCGGCGATATGGCCGCTACGGCCGCCTCCTCCCTGTCCGCCGCCGCCGCCGCCGCTCGCCGGAGCTTCCCCTCCCGCCTCCGACTCCTAGCACGCCGCCGCCGCCTCCCGTTCTCGTCCACCGCCTCCTTCTCCGCCGCTGCGCCACCGGCTGCCGCGGCGAGCTTCGGCTGGGAGGACGCCCTCCGGGTCGCCGCCGACGACCGGCGGGGCGACGAGTCCGACCTCTCCGGGTACTCCCGGAAGGTCGACACCTGCAACCGAGGAATGGACAAGAAGGGGGAGTTCGTGGCGTTCATGGTGGAGGATCAGGTTGTGGGGTATATCCACCAAGGTTTTGTTGAACATCTAAGAGACTTCCGTGATGTTTTTACCATTGCCTCGGGCAGCAATGGAAGCAATAATGTTGAACATGTGACTCTCCATTCATCTCTAAGGACTCCAGATGAACGAACAAATGCTGTTGGAAGTGTCATAAGAAGTCTAGGAGATCTGATTCCAGGTATTCGAAATGAGCTCTATCCAATAACATCATCTTATGGCATGCCTGTGTACTTCTCTCTGGAACGTGCTGCTGCCCCCTACTTTGGCTTATGGAGTTCATATGAATGGGTATGTTGAGAAGGAGGGCCAGAAATTTCTTTGGATTGCTAAGAGAAGTGATACGAAGCAGACCTTTCCAGGAATGCTTGATCATCTTGTTGCAGGTGGCCTGCCATATGGAATCTCCTGTGAAGAGAATGTTATCAAGGAATGTGAAGAGGAAGCAGGAATCCCAAGATCCATTTCAAGCAATGCTACCTCTGTTGGAGCGATCTCTTACATGGATATTGAAGGGTTTAGATACAAAAGGGATGTTCTCTTCTGTTATGACCTTAAACTTCCTCCAGATTTTGTTCCTAATAATGAAGATGGAGAGGTTGGTAGCTTCAGATTAATCCCTGTACCACATGCTGCAAATATTATCCGGAGGACACATTTTTTCAAGCCAAATTGCAACCTTGTGATTATTGACTTCCTCTTCCGTCATGGGTATATAAACCCAGATTACCATGGCTACCTAAAGCTGCTGCAAAGCTTGAGGAGAGGTGATTGCTCGTAGTGCTGCCTTCAGTTCAGACTGATTATGAGGATTTTAAATTCAAGACTTTACTCTGTCAAGTGCTTTCATCTCCTCCAGTGATCACTGTTTGTAATCACATTTGTCGAGCATTGGTTCAGATTCTTGAAAACCTTAACCTCCATGGCTCCATATGCATACAATCTGAAGCATCAACGGTGGCTCGGATTATCCAACTAGCAAGTGCAAATGTTTGCTTGATATTTGATTTTTGCCAAACAAGTTCGGGTGTTTGATTTGCTTCAGCGAATTTGTGATGATGGACACCAGGCGTTGCGGAAGGTGGATCACATGGCATGGAACCATGGATGGATAGTTCGTCCCTTATCCTGTCTCTTTTTTTTTTTTTCTGGAAAACAGAGGATAGTACTGGATTTGAGTATGAACATAAATAGTGAGGGAATATGAATTCATATATGGAGGA] [+] EMBL AK067539 [CATTTTTTTCCCGTTCAAAAAAAAATATTGACATTTTTTTCCCCAACTGCCGGCGATATGGCCGCTACGGCCGCCTCCTCCCTGTCCGCCGCCGCCGCCGCCGCTCGCCGGAGCTTCCCCTCCCGCCTCCGACTCCTAGCACGCCGCCGCCGCCTCCCGTTCTCGTCCACCGCCTCCTTCTCCGCCGCTGCGCCACCGGCTGCCGCGGCGAGCTTCGGCTGGGAGGACGCCCTCCGGGTCGCCGCCGACGACCGGCGGGGCGACGAGTCCGACCTCTCCGGGTACTCCCGGAAGGTCGACACCTGCAACCGAGGAATGGACAAGAAGGGGGAGTTCGTGGCGTTCATGGTGGAGGATCAGGTTGTGGGGTATATCCACCAAGGTTTTGTTGAACATCTAAGAGACTTCCGTGATGTTTTTACCATTGCCTCGGGCAGCAATGGAAGCAATAATGTTGAACATGTGACTCTCCATTCATCTCTAAGGACTCCAGATGAACGAACAAATGCTGTTGGAAGTGTCATAAGAAGTCTAGGAGATCTGATTCCAGGTATTCGAAATGAGCTCTATCCAATAACATCATCTTATGGCATGCCTGTGTACTTCTCTCTGGAACGTGCTGCTGCCCCCTACTTTGGCTTATGGAGTTCATATGAATGGGTATGTTGAGAAGGAGGGCCAGAAATTTCTTTGGATTGCTAAGAGAAGTGATACGAAGCAGACCTTTCCAGGAATGCTTGATCATCTTGTTGCAGGTGGCCTGCCATATGGAATCTCCTGTGAAGAGAATGTTATCAAGGAATGTGAAGAGGAAGCAGGAATCCCAAGATCCATTTCAAGCAATGCTACCTCTGTTGGAGCGATCTCTTACATGGATATTGAAGGGTTTAGATACAAAAGGGATGTTCTCTTCTGTTATGACCTTAAACTTCCTCCAGATTTTGTTCCTAATAATGAAGATGGAGAGGTTGGTAGCTTCAGATTAATCCCTGTACCACATGCTGCAAATATTATCCGGAGGACACATTTTTTCAAGCCAAATTGCAACCTTGTGATTATTGACTTCCTCTTCCGTCATGGGTATATAAACCCAGATTACCATGGCTACCTAAAGCTGCTGCAAAGCTTGAGGAGAGGTGATTGCTCGTAGTGCTGCCTTCAGTTCAGACTGATTATGAGGATTTTAAATTCAAGACTTTACTCTGTCAAGTGCTTTCATCTCCTCCAGTGATCACTGTTTGTAATCACATTTGTCGAGCATTGGTTCAGATTCTTGAAAACCTTAACCTCCATGGCTCCATATGCATACAATCTGAAGCATCAACGGTGGCTCGGATTATCCAACTAGCAAGTGCAAATGTTTGCTTGATATTTGATTTTTGCCAAACAAGTTCGGGTGTTTGATTTGCTTCAGCGAATTTGTGATGATGGACACCAGGCGTTGCGGAAGGTGGATCACATGGCATGGAACCATGGATGGATAGTTCGTCCCTTATCCTGTCTCTTTTTTTTTTTTTCTGGAAAACAGAGGATAGTACTGGATTTGAGTATGAACATAAATAGTGAGGGAATATGAATTCATATATGGAGGA] consensusID : consensus_4165#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 668 fasta sequence [CTCCCATATGGAATCTCCTGTGAAGAGAATGTTATCAAGGAATGTGAAGAGGAAGCAGGAATCCCAAGATCCATTTCAAGCAATGCTACCTCTGTTGGAGCCATTTCTTACATGGATATTGAAGGGTTTAGATACAAAAGGGATGTTCTCTTCTGCTATGACCTTAAACTTCCTCCAGATTTTGTTCCTAATAATGAAGATGGAGAGGTTGATAGCTTCAGATTAATCCCTGTACCACATGCTGCAAATATTATCCGGAGGACACATTTTTTCAAGCCAAATTGCAACCTTGTGATTATTGACTTCCTCTTCCGCCATGGGTATATAAACCCAGATTACCTTGGCTACCTAAAGCTGCTGCAAAGCTTGAGGAGAGGTGATTGCTTGTAGTGCTGCCTTCAGTTCAGACTGATTATGAGGATCTTAAATTCAACCCTTTACTCTGTCAAGTGCTTTCATGTCCTCCAGTGATCGCAGTGTGTAATCACATTTGTCGAGCCTTGGTTCAGATTCTTGAAAACCTTAACCTCCATGGCTCCATACACATACAATCAGAAGAACCAACTGTGGCTAGGATTATCCAACTAGCAAGTGCAAATGCTTGCTTGATATTTGATTTTTGCCCAACAAGTTCAGTGTTTGATTTGCTTAAAAAAAAAAAAAAAAAA] [-] EMBL CA763332 [CTCCCATATGGAATCTCCTGTGAAGAGAATGTTATCAAGGAATGTGAAGAGGAAGCAGGAATCCCAAGATCCATTTCAAGCAATGCTACCTCTGTTGGAGCCATTTCTTACATGGATATTGAAGGGTTTAGATACAAAAGGGATGTTCTCTTCTGCTATGACCTTAAACTTCCTCCAGATTTTGTTCCTAATAATGAAGATGGAGAGGTTGATAGCTTCAGATTAATCCCTGTACCACATGCTGCAAATATTATCCGGAGGACACATTTTTTCAAGCCAAATTGCAACCTTGTGATTATTGACTTCCTCTTCCGCCATGGGTATATAAACCCAGATTACCTTGGCTACCTAAAGCTGCTGCAAAGCTTGAGGAGAGGTGATTGCTTGTAGTGCTGCCTTCAGTTCAGACTGATTATGAGGATCTTAAATTCAACCCTTTACTCTGTCAAGTGCTTTCATGTCCTCCAGTGATCGCAGTGTGTAATCACATTTGTCGAGCCTTGGTTCAGATTCTTGAAAACCTTAACCTCCATGGCTCCATACACATACAATCAGAAGAACCAACTGTGGCTAGGATTATCCAACTAGCAAGTGCAAATGCTTGCTTGATATTTGATTTTTGCCCAACAAGTTCAGTGTTTGATTTGCTTAAAAAAAAAAAAAAAAAA] consensusID : consensus_4165#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 567 fasta sequence [ACGAGACAAGGGGGTTGGAGCCATCTCTTACATGGATATTGAAGGGTTTAGATACAAAAGGGATGTTCTCTTTTGCTATGACCTTAAACTTCCTCCAGATTTTGTTCCTAATAATGAAGATGGAGAGGTTGATAGCTTCAGATTAATCCCTGTACCACATGCTGCAAATATTATCCGGAGGACACATTTTTTCAAGCCAAATTGCAACCTTGTGATTATTGACTTCCTCTTCCGTCATGGGTATATAAACCCAGATTACCTTGGCTACCTAAAGCTGCTGCAAAGCTTGAGGAGAGGTGACTGCTTGTAGTGCTGCCTTCAGTTCAGACTGATTATGAGGATTTTAAATTCAACCCTTTACTCTGTCAAGTGCTTTCATGTCCTCCAGTGATCGCAGTGTGTAATCCCATTTGTCGAGCCTTGGTTCAGATTCTTGAAAACCTTAACCTCCATGGCTCCATACACATACAATCAGAAGAACCAACTGTGGCTAGGATTATCCAACTAGCAAGTGCAAATGCTTGCTTGATATTTGATTTTTGCCCAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CA763361 [ACGAGACAAGGGGGTTGGAGCCATCTCTTACATGGATATTGAAGGGTTTAGATACAAAAGGGATGTTCTCTTTTGCTATGACCTTAAACTTCCTCCAGATTTTGTTCCTAATAATGAAGATGGAGAGGTTGATAGCTTCAGATTAATCCCTGTACCACATGCTGCAAATATTATCCGGAGGACACATTTTTTCAAGCCAAATTGCAACCTTGTGATTATTGACTTCCTCTTCCGTCATGGGTATATAAACCCAGATTACCTTGGCTACCTAAAGCTGCTGCAAAGCTTGAGGAGAGGTGACTGCTTGTAGTGCTGCCTTCAGTTCAGACTGATTATGAGGATTTTAAATTCAACCCTTTACTCTGTCAAGTGCTTTCATGTCCTCCAGTGATCGCAGTGTGTAATCCCATTTGTCGAGCCTTGGTTCAGATTCTTGAAAACCTTAACCTCCATGGCTCCATACACATACAATCAGAAGAACCAACTGTGGCTAGGATTATCCAACTAGCAAGTGCAAATGCTTGCTTGATATTTGATTTTTGCCCAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4165#1 ------------------------------------------------------------ consensus_4165#2 ------------------------------------------------------------ consensus_4165#0 CATTTTTTTCCCGTTCAAAAAAAAATATTGACATTTTTTTCCCCAACTGCCGGCGATATG 60 consensus_4165#1 ------------------------------------------------------------ consensus_4165#2 ------------------------------------------------------------ consensus_4165#0 GCCGCTACGGCCGCCTCCTCCCTGTCCGCCGCCGCCGCCGCCGCTCGCCGGAGCTTCCCC 120 consensus_4165#1 ------------------------------------------------------------ consensus_4165#2 ------------------------------------------------------------ consensus_4165#0 TCCCGCCTCCGACTCCTAGCACGCCGCCGCCGCCTCCCGTTCTCGTCCACCGCCTCCTTC 180 consensus_4165#1 ------------------------------------------------------------ consensus_4165#2 ------------------------------------------------------------ consensus_4165#0 TCCGCCGCTGCGCCACCGGCTGCCGCGGCGAGCTTCGGCTGGGAGGACGCCCTCCGGGTC 240 consensus_4165#1 ------------------------------------------------------------ consensus_4165#2 ------------------------------------------------------------ consensus_4165#0 GCCGCCGACGACCGGCGGGGCGACGAGTCCGACCTCTCCGGGTACTCCCGGAAGGTCGAC 300 consensus_4165#1 ------------------------------------------------------------ consensus_4165#2 ------------------------------------------------------------ consensus_4165#0 ACCTGCAACCGAGGAATGGACAAGAAGGGGGAGTTCGTGGCGTTCATGGTGGAGGATCAG 360 consensus_4165#1 ------------------------------------------------------------ consensus_4165#2 ------------------------------------------------------------ consensus_4165#0 GTTGTGGGGTATATCCACCAAGGTTTTGTTGAACATCTAAGAGACTTCCGTGATGTTTTT 420 consensus_4165#1 ------------------------------------------------------------ consensus_4165#2 ------------------------------------------------------------ consensus_4165#0 