These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_421#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1133 fasta sequence [ATACTCCAGTATAGGTTTCTAACTCTGCGTCGCACGCAGCAAGGGCCGAAGGCCGCATCTTCGCCGTCCCCAACTCCTTCCACCGCGACTTCGCCGCCGTCCACGGTCCGCCCTCGCCGCCGTCGATGGCCGATCCCTACCGCGCTTACGCCCCTCCCTCCTCTCTCGGCCGAGATCCGCAGGGTGATTTTCCTAGGCATCCTCCATCCGAGGGCTCTTATTATGCTTCAAGAATGGCTGCTCTCCATGGAACATCAGATATACTTAGACATGATGTACCATTACAGCCAAGAGCTTATGGTTTGGATGGTGCAGCAGGAGCAAGTCATCCTGCTTTGGCTGGTCTTGGTGGACTGGCTGCTGGAACTACAGCTCGGGGGCCTAGTCCACTGGAAGACCCAGCTTTAGTAAGGAGAAGTTCTTCTCTAGGAAAAACTGCTAGTATTCCAGATGTTGAGCATCCCAGACCCCTTCTGAACCTTGATGGTCCAAGAGAAGATGAATCCAACATTCTCTTTGTTGATGGTCTCCCTACTGATTGCACAAGGAGAGAAGTGGCCCGTATCCTTCCTACTTAGTGTTCTTATGCTCTGTGTTTATATCTCTTTCTTAGTTTCCTTTCGTGAGCCTTAACTTCCCATGGAAGATTTGTTCCGTCCTTTTGTTGGCTTCAAGGACATCAGACTAGTGCATAAGGAGCCAAGACATAGTAGTGATAGGGCCTATGTTCTATGCTTTGTGGAGTTCAGTGATGCAAAATGTGCAATAACTGCTATGGAGGCTCTCCAAGAATACCGCTTCGACGAGAGGAAACCCGACGCCGCTGTTCTTAATATCAAGTTTGCAAGGTTCCCTTTCCGGCCGGCCGCTGCCCCCCATGATGATCGGAGACGCCTTACCTTGCACTGATTAGTTCCTAACTTCCTATCATCCTTAGTTAGCTGTGCCCAACCTGACCTTATCATTGCAACTTGTAAATCTTGTACCATCTCTGTCCCATAATACAAGGGATTTAGCTCAATCCTTTATATTCTGTGATGGAGGTAGTAACAACCTGTTGTCAGTCGAAACTGGCTAGCAGGAATCTTGAACAGCAGCAAAACAAGGAATGTACATTTGTGGGTTCGAAACAC] [+] EMBL AK059790 [ATACTCCAGTATAGGTTTCTAACTCTGCGTCGCACGCAGCAAGGGCCGAAGGCCGCATCTTCGCCGTCCCCAACTCCTTCCACCGCGACTTCGCCGCCGTCCACGGTCCGCCCTCGCCGCCGTCGATGGCCGATCCCTACCGCGCTTACGCCCCTCCCTCCTCTCTCGGCCGAGATCCGCAGGGTGATTTTCCTAGGCATCCTCCATCCGAGGGCTCTTATTATGCTTCAAGAATGGCTGCTCTCCATGGAACATCAGATATACTTAGACATGATGTACCATTACAGCCAAGAGCTTATGGTTTGGATGGTGCAGCAGGAGCAAGTCATCCTGCTTTGGCTGGTCTTGGTGGACTGGCTGCTGGAACTACAGCTCGGGGGCCTAGTCCACTGGAAGACCCAGCTTTAGTAAGGAGAAGTTCTTCTCTAGGAAAAACTGCTAGTATTCCAGATGTTGAGCATCCCAGACCCCTTCTGAACCTTGATGGTCCAAGAGAAGATGAATCCAACATTCTCTTTGTTGATGGTCTCCCTACTGATTGCACAAGGAGAGAAGTGGCCCGTATCCTTCCTACTTAGTGTTCTTATGCTCTGTGTTTATATCTCTTTCTTAGTTTCCTTTCGTGAGCCTTAACTTCCCATGGAAGATTTGTTCCGTCCTTTTGTTGGCTTCAAGGACATCAGACTAGTGCATAAGGAGCCAAGACATAGTAGTGATAGGGCCTATGTTCTATGCTTTGTGGAGTTCAGTGATGCAAAATGTGCAATAACTGCTATGGAGGCTCTCCAAGAATACCGCTTCGACGAGAGGAAACCCGACGCCGCTGTTCTTAATATCAAGTTTGCAAGGTTCCCTTTCCGGCCGGCCGCTGCCCCCCATGATGATCGGAGACGCCTTACCTTGCACTGATTAGTTCCTAACTTCCTATCATCCTTAGTTAGCTGTGCCCAACCTGACCTTATCATTGCAACTTGTAAATCTTGTACCATCTCTGTCCCATAATACAAGGGATTTAGCTCAATCCTTTATATTCTGTGATGGAGGTAGTAACAACCTGTTGTCAGTCGAAACTGGCTAGCAGGAATCTTGAACAGCAGCAAAACAAGGAATGTACATTTGTGGGTTCGAAACAC] consensusID : consensus_421#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 804 fasta sequence [TAGGGCCTATGTTCTATGCTTTGTGGAGTTCAGTGATGCAAAATGTGCAATAACTGCTATGGAGGCTCTCCAAGGTTATTCCGGTGTCATTGATTTATCGCATTGATATTCTCTTGACAGCTTTTCATATATCCTGGCAGAGTCGGTTTGCTAGTATGGGATTATAATCATGTTACATTACATATAGAATTGAATGGTGTCTTGATAATTGATATGCATGGTATCCATTGGCTTTTTTTCTTTCAGTAGTATTTCACAGTTCACAGTGTCTGTTAGATTCTTGTGACACACTGATACTAACCATATCTTCCTTCAAGAGCTGTAGCTATTTAAACAATAAGGCAGACAGTTCGCTCATATTTCATAGCAAACCTAAGGATAGTAGGAATCAACTTTAAACCTAAGGCTGTAACATGAGCTTTTCTTTGTTGCATAAGCTGAATTTTTCAGATTATTGATTTTGCAGAATACCGCTTCGACGAGAGGAAACCCGACGCCGCTGTTCTTAATATCAAGTTTGCAAGGTTCCCTTTCCGGCCGGCCGCTGCCCCCCATGATGATCGGAGACGCCTTACCTTGCACTGATTAGTTCCTAACTTCCTATCATCCTTAGTTAGCTGTGCCCAACCTGACCTTATCATTGCAACTTGTAAATCTTGTACCATCTCTGTCCCATAATACAAGGGATTTAGCTCAATCCTTTATATTCTGTGATGGAGGTAGTAACAACCTGTTGTCAGTCGAAACTGGCTAGCAGGAATCTTGAACAGCAGCAAAACAAGGAATGTACATTTGTGGGTTCGA] [-] EMBL CB650436 [TAGGGCCTATGTTCTATGCTTTGTGGAGTTCAGTGATGCAAAATGTGCAATAACTGCTATGGAGGCTCTCCAAGGTTATTCCGGTGTCATTGATTTATCGCATTGATATTCTCTTGACAGCTTTTCATATATCCTGGCAGAGTCGGTTTGCTAGTATGGGATTATAATCATGTTACATTACATATAGAATTGAATGGTGTCTTGATAATTGATATGCATGGTATCCATTGGCTTTTTTTCTTTCAGTAGTATTTCACAGTTCACAGTGTCTGTTAGATTCTTGTGACACACTGATACTAACCATATCTTCCTTCAAGAGCTGTAGCTATTTAAACAATAAGGCAGACAGTTCGCTCATATTTCATAGCAAACCTAAGGATAGTAGGAATCAACTTTAAACCTAAGGCTGTAACATGAGCTTTTCTTTGTTGCATAAGCTGAATTTTTCAGATTATTGATTTTGCAGAATACCGCTTCGACGAGAGGAAACCCGACGCCGCTGTTCTTAATATCAAGTTTGCAAGGTTCCCTTTCCGGCCGGCCGCTGCCCCCCATGATGATCGGAGACGCCTTACCTTGCACTGATTAGTTCCTAACTTCCTATCATCCTTAGTTAGCTGTGCCCAACCTGACCTTATCATTGCAACTTGTAAATCTTGTACCATCTCTGTCCCATAATACAAGGGATTTAGCTCAATCCTTTATATTCTGTGATGGAGGTAGTAACAACCTGTTGTCAGTCGAAACTGGCTAGCAGGAATCTTGAACAGCAGCAAAACAAGGAATGTACATTTGTGGGTTCGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_421#0 ATACTCCAGTATAGGTTTCTAACTCTGCGTCGCACGCAGCAAGGGCCGAAGGCCGCATCT 60 consensus_421#1 ------------------------------------------------------------ consensus_421#0 TCGCCGTCCCCAACTCCTTCCACCGCGACTTCGCCGCCGTCCACGGTCCGCCCTCGCCGC 120 consensus_421#1 ------------------------------------------------------------ consensus_421#0 CGTCGATGGCCGATCCCTACCGCGCTTACGCCCCTCCCTCCTCTCTCGGCCGAGATCCGC 180 consensus_421#1 ------------------------------------------------------------ consensus_421#0 AGGGTGATTTTCCTAGGCATCCTCCATCCGAGGGCTCTTATTATGCTTCAAGAATGGCTG 240 consensus_421#1 ------------------------------------------------------------ consensus_421#0 CTCTCCATGGAACATCAGATATACTTAGACATGATGTACCATTACAGCCAAGAGCTTATG 300 consensus_421#1 ------------------------------------------------------------ consensus_421#0 GTTTGGATGGTGCAGCAGGAGCAAGTCATCCTGCTTTGGCTGGTCTTGGTGGACTGGCTG 360 consensus_421#1 ---------------TAGGGCCTATGTTCTATGCTTTGTGGAGT-TCAGTGATGCAAAAT 44 *** * * ******* ** * *** consensus_421#0 CTGGAACTACAGCTCGGGGGCCTAGTCCACTGGAAGACCCAGCTTTAGTAAGGAGAAGTT 420 consensus_421#1 GTGCAATAACTGCTATGGAGGCTCTCCAA--GGTTATTCCGGTGTCATTGATTTA----T 