Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 4206 cluster # 4206       Sequences # 3       consensus # 1

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4206#0 length = 1588 sequences # 3  
consensusID : consensus_4206#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1588
fasta sequence 
                              [GCGGAGGGGGTAGCTGGGCGAGGTCTTGGGGGGTGATTTTTGCGGAGAAATTCTGTTGTTGTTGGATGCAAGGAGGGGCCATGTCGGCGGCGGCGACGGCGACGGCGAGCGAGGCGGCGGCGTACGGCGGCGTGGGCATGAGCAAGAGCGGGGCCCTGCAGCCTCAGCCGCCGCACGGCGCCGCCGCCGCGGTGCGCCTCGCCTACACCCACGACGGCATCGCGGTGTACAAGCACACGCCGCCGCCGCCGGTGTACCAGACGCCGGCCGCCGTCGCCGCCCCGTCGCCGCCCGTCCGCGGCAATGGCGGTGCGCCCGCGTCCGCCGAGCAGCACAAGCGCAAGCGCGGCCGACCGCGCAAGTACGCCGTCACGGACGTGCCGCTCGCCGTCGTGCCACCCTCGCCGCGAAAGGCTGCGGCCGCCGCCGGCGCCAGCGCCGCCCAGTCTCCGGCGACGCCCACGCTGCCGCCGGGCTTCTCGTCGGGCCTGGCCGCGTACGGAGGCGCCGCGGCGAGCCAGCCGGCGCCACGTCAGGCTCCGCCGGCATCCGGGCGCGTGCTACCTCACAAGAAGAGGGGCCGGCCGCCGGGCTCCGGCAACAAACAGCAGCAGCGGCCTCAGCACAAGAAGGCAGCAGCTCCAGGATCTAGTGTGATTGGATTGAAGCCTAGCGTCATCACAGTGCAAGTTGGAGAGGGTGTAGTGTCCAGGGTGATGTCCTTTACTAAGAATGGATGGGCTGTTTGTGTTCTCCCAGCTAATGGTGCTGTATCCAACATGACACTGCGTCAAGCAGGTTCTTCTGGTGCAACAACAGTAAATTATGAGGGCCATTTTGAGATTCTTTCTTTGTCTGGCTCATATCTGCTGTCAGAAAGTGTTGGCCTGAGCAGTCGAGCTGGGGGACTTAGTGTTTCACTTGCTGGTCCTGACGGACGTGTTTTAGGTGGCGGAGTAGCAGGACCTCTGAATGCAGCTACACCTGTTCAGGTGGTCATTGGAAGCTTTCTGGCTGATGTGAAGAAGGGGCACAAACAGGCCATGCCGAGTGGGGCTCCGTATCCAGGTGTGAGCACTCCAACATCCAGAGGGACTCCCAGTGGATCCTCAGGTGGGCCTGGTAGCCCCCTAAACCAAAGTGCAAGTGGCTCATTTAACACCAGCAACCAACAAGCCTTGGCTGACTTCCCATGGAGATGAGCTTGGTGGTTCTGATGATCTTTCAGCCTTCAGCTAAAGTCATTGGTGGTTCTGATGAGGGGATTGGGGTTTGTAGCTATTGGACCTCAAGAGGTAAACATAATTTGGTGGTTTCGGCTGTCGCTTCGTTTATTAGACAGGTTGTTATCTCTCAAGT-TTA-GGTGCTGAAAATGTCAGCTCTTAGTTTAGGTGCTCCTAGACACCTA-G-TGTTCA-GA-GAAA-TCAGCTTGAAAGGAAAAGCTGAGAAAAAAATTTGTTGGCTTCAATGCA-CCCCTGGATGTCATGTGGTTAAGTGACCATGTCGAAATGTGT-GGTGCTGTTTTAAGGTACACCTGTTCTTATTACTCTTTGTTTAGTGAGGGAATGCTGCATGGTTGCTTATGCAAAAA]