ACCATTGCCTCGGGCAGCAATGGAAGCAATAATGTTGAACATGTGACTCTCCATTCATCT 480 consensus_4165#1 ------------------------------------------------------------ consensus_4165#2 ------------------------------------------------------------ consensus_4165#0 CTAAGGACTCCAGATGAACGAACAAATGCTGTTGGAAGTGTCATAAGAAGTCTAGGAGAT 540 consensus_4165#1 ------------------------------------------------------------ consensus_4165#2 ------------------------------------------------------------ consensus_4165#0 CTGATTCCAGGTATTCGAAATGAGCTCTATCCAATAACATCATCTTATGGCATGCCTGTG 600 consensus_4165#1 ------------------------------------------------------------ consensus_4165#2 ------------------------------------------------------------ consensus_4165#0 TACTTCTCTCTGGAACGTGCTGCTGCCCCCTACTTTGGCTTATGGAGTTCATATGAATGG 660 consensus_4165#1 ------------------------------------------------------------ consensus_4165#2 ------------------------------------------------------------ consensus_4165#0 GTATGTTGAGAAGGAGGGCCAGAAATTTCTTTGGATTGCTAAGAGAAGTGATACGAAGCA 720 consensus_4165#1 ----------------------------------------CTCCCATATGGAATCTCCTG 20 consensus_4165#2 ------------------------------------------------------------ consensus_4165#0 GACCTTTCCAGGAATGCTTGATCATCTTGTTGCAGGTGGCCTGCCATATGGAATCTCCTG 780 consensus_4165#1 TGAAGAGAATGTTATCAAGGAATGTGAAGAGGAAGCAGGAATCCCAAGATCCATTTCAAG 80 consensus_4165#2 -----------------------------------------------------------A 1 consensus_4165#0 TGAAGAGAATGTTATCAAGGAATGTGAAGAGGAAGCAGGAATCCCAAGATCCATTTCAAG 840 consensus_4165#1 CAATGCTACCTCTGTTGGAGCCATTTCTTACATGGATATTGAAGGGTTTAGATACAAAAG 140 consensus_4165#2 CGAGACAAGGGG-GTTGGAGCCATCTCTTACATGGATATTGAAGGGTTTAGATACAAAAG 60 consensus_4165#0 CAATGCTACCTCTGTTGGAGCGATCTCTTACATGGATATTGAAGGGTTTAGATACAAAAG 900 * * * * ******** ** *********************************** consensus_4165#1 GGATGTTCTCTTCTGCTATGACCTTAAACTTCCTCCAGATTTTGTTCCTAATAATGAAGA 200 consensus_4165#2 GGATGTTCTCTTTTGCTATGACCTTAAACTTCCTCCAGATTTTGTTCCTAATAATGAAGA 120 consensus_4165#0 GGATGTTCTCTTCTGTTATGACCTTAAACTTCCTCCAGATTTTGTTCCTAATAATGAAGA 960 ************ ** ******************************************** consensus_4165#1 TGGAGAGGTTGATAGCTTCAGATTAATCCCTGTACCACATGCTGCAAATATTATCCGGAG 260 consensus_4165#2 TGGAGAGGTTGATAGCTTCAGATTAATCCCTGTACCACATGCTGCAAATATTATCCGGAG 180 consensus_4165#0 TGGAGAGGTTGGTAGCTTCAGATTAATCCCTGTACCACATGCTGCAAATATTATCCGGAG 1020 *********** ************************************************ consensus_4165#1 GACACATTTTTTCAAGCCAAATTGCAACCTTGTGATTATTGACTTCCTCTTCCGCCATGG 320 consensus_4165#2 GACACATTTTTTCAAGCCAAATTGCAACCTTGTGATTATTGACTTCCTCTTCCGTCATGG 240 consensus_4165#0 