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Oryza sativa
cluster # 4189 cluster # 4189       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4189#0 length = 990 sequences # 3  

consensusID : consensus_4189#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 990
fasta sequence
                              [GCCGCTCAACTAACTAGCAATGTCTATGATCTTGATTCTTCTCCCATGGATGCACATTTTTCTCCAGCACATAAGGTGACTCAGATGATGATACTGTTGTGTTATCACCTGGTGCTGTGAATTTCAGTTCAGCACATGACACTGGCAATGTATTTCCACCCAACCTAACTAAAGTTTTAGGAACATGTGGGGAACAAACGATAGGAGAATAGATCCTACTACTACTAGTACACCCAGTTTCACGCGGTCCACTCAGGACCCGTGAATCTCGCGTTCGACTTGATGGTTCTCCCGGATGACGTGATCATTGGCATCGGCTCCAGCTTTGCCCAGACGAGCGGCACTACTCCCATCAATGTGTGCTTGGTGAGGAGCTTCCGGAGCTTCTTTGCGTGGCACTTGAGCTTCTTCTTCATAGTCATTCCATCCTCAGCTGCCGGTAAGGGTAGTTCCTTCCTATATTCCCACTTGCTCATTGTGGCAATTCCAAGTAGTTCATGAGCAATCCTTCGGACACTGTGCTGACTTCCATGGTGTTTTTTCTGCAGATCGTCTTGAAGCCGTTGCATCGCGATCCTCACTTCCTCCTCATCTTTTTCCCTCAATGATTGGAACAGAAAATTGTCGACGTATTCAAGAATGTTGCTTGCCATCCTCCAGTGCCCGGC-ACCAAGTGAGCAAGCAGATATTGCTCCTTGAGTTCCTTGAGGTCCTTGGGCTTGGGCTTGGGCTTGTTGGGTACATCAGCTGGAGCTAGTGGAGCTGTTGCTGTTGCTGGTGACGACGGGTGACGGTACTTGTCCCGAATGTTCTGCACCCTTGAAATCTCATGCATGATGTCCAGCCGGGCTTTTTCCTTGGTCTCCAGCAGATTTGGATTGATCACGATGAAGCCAGGTACAGAGTCGTCGGCGGAGGCTTGTTCGATCTTGGATAGGATGAGAGGCGCCTCCGCTGGAGGAAGGTATGGCACAATGAACACTCTAAGAG]