98 ** ** ** *** ** * ** * * ** ** * * * * * * consensus_421#0 CTTCTCTAGGAAAAACTGCTAGTATTCCAGATGTTGAGCATCCCAGACCCCTTCTGAACC 480 consensus_421#1 CGCATTGATATTCTCTTGACAGCTTTTCATATAT----CCTGGCAGAGTCGGTTTGCTAG 154 * * * ** ** ** ** ** * * * **** * * ** consensus_421#0 TTGATGGTCCAAGAGAAGATGAATCCAACATTCTCTTTGTTGATGGTCTCCCTACTGATT 540 consensus_421#1 TATGGGATTATAATCATGTTACATTACATATAGAATTGAATGGTG-TCTTGATAATTGAT 213 * * * * * * * ** * ** ** ** ** *** ** * * consensus_421#0 GCACAAGGAGAGAAGTGGCCCGTATCCTTCCTACTTAGTGTTCTTATGCTCTGTGTTTAT 600 consensus_421#1 ATGCATGGTATCCATTGGCTTTTTTTCTTTCAGTAGTATTTCACAGTTCACAGTGTCTGT 273 ** ** * **** * * *** * * * * * * **** * * consensus_421#0 ATCTCTTTCTTAGTTTCCTTTCGTGAGCCTTAACTTCCCATGGAAGATTTGTTCCGTCCT 660 consensus_421#1 TAGATTCTTGTGACACACTGATACTAACCATATCTTCCTTCAAGAGCTGTAGCTATTTAA 333 * * * ** * ** ** ***** ** * * * consensus_421#0 TTTGTTGGCTTCAAGGACATCAGACTAGTGCATAAGGAGCCAAGACATAGTAGTGATAGG 720 consensus_421#1 ACAATAAGGCAGACAGTTCGCTCA-TATTTCATAGCAAACCTAAGGATAGTAGGAATCAA 392 * * * * * * ** * **** * ** * ******* ** consensus_421#0 GCCTATGTTCTATGCTTTGTGGAG-----TTCAGTGATGCAAAATGTGCAATAACTGCTA 775 consensus_421#1 CTTTAAACCTAAGGCTGTAACATGAGCTTTTCTTTGTTGCATAAGCTG-AATTTTTCAGA 451 ** * *** * * *** ** **** ** ** *** * * consensus_421#0 TGGAGGCTCTCCAAGAATACCGCTTCGACGAGAGGAAACCCGACGCCGCTGTTCTTAATA 835 consensus_421#1 TTATTGATTTTGCAGAATACCGCTTCGACGAGAGGAAACCCGACGCCGCTGTTCTTAATA 511 * * * * *********************************************** consensus_421#0 TCAAGTTTGCAAGGTTCCCTTTCCGGCCGGCCGCTGCCCCCCATGATGATCGGAGACGCC 895 consensus_421#1 TCAAGTTTGCAAGGTTCCCTTTCCGGCCGGCCGCTGCCCCCCATGATGATCGGAGACGCC 571 ************************************************************ consensus_421#0 TTACCTTGCACTGATTAGTTCCTAACTTCCTATCATCCTTAGTTAGCTGTGCCCAACCTG 955 consensus_421#1 TTACCTTGCACTGATTAGTTCCTAACTTCCTATCATCCTTAGTTAGCTGTGCCCAACCTG 631 ************************************************************ consensus_421#0 ACCTTATCATTGCAACTTGTAAATCTTGTACCATCTCTGTCCCATAATACAAGGGATTTA 1015 consensus_421#1 ACCTTATCATTGCAACTTGTAAATCTTGTACCATCTCTGTCCCATAATACAAGGGATTTA 691 ************************************************************ consensus_421#0 GCTCAATCCTTTATATTCTGTGATGGAGGTAGTAACAACCTGTTGTCAGTCGAAACTGGC 1075 consensus_421#1 GCTCAATCCTTTATATTCTGTGATGGAGGTAGTAACAACCTGTTGTCAGTCGAAACTGGC 751 ************************************************************ consensus_421#0 TAGCAGGAATCTTGAACAGCAGCAAAACAAGGAATGTACATTTGTGGGTTCGAAACAC 1133 consensus_421#1 TAGCAGGAATCTTGAACAGCAGCAAAACAAGGAATGTACATTTGTGGGTTCGA----- 804 ***************************************************** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||