GACACATTTTTTCAAGCCAAATTGCAACCTTGTGATTATTGACTTCCTCTTCCGTCATGG 1080 ****************************************************** ***** consensus_4165#1 GTATATAAACCCAGATTACCTTGGCTACCTAAAGCTGCTGCAAAGCTTGAGGAGAGGTGA 380 consensus_4165#2 GTATATAAACCCAGATTACCTTGGCTACCTAAAGCTGCTGCAAAGCTTGAGGAGAGGTGA 300 consensus_4165#0 GTATATAAACCCAGATTACCATGGCTACCTAAAGCTGCTGCAAAGCTTGAGGAGAGGTGA 1140 ******************** *************************************** consensus_4165#1 TTGCTTGTAGTGCTGCCTTCAGTTCAGACTGATTATGAGGATCTTAAATTCAACCCTTTA 440 consensus_4165#2 CTGCTTGTAGTGCTGCCTTCAGTTCAGACTGATTATGAGGATTTTAAATTCAACCCTTTA 360 consensus_4165#0 TTGCTCGTAGTGCTGCCTTCAGTTCAGACTGATTATGAGGATTTTAAATTCAAGACTTTA 1200 **** ************************************ ********** ***** consensus_4165#1 CTCTGTCAAGTGCTTTCATGTCCTCCAGTGATCGCAGTGTGTAATCACATTTGTCGAGCC 500 consensus_4165#2 CTCTGTCAAGTGCTTTCATGTCCTCCAGTGATCGCAGTGTGTAATCCCATTTGTCGAGCC 420 consensus_4165#0 CTCTGTCAAGTGCTTTCATCTCCTCCAGTGATCACTGTTTGTAATCACATTTGTCGAGCA 1260 ******************* ************* * ** ******* ************ consensus_4165#1 TTGGTTCAGATTCTTGAAAACCTTAACCTCCATGGCTCCATACACATACAATCAGAAGAA 560 consensus_4165#2 TTGGTTCAGATTCTTGAAAACCTTAACCTCCATGGCTCCATACACATACAATCAGAAGAA 480 consensus_4165#0 TTGGTTCAGATTCTTGAAAACCTTAACCTCCATGGCTCCATATGCATACAATCTGAAGCA 1320 ****************************************** ********* **** * consensus_4165#1 CCAACTGTGGCTAGGATTATCCAACTAGCAAGTGCAAATGCTTGCTTGATATTTGATTTT 620 consensus_4165#2 CCAACTGTGGCTAGGATTATCCAACTAGCAAGTGCAAATGCTTGCTTGATATTTGATTTT 540 consensus_4165#0 TCAACGGTGGCTCGGATTATCCAACTAGCAAGTGCAAATGTTTGCTTGATATTTGATTTT 1380 **** ****** *************************** ******************* consensus_4165#1 TGCCCAACAAGTTCAG-TGTTTGATTTGCTTAAAAAAAAAAAAAAAAAA----------- 668 consensus_4165#2 TGCCCAAAAA---------------------AAAAAAAAAAAAAAAAA------------ 567 consensus_4165#0 TGCCAAACAAGTTCGGGTGTTTGATTTGCTTCAGCGAATTTGTGATGATGGACACCAGGC 1440 **** ** ** * ** * * consensus_4165#1 ------------------------------------------------------------ consensus_4165#2 ------------------------------------------------------------ consensus_4165#0 GTTGCGGAAGGTGGATCACATGGCATGGAACCATGGATGGATAGTTCGTCCCTTATCCTG 1500 consensus_4165#1 ------------------------------------------------------------ consensus_4165#2 ------------------------------------------------------------ consensus_4165#0 TCTCTTTTTTTTTTTTTCTGGAAAACAGAGGATAGTACTGGATTTGAGTATGAACATAAA 1560 consensus_4165#1 -------------------------------- consensus_4165#2 -------------------------------- consensus_4165#0 TAGTGAGGGAATATGAATTCATATATGGAGGA 1592 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||