[+] EMBL AU225151             [GCCGCTCAACTAACTAGCAATGTCTATGATCTTGATTCTTCTCCCATGGATGCACATTTTTCTCCAGCACATAAGGTGACTCAGATGATGATACTGTTGTGTTATCACCTGGTGCTGTGAATTTCAGTTCAGCACATGACACTGGCAATGTATTTCCACCCAACCTAACTAAAGTTTTAGGAACATGTGGGGAACAAACGATAGGAGAATAGATCCTACTACTACTAGTACACCCAGTTTCACGCGGTCCACTCAGGACCCGTGAATCTCGCGTTCGACTTGATGGTTCTCCCGGATGACGTGATCATTGGCATCGGCTCCAGCTTTGCCCAGACGAGCGGCACTACTCCCATCAATGTGTGCTTGGTGAGGAGCTTCCGGAGCTTCTTTGCGTGGCACTTGAGCTTCTTCTTCATAGTCATTCCATCCTCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL AK121579             [           AACTAGCAATGTCTATGATCTTGATTCTTCTCCCATGGATGCACATTTTTCTCCAGCACATAAGGTGACTCAGATGATGATACTGTTGTGTTATCACCTGGTGCTGTGAATTTCAGTTCAGCACATGACACTGGCAATGTATTTCCACCCAACCTAACTAAAGTTTTAGGAACATGTGGGGAACAAACGATAGGAGAATAGATCCTACTACTACTAGTACACCCAGTTTCACGCGGTCCACTCAGGACCCGTGAATCTCGCGTTCGACTTGATGGTTCTCCCGGATGACGTGATCATTGGCATCGGCTCCAGCTTTGCCCAGACGAGCGGCACTACTCCCATCAATGTGTGCTTGGTGAGGAGCTTCCGGAGCTTCTTTGCGTGGCACTTGAGCTTCTTCTTCATAGTCATTCCATCCTCAGCTGCCGGTAAGGGTAGTTCCTTCCTATATTCCCACTTGCTCATTGTGGCAATTCCAAGTAGTTCATGAGCAATCCTTCGGACACTGTGCTGACTTCCATGGTGTTTTTTCTGCAGATCGTCTTGAAGCCGTTGCATCGCGATCCTCACTTCCTCCTCATCTTTTTCCCTCAATGATTGGAACAGAAAATTGTCGACGTATTCAAGAATGTTGCTTGCCATCCTCCAGTGCCCGGC ACCAAGTGAGCAAGCAGATATTGCTCCTTGAGTTCCTTGAGGTCCTTGGGCTTGGGCTTGGGCTTGTTGGGTACATCAGCTGGAGCTAGTGGAGCTGTTGCTGTTGCTGGTGACGACGGGTGACGGTACTTGTCCCGAATGTTCTGCACCCTTGAAATCTCATGCATGATGTCCAGCCGGGCTTTTTCCTTGGTCTCCAGCAGATTTGGATTGATCACGATGAAGCCAGGTACAGAGTCGTCGGCGGAGGCTTGTTCGATCTTGGATAGGATGAGAGGCGCCTCCGCTGGAGGAAGGTATGGCACAATGAACACTCTAAGA ]
[-] EMBL CF324661             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       CCTCAATGATTGGAACAGAAAATTGTCGACGTATTCAAGAATGTTGCTTGCCATCCTCCAGTGCCCGGCAACCAAGTGAGCAAGCAGATATTGCTCCTTGAGTTCCTTGAGGTCCTTGGGCTTGGGCTTGGGCTTGTTGGGTACATCAGCTGGAGCTAGTGGAGCTGTTGCTGTTGCTGGTGACGACGGGTGACGGTACTTGTCCCGAATGTTCTGCACCCTTGAAATCTCATGCATGATGTCCAGCCGGGCTTTTTCCTTGGTCTCCAGCAGATTTGGATTGATCACGATGAAGCCAGGTACAGAGTCGTCGGCGGAGGCTTGTTCGATCTTGGATAGGATGAGAGGCGCCTCCGCTGGAGGAAGGTATGGCACAATGAACACTCTAAGAG]


>consensus_4189#0 GCCGCTCAACTAACTAGCAATGTCTATGATCTTGATTCTTCTCCCATGGATGCACATTTT TCTCCAGCACATAAGGTGACTCAGATGATGATACTGTTGTGTTATCACCTGGTGCTGTGA ATTTCAGTTCAGCACATGACACTGGCAATGTATTTCCACCCAACCTAACTAAAGTTTTAG GAACATGTGGGGAACAAACGATAGGAGAATAGATCCTACTACTACTAGTACACCCAGTTT CACGCGGTCCACTCAGGACCCGTGAATCTCGCGTTCGACTTGATGGTTCTCCCGGATGAC GTGATCATTGGCATCGGCTCCAGCTTTGCCCAGACGAGCGGCACTACTCCCATCAATGTG TGCTTGGTGAGGAGCTTCCGGAGCTTCTTTGCGTGGCACTTGAGCTTCTTCTTCATAGTC ATTCCATCCTCAGCTGCCGGTAAGGGTAGTTCCTTCCTATATTCCCACTTGCTCATTGTG GCAATTCCAAGTAGTTCATGAGCAATCCTTCGGACACTGTGCTGACTTCCATGGTGTTTT TTCTGCAGATCGTCTTGAAGCCGTTGCATCGCGATCCTCACTTCCTCCTCATCTTTTTCC CTCAATGATTGGAACAGAAAATTGTCGACGTATTCAAGAATGTTGCTTGCCATCCTCCAG TGCCCGGCACCAAGTGAGCAAGCAGATATTGCTCCTTGAGTTCCTTGAGGTCCTTGGGCT TGGGCTTGGGCTTGTTGGGTACATCAGCTGGAGCTAGTGGAGCTGTTGCTGTTGCTGGTG ACGACGGGTGACGGTACTTGTCCCGAATGTTCTGCACCCTTGAAATCTCATGCATGATGT CCAGCCGGGCTTTTTCCTTGGTCTCCAGCAGATTTGGATTGATCACGATGAAGCCAGGTA CAGAGTCGTCGGCGGAGGCTTGTTCGATCTTGGATAGGATGAGAGGCGCCTCCGCTGGAG GAAGGTATGGCACAATGAACACTCTAAGAG



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)