Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 4173 cluster # 4173       Sequences # 3       consensus # 1

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4173#0 length = 1120 sequences # 3  
consensusID : consensus_4173#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1120
fasta sequence 
                              [CATCTCCGCTTCCGCGGCGCGAGCCACTCGTCGCTCGAATTGCCCCCATCCACACAGCTTCCCCCGCGCACGCGAGAGGGAGGAGCTCGTGGCGCCGGCGGCCATGGCCGGAGCAGCCGCGGCGAGCTCCGCCGCCTGCTCATCTCCGGCTCCGAACCCGACAACGCGATACCCGGTTAGGAGGCGCGTGCCGCGGCCTCCACTTGTGGCAGCCAGTCGTCACTGCACCGCTTCACCTTTTCCCACTACAATCTCCATCTCCAGCTCGGGTCTCGGCCAGGCTCGTCCTCGCGATCCGTTTCTAAACCCTCGCCTTCGATTTGCGGCTGCGGCGGCGGCGGCGGAGGGGGAGATGGCTGCGGAGGCGAGCGCCGCGGCGGCAGAGGGGGCGCAGGCGAAGCCCTTCTCCGTCCTCTTCGTCTGTCTCGGCAACATCTGTCGGAGCCCTGCAGCTGAGGCTGTGTTCCGGAACCTCGTGAGCAAGCGTGGGCTTGAGTCCAAGTTTCTCATAGACTCTGCTGGTACAATTGGTTACCATGAGGGTAACAAGGCAGACTCAAGGATGAGATCAGCTTCAAAGAAGAGGGGAATTGAGGTGACCTCCATATCCAGGCCTGTCAAACCCTCCGACTTCCGAGATTTTGATCTTATCCTTGCAATGGATAGGCAGAATTATGAAGACCTACTCAGTTCATTTGAGAGATGGAGACACAGGGAACCCCTCCCAGACAGTGGACCCAAGAAGGTTAAGTTGATGTGTTCCTATTGCAAGCGTCATACTGAGTCAGAAGTCCCAGATCCGTATTATGGAGGCCCTCAAGGATTTGAAAAGGTGCTGGATCTGCTGGAAGACGCATGCGAGTCATTACTTGACAGCATCGTGGCAGAGAATGCAAGCGTTTCTGCTTGATCTCAATGAAGCTATCTGGAGGCAATGTAAGCATCATTTTTTCTATGTAACCATGATCAGAATCTATCTATGCCATTTGATTGCGATTCAGATAACCAGAAACACTCACATCAGCATGCATGTACCCATGTTCATACAATGTCAGGCTGGAGACATATACTTATATCTTTCATGTACACCATGATTTACACTGTAATAAAATCACCAACT]