[+] EMBL AK121658             [GCGGAGGGGGTAGCTGGGCGAGGTCTTGGGGGGTGATTTTTGCGGAGAAATTCTGTTGTTGTTGGATGCAAGGAGGGGCCATGTCGGCGGCGGCGACGGCGACGGCGAGCGAGGCGGCGGCGTACGGCGGCGTGGGCATGAGCAAGAGCGGGGCCCTGCAGCCTCAGCCGCCGCACGGCGCCGCCGCCGCGGTGCGCCTCGCCTACACCCACGACGGCATCGCGGTGTACAAGCACACGCCGCCGCCGCCGGTGTACCAGACGCCGGCCGCCGTCGCCGCCCCGTCGCCGCCCGTCCGCGGCAATGGCGGTGCGCCCGCGTCCGCCGAGCAGCACAAGCGCAAGCGCGGCCGACCGCGCAAGTACGCCGTCACGGACGTGCCGCTCGCCGTCGTGCCACCCTCGCCGCGAAAGGCTGCGGCCGCCGCCGGCGCCAGCGCCGCCCAGTCTCCGGCGACGCCCACGCTGCCGCCGGGCTTCTCGTCGGGCCTGGCCGCGTACGGAGGCGCCGCGGCGAGCCAGCCGGCGCCACGTCAGGCTCCGCCGGCATCCGGGCGCGTGCTACCTCACAAGAAGAGGGGCCGGCCGCCGGGCTCCGGCAACAAACAGCAGCAGCGGCCTCAGCACAAGAAGGCAGCAGCTCCAGGATCTAGTGTGATTGGATTGAAGCCTAGCGTCATCACAGTGCAAGTTGGAGAGGGTGTAGTGTCCAGGGTGATGTCCTTTACTAAGAATGGATGGGCTGTTTGTGTTCTCCCAGCTAATGGTGCTGTATCCAACATGACACTGCGTCAAGCAGGTTCTTCTGGTGCAACAACAGTAAATTATGAGGGCCATTTTGAGATTCTTTCTTTGTCTGGCTCATATCTGCTGTCAGAAAGTGTTGGCCTGAGCAGTCGAGCTGGGGGACTTAGTGTTTCACTTGCTGGTCCTGACGGACGTGTTTTAGGTGGCGGAGTAGCAGGACCTCTGAATGCAGCTACACCTGTTCAGGTGGTCATTGGAAGCTTTCTGGCTGATGTGAAGAAGGGGCACAAACAGGCCATGCCGAGTGGGGCTCCGTATCCAGGTGTGAGCACTCCAACATCCAGAGGGACTCCCAGTGGATCCTCAGGTGGGCCTGGTAGCCCCCTAAACCAAAGTGCAAGTGGCTCATTTAACACCAGCAACCAACAAGCCTTGGCTGACTTCCCATGGAGATGAGCTTGGTGGTTCTGATGATCTTTCAGCCTTCAGCTAAAGTCATTGGTGGTTCTGATGAGGGGATTGGGGTTTGTAGCTATTGGGCCTCAAGAGGTAAACATAATTTGGTGGTTTCGGCTGTCGCTTCGTTTATTAGACAGGTTGTTATCTCTCAAGT TTA GGTGCTGAAAATGTCAGCTCTTAGTTTAGGTGCTCCTAGACACCTA G TGTTCA GA GAAA TCAGCTTGAAAGGAAAAGCTGAGAAAAAAATTTGTTGGCTTCAATGCA CCCCTGGATGTCATGTGGTTAAGTTACCATGTCGAAATGTGT GGTGCTGTTTTAAGGTACACCTGTTCTTATTACTCTTTGTTTAGTGAGGGAATGCTGCATGGTTGCT          ]
[+] EMBL CA765571             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    TTTACTTGCTGGTCCTGACGGACGTGTTTTAGGTGGCGGAGTAGCAGGACCTCTGAATGCAGCTACACCTGTTCAGGTGGTCATTGGAAGCTTTCTGGCTGATGTGAAGAAGGGGCACAAACAGGCCATGCCGAGTGGGGCTCCGTATCCAGGTGTGAGCACTCCAACATCCAGAGGGACTCCCAGTGGATCCTCAGGTGGGCCTGGTAGCCCCCTAGACCAAAGTGCAAGTGGCTCATTTAACACCAGCAACCAACAAGCCTTGGCTGACTTCCCATGGAGATGAGCTTGGTGGTTCTGATGATCTTTCAGCCTTCAGCTAAAGTCATTGGTGGTTCTGATGAGGGGATTGGGGTTTGTAGCTATTGGACCTCAAGAGGTAAACATAATTTGGTGGTTTCGGCTGTCGCTTCGTTTATTAGACAGGTTGTTATCTCTCAAGT TTA GGTGCTGAAAATGTCAGCTCTTAGTTTAGGTGCTCCTAGACACCTA G TGTTCA GA GAAA TCAGCTTGAAAGGAAAAGCTGAGAAAAAGATTTGTTGGCTTCAATGCA CCCCTGGATGTCATGTGGTTAAGTGACCATGTCGAAATGTGTGGGTGCTGTTTTAAGGTACACCTGT                                                     ]