[+] EMBL AK060067             [CATCTCCGCTTCCGCGGCGCGAGCCACTCGTCGCTCGAATTGCCCCCATCCACACAGCTTCCCCCGCGCACGCGAGAGGGAGGAGCTCGTGGCGCCGGCGGCCATGGCCGGAGCAGCCGCGGCGAGCTCCGCCGCCTGCTCATCTCCGGCTCCGAACCCGACAACGCGATACCCGGTTAGGAGGCGCGTGCCGCGGCCTCCACTTGTGGCAGCCAGTCGTCACTGCACCGCTTCACCTTTTCCCACTACAATCTCCATCTCCAGCTCGGGTCTCGGCCAGGCTCGTCCTCGCGATCCGTTTCTAAACCCTCGCCTTCGATTTGCGGCTGCGGCGGCGGCGGCGGAGGGGGAGATGGCTGCGGAGGCGAGCGCCGCGGCGGCAGAGGGGGCGCAGGCGAAGCCCTTCTCCGTCCTCTTCGTCTGTCTCGGCAACATCTGTCGGAGCCCTGCAGCTGAGGCTGTGTTCCGGAACCTCGTGAGCAAGCGTGGGCTTGAGTCCAAGTTTCTCATAGACTCTGCTGGTACAATTGGTTACCATGAGGGTAACAAGGCAGACTCAAGGATGAGATCAGCTTCAAAGAAGAGGGGAATTGAGGTGACCTCCATATCCAGGCCTGTCAAACCCTCCGACTTCCGAGATTTTGATCTTATCCTTGCAATGGATAGGCAGAATTATGAAGACCTACTCAGTTCATTTGAGAGATGGAGACACAGGGAACCCCTCCCAGACAGTGGACCCAAGAAGGTTAAGTTGATGTGTTCCTATTGCAAGCGTCATACTGAGTCAGAAGTCCCAGATCCGTATTATGGAGGCCCTCAAGGATTTGAAAAGGTGCTGGATCTGCTGGAAGACGCATGCGAGTCATTACTTGACAGCATCGTGGCAGAGAATGCAAGCGTTTCTGCTTGATCTCAATGAAGCTATCTGGAGGCAATGTAAGCATCATTTTTTCTATGTAACCATGATCAGAATCTATCTATGCCATTTGATTGCGATTCAGATAACCAGAAACACTCACATCAGCATGCATGTACCCATGTTCATACAATGTCAGGCTGGAGACATATACTTATATCTTTCATGTACACCATGATTTACACTGTAATAAAATCACCAACT]
[+] EMBL AY224424             [                                                                                                                GCAGCCGCGGCGAGCTCCGCCGCCTGCTCATCTCCGGCTCCGAACCCGACAACGCGATACCCGGTTAGGAGGCGCGTGCCGCGGCCTCCACTTGTGGCAGCCAGTCGTCACTGCACCGCTTCACCTTTTCCCACTACAATCTCCATCTCCAGCTCGGGTCTCGGCCAGGCTCGTCCTCGCGATCCGTTTCTAAACCCTCGCCTTCGATTTGCGGCTGCGGCGGCGGCGGCGGAGGGGGAGATGGCTGCGGAGGCGAGCGCCGCGGCGGCAGAGGGGGCGCAGGCGAAGCCCTTCTCCGTCCTCTTCGTCTGTCTCGGCAACATCTGTCGGAGCCCTGCAGCTGAGGCTGTGTTCCGGAACCTCGTGAGCAAGCGTGGGCTTGAGTCCAAGTTTCTCATAGACTCTGCTGGTACAATTGGTTACCATGAGGGTAACAAGGCAGACTCAAGGATGAGATCAGCTTCAAAGAAGAGGGGAATTGAGGTGACCTCCATATCCAGGCCTGTCAAACCCTCCGACTTCCGAGATTTTGATCTTATCCTTGCAATGGATAGGCAGAATTATGAAGACCTACTCAGTTCATTTGAGAGATGGAGACACAGGGAACCCCTCCCAGACAGTGGACCCAAGAAGGTTAAGTTGATGTGTTCCTATTGCAAGCGTCATACTGAGTCAGAAGTCCCAGATCCGTATTATGGAGGCCCTCAAGGATTTGAAAAGGTGCTGGATCTGCTGGAAGACGCATGCGAGTCATTACTTGACAGCATCGTGGCAGAGAATGCAAGCGT                                                                                                                                                                                                                            ]
[-] EMBL CB679587             [                                                                                                                                                                                                                                                                                                                                                                                  GCCGCGGCGGCAGAGGGGGCGCAGGCGAAGCCCTTCTCCGTCCTCTTCGTCTGTCTCGGCAACATCTGTCGGAGCCCTGCAGCTGAGGCTGTGTTCCGGAACCTCGTGAGCAAGCGTGGGCTTGAGTCCAAGTTTCTCATAGACTCTGCTGGTACAATTGGTTACCATGAGGGTAACAAGGCAGACTCAAGGATGAGATCAGCTTCAAAGAAGAGGGGAATTGAGGTGACCTCCATATCCAGGCCTGTCAAACCCTCCGACTTCCGAGATTTTGATCTTATCCTTGCAATGGATAGGCAGAATTATGAAGACCTACTCAGTTCATTTGAGAGATGGAGACACAGGGAACCCCTCCCAGACAGTGGACCCAAGAAGGTTAAGTTGATGTGTTCCTATTGCAAGCGTCATACTGAGTCAGAAGTCCCAGATCCGTATTATGGAGGCCCTCAAGGATTTGAAAAGGTGCTGGATCTGCTGGAAGACGCATGCGAGTCATTACTTGACAGCATCGTGGCAGAGAATGCAAGCGTTTCTGCTTGATCTCAATGAAGCTATCTGGAGGCAATGTAAGCATCATTTTTTCTATGTAACCATGATCAGAATCTATCTATGCCATTTGATTGCGATTCAGATAACCAGAAACACTCACATCAGCATGCATGTACCCATGTTCATACAATGTCAGGCTGGAGACATATACTTATATCTTTCATGTACCCCATGCTTTAaaagg                 ]




>consensus_4173#0
CATCTCCGCTTCCGCGGCGCGAGCCACTCGTCGCTCGAATTGCCCCCATCCACACAGCTT
CCCCCGCGCACGCGAGAGGGAGGAGCTCGTGGCGCCGGCGGCCATGGCCGGAGCAGCCGC
GGCGAGCTCCGCCGCCTGCTCATCTCCGGCTCCGAACCCGACAACGCGATACCCGGTTAG
GAGGCGCGTGCCGCGGCCTCCACTTGTGGCAGCCAGTCGTCACTGCACCGCTTCACCTTT
TCCCACTACAATCTCCATCTCCAGCTCGGGTCTCGGCCAGGCTCGTCCTCGCGATCCGTT
TCTAAACCCTCGCCTTCGATTTGCGGCTGCGGCGGCGGCGGCGGAGGGGGAGATGGCTGC
GGAGGCGAGCGCCGCGGCGGCAGAGGGGGCGCAGGCGAAGCCCTTCTCCGTCCTCTTCGT
CTGTCTCGGCAACATCTGTCGGAGCCCTGCAGCTGAGGCTGTGTTCCGGAACCTCGTGAG
CAAGCGTGGGCTTGAGTCCAAGTTTCTCATAGACTCTGCTGGTACAATTGGTTACCATGA
GGGTAACAAGGCAGACTCAAGGATGAGATCAGCTTCAAAGAAGAGGGGAATTGAGGTGAC
CTCCATATCCAGGCCTGTCAAACCCTCCGACTTCCGAGATTTTGATCTTATCCTTGCAAT
GGATAGGCAGAATTATGAAGACCTACTCAGTTCATTTGAGAGATGGAGACACAGGGAACC
CCTCCCAGACAGTGGACCCAAGAAGGTTAAGTTGATGTGTTCCTATTGCAAGCGTCATAC
TGAGTCAGAAGTCCCAGATCCGTATTATGGAGGCCCTCAAGGATTTGAAAAGGTGCTGGA
TCTGCTGGAAGACGCATGCGAGTCATTACTTGACAGCATCGTGGCAGAGAATGCAAGCGT
TTCTGCTTGATCTCAATGAAGCTATCTGGAGGCAATGTAAGCATCATTTTTTCTATGTAA
CCATGATCAGAATCTATCTATGCCATTTGATTGCGATTCAGATAACCAGAAACACTCACA
TCAGCATGCATGTACCCATGTTCATACAATGTCAGGCTGGAGACATATACTTATATCTTT
CATGTACACCATGATTTACACTGTAATAAAATCACCAACT

clustalw multiple alignements is not computed in this case
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)