[+] EMBL BI802889             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ATGAGGGGATTGGGGTTTGTAGCTATTGGACCTCAAGAGGTAAACATAATTTGGTGGTTTCGGCTGTCGCTTCGTTTATTAGACAGGTTGTTATCTCTCAAGTCTTACGGTGCTGAAAATGTCAGCTCTTAGTTTAGGTGCTCCTAGACACCTACGCTGTTCACGACGAAACTCAGCTTGAAAGGAAAAGCTGAGAAAAAAATTTGTTGGCTTCAATGCACCCCCTGGATGTCATGTGGTTAAGTGACCATGTCGAAATGTGT GGTGCTGTTTTAAGGTACACCTGTTCTTATTACTCTTTGTTTAGTGAGGGAATGCTACATGGTTGCTTATGCAAAAA]




>consensus_4206#0
GCGGAGGGGGTAGCTGGGCGAGGTCTTGGGGGGTGATTTTTGCGGAGAAATTCTGTTGTT
GTTGGATGCAAGGAGGGGCCATGTCGGCGGCGGCGACGGCGACGGCGAGCGAGGCGGCGG
CGTACGGCGGCGTGGGCATGAGCAAGAGCGGGGCCCTGCAGCCTCAGCCGCCGCACGGCG
CCGCCGCCGCGGTGCGCCTCGCCTACACCCACGACGGCATCGCGGTGTACAAGCACACGC
CGCCGCCGCCGGTGTACCAGACGCCGGCCGCCGTCGCCGCCCCGTCGCCGCCCGTCCGCG
GCAATGGCGGTGCGCCCGCGTCCGCCGAGCAGCACAAGCGCAAGCGCGGCCGACCGCGCA
AGTACGCCGTCACGGACGTGCCGCTCGCCGTCGTGCCACCCTCGCCGCGAAAGGCTGCGG
CCGCCGCCGGCGCCAGCGCCGCCCAGTCTCCGGCGACGCCCACGCTGCCGCCGGGCTTCT
CGTCGGGCCTGGCCGCGTACGGAGGCGCCGCGGCGAGCCAGCCGGCGCCACGTCAGGCTC
CGCCGGCATCCGGGCGCGTGCTACCTCACAAGAAGAGGGGCCGGCCGCCGGGCTCCGGCA
ACAAACAGCAGCAGCGGCCTCAGCACAAGAAGGCAGCAGCTCCAGGATCTAGTGTGATTG
GATTGAAGCCTAGCGTCATCACAGTGCAAGTTGGAGAGGGTGTAGTGTCCAGGGTGATGT
CCTTTACTAAGAATGGATGGGCTGTTTGTGTTCTCCCAGCTAATGGTGCTGTATCCAACA
TGACACTGCGTCAAGCAGGTTCTTCTGGTGCAACAACAGTAAATTATGAGGGCCATTTTG
AGATTCTTTCTTTGTCTGGCTCATATCTGCTGTCAGAAAGTGTTGGCCTGAGCAGTCGAG
CTGGGGGACTTAGTGTTTCACTTGCTGGTCCTGACGGACGTGTTTTAGGTGGCGGAGTAG
CAGGACCTCTGAATGCAGCTACACCTGTTCAGGTGGTCATTGGAAGCTTTCTGGCTGATG
TGAAGAAGGGGCACAAACAGGCCATGCCGAGTGGGGCTCCGTATCCAGGTGTGAGCACTC
CAACATCCAGAGGGACTCCCAGTGGATCCTCAGGTGGGCCTGGTAGCCCCCTAAACCAAA
GTGCAAGTGGCTCATTTAACACCAGCAACCAACAAGCCTTGGCTGACTTCCCATGGAGAT
GAGCTTGGTGGTTCTGATGATCTTTCAGCCTTCAGCTAAAGTCATTGGTGGTTCTGATGA
GGGGATTGGGGTTTGTAGCTATTGGACCTCAAGAGGTAAACATAATTTGGTGGTTTCGGC
TGTCGCTTCGTTTATTAGACAGGTTGTTATCTCTCAAGTTTAGGTGCTGAAAATGTCAGC
TCTTAGTTTAGGTGCTCCTAGACACCTAGTGTTCAGAGAAATCAGCTTGAAAGGAAAAGC
TGAGAAAAAAATTTGTTGGCTTCAATGCACCCCTGGATGTCATGTGGTTAAGTGACCATG
TCGAAATGTGTGGTGCTGTTTTAAGGTACACCTGTTCTTATTACTCTTTGTTTAGTGAGG
GAATGCTGCATGGTTGCTTATGCAAAAA

clustalw multiple alignements is not computed in this case
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)