These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4298#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 793 fasta sequence [AAGCCCACCAACCTCTGCGTCCCCGTCGCCGGCGACCACCACCATGTGCGCCGCCGCCGCCGCAGCCGCCACCGCGGGGATCATCTCACCGCCTACACCTAGTCTCCTCTGGGCGAACACCAGGGCCACCTTCGTCTCCTTCCCGCGGCGATCGCCTCCCACGACCTCCCTCCTCTCGGCCTCCTCCGCCCCGGCCCCCGCCCCGCCGTCGGCCAACCCCAAGTACCACAACGCGAAGGTGAACGCGGGCGACGAGGAGGTGGACGGGGAGGAGCTGCTTCAGCGGTTCAGGCGGGAGGTGGCCCGTGCGGGAGTCATGGAGGAGATCAGGTGGCGGCGGAGGCACGAGGACGCCCGGGACAAGCGCAAGCGCAAGGCCCGCTCCGCCGCCCGGAGGTTTCGCCGGAGGCATTTCAAGGGTCCGTACCCATTTGGTGACGAGCAGGAACCAAAGGAGGGGATCATGGAGGATGATAAGCATGACAATTGGGAGCTTCCTGGAGGAGAGCTCCCTTCTTACAGATGAACCGATAAATGACATTGATGTTCTTTTGGAGCTCGCTTCTTACAGATGAACTTAAAAATGGCACTGATGTTTTCTGTCTGAC-GAAGGGTTTCGATTCTTCAACT-TC-AGTTCCTCTTTCTTCTTCAGCAGTAGAGTGAAC-TTACCCAACACAACCCTAGTTGATCTGTGACCAATATTTAGTGAACTTGCATTTCTAGGTGTAAGGTATAGTTGTTATGTGGCAAAATAC-CTAGTCTGAACCGATTCCTCTGTTGTGTGTTAATTGCC] [+] EMBL AK110693 [AAGCCCACCAACCTCTGCGTCCCCGTCGCCGGCGACCACCACCATGTGCGCCGCCGCCGCCGCAGCCGCCACCGCGGGGATCATCTCACCGCCTACACCTAGTCTCCTCTGGGCGAACACCAGGGCCACCTTCGTCTCCTTCCCGCGGCGATCGCCTCCCACGACCTCCCTCCTCTCGGCCTCCTCCGCCCCGGCCCCCGCCCCGCCGTCGGCCAACCCCAAGTACCACAACGCGAAGGTGAACGCGGGCGACGAGGAGGTGGACGGGGAGGAGCTGCTTCAGCGGTTCAGGCGGGAGGTGGCCCGTGCGGGAGTCATGGAGGAGATCAGGTGGCGGCGGAGGCACGAGGACGCCCGGGACAAGCGCAAGCGCAAGGCCCGCTCCGCCGCCCGGAGGTTTCGCCGGAGGCATTTCAAGGGTCCGTACCCATTTGGTGACGAGCAGGAACCAAAGGAGGGGATCATGGAGGATGATAAGCATGACAATTGGGAGCTTCCTGGAGGAGAGCTCCCTTCTTACAGATGAACCGATAAATGACATTGATGTTCTTTTGGAGCTCGCTTCTTACAGATGAACTTAAAAATGGCACTGATGTTTTCTGTCTGAC GAAGGGTTTCGATTCTTCAACT TC AGTTCCTCTTTCTTCTTCAGCAGTAGAGTGAAC TTACCCAACACAACCCTAGTTGATCTGTGACCAATATTTAGTGAACTTGCATTTCTAGGTGTAAGGTATAGTTGTTATGTGGCAAAATAC CTAGTCTGAACCGATTCCTCTGTTGTGTGTTAATTGCC] [+] EMBL BI796649 [ TTCTGTCTGACAGAAGGATTTCGATGCTTCAACTCTCAAGTTCCTCTTTCTTCTTCAGCAGTAGAGTGAACATTACCCAACACAACCCTAGTTGATCTGTGACCAATATTTAGTGAACTTGCATTTCTATGTGTAAGGTATAGTTGTTATGTGGCAAAATACACTAGTCTGAACCGATTCCTCTGTTGTGTG ] consensusID : consensus_4298#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 617 fasta sequence [GGGAGGAGCTGCTNCAGCGGNTANGCGGCAGGNGGCCCGCGCGGCAGTCGTGGNGGAGATCAGGTGGCGGCGGAGGCACGANGACGCCCGNCACAANCGCAAGCGCAAGGCCCGCTCCGCCGCCCGNNGGTTNCNCCGGNGGCATTTNAAGGGNCCGNNCCCATTTGNTGACGANCAGNAACCANNGGAGGNGATCATGGAGGATGATAAGCATGACAANTGGNAGCTTCCTGNAGGAGAGCTCCCTTCTTACAGNTGAACCGNNNAATGACATNGATGTTNTTTTGNAGCTCGCTTCTTACAGNTGAACTTAAAAATGGCNCTGATGTTNTCTGTCTGACGAAGGATTNCGATGCTNCAACTTCAGNTCCTCTTTCTTCTTCANCAGNAGAGTGAACTTACCCAACACAACCCTAGTTGATCTGNGACCAANATTTANTGAACTNGCATTTCTATGAGTAAGGNATAGTTGTTATGAGGCAAAATACCTANTCTGAACCGANTCCTCTGCTGTGNGNTAATTGCCAANTNGCTNCATGAGCCTNNGCCTTNTTCTCTGCTNAACTTCTGATNCTGCTAGTGCTGCTGGTGACTTACAANTTGCAGCGAAGNGATGN] [+] EMBL CA766160 [GGGAGGAGCTGCTNCAGCGGNTANGCGGCAGGNGGCCCGCGCGGCAGTCGTGGNGGAGATCAGGTGGCGGCGGAGGCACGANGACGCCCGNCACAANCGCAAGCGCAAGGCCCGCTCCGCCGCCCGNNGGTTNCNCCGGNGGCATTTNAAGGGNCCGNNCCCATTTGNTGACGANCAGNAACCANNGGAGGNGATCATGGAGGATGATAAGCATGACAANTGGNAGCTTCCTGNAGGAGAGCTCCCTTCTTACAGNTGAACCGNNNAATGACATNGATGTTNTTTTGNAGCTCGCTTCTTACAGNTGAACTTAAAAATGGCNCTGATGTTNTCTGTCTGACGAAGGATTNCGATGCTNCAACTTCAGNTCCTCTTTCTTCTTCANCAGNAGAGTGAACTTACCCAACACAACCCTAGTTGATCTGNGACCAANATTTANTGAACTNGCATTTCTATGAGTAAGGNATAGTTGTTATGAGGCAAAATACCTANTCTGAACCGANTCCTCTGCTGTGNGNTAATTGCCAANTNGCTNCATGAGCCTNNGCCTTNTTCTCTGCTNAACTTCTGATNCTGCTAGTGCTGCTGGTGACTTACAANTTGCAGCGAAGNGATGN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4298#0 AAGCCCACCAACCTCTGCGTCCCCGTCGCCGGCGACCACCACCATGTGCGCCGCCGCCGC 60 consensus_4298#1 ------------------------------------------------------------ consensus_4298#0 CGCAGCCGCCACCGCGGGGATCATCTCACCGCCTACACCTAGTCTCCTCTGGGCGAACAC 120 consensus_4298#1 ------------------------------------------------------------ consensus_4298#0 CAGGGCCACCTTCGTCTCCTTCCCGCGGCGATCGCCTCCCACGACCTCCCTCCTCTCGGC 180 consensus_4298#1 ------------------------------------------------------------ consensus_4298#0 CTCCTCCGCCCCGGCCCCCGCCCCGCCGTCGGCCAACCCCAAGTACCACAACGCGAAGGT 240 consensus_4298#1 ------------------------------------------------------------ consensus_4298#0 GAACGCGGGCGACGAGGAGGTGGACGGGGAGGAGCTGCTTCAGCGGTTCAGGCGGGAGGT 300 consensus_4298#1 --------------------------GGGAGGAGCTGCTNCAGCGGNT-ANGCGGCAGGN 33 ************* ****** * * **** *** consensus_4298#0 GGCCCGTGCGGGAGTCATGGAGGAGATCAGGTGGCGGCGGAGGCACGAGGACGCCCGGGA 360 consensus_4298#1 GGCCCGCGCGGCAGTCGTGGNGGAGATCAGGTGGCGGCGGAGGCACGANGACGCCCGNCA 93 ****** **** **** *** *************************** ******** * consensus_4298#0 CAAGCGCAAGCGCAAGGCCCGCTCCGCCGCCCGGAGGTTTCGCCGGAGGCATTTCAAGGG 420 consensus_4298#1 CAANCGCAAGCGCAAGGCCCGCTCCGCCGCCCGNNGGTTNCNCCGGNGGCATTTNAAGGG 153 *** ***************************** **** * **** ******* ***** consensus_4298#0 TCCGTACCCATTTGGTGACGAGCAGGAACCAAAGGAGGGGATCATGGAGGATGATAAGCA 480 consensus_4298#1 NCCGNNCCCATTTGNTGACGANCAGNAACCANNGGAGGNGATCATGGAGGATGATAAGCA 213 *** ******** ****** *** ***** ***** ********************* consensus_4298#0 TGACAATTGGGAGCTTCCTGGAGGAGAGCTCCCTTCTTACAGATGAACCGATAAATGACA 540 consensus_4298#1 TGACAANTGGNAGCTTCCTGNAGGAGAGCTCCCTTCTTACAGNTGAACCGNNNAATGACA 273 ****** *** ********* ********************* ******* ******* consensus_4298#0 TTGATGTTCTTTTGGAGCTCGCTTCTTACAGATGAACTTAAAAATGGCACTGATGTTTTC 600 consensus_4298#1 TNGATGTTNTTTTGNAGCTCGCTTCTTACAGNTGAACTTAAAAATGGCNCTGATGTTNTC 333 * ****** ***** **************** **************** ******** ** consensus_4298#0 TGTCTGACGAAGGGTTTCGATTCTTCAACTTCAGTTCCTCTTTCTTCTTCAGCAGTAGAG 660 consensus_4298#1 TGTCTGACGAAGGATTNCGATGCTNCAACTTCAGNTCCTCTTTCTTCTTCANCAGNAGAG 393 ************* ** **** ** ********* **************** *** **** consensus_4298#0 TGAACTTACCCAACACAACCCTAGTTGATCTGTGACCAATATTTAGTGAACTTGCATTTC 720 consensus_4298#1 TGAACTTACCCAACACAACCCTAGTTGATCTGNGACCAANATTTANTGAACTNGCATTTC 453 ******************************** ****** ***** ****** ******* consensus_4298#0 TAGGTGTAAGGTATAGTTGTTATGTGGCAAAATACCTAGTCTGAACCGATTCCTCTGTTG 780 consensus_4298#1 TATGAGTAAGGNATAGTTGTTATGAGGCAAAATACCTANTCTGAACCGANTCCTCTGCTG 513 ** * ****** ************ ************* ********** ******* ** consensus_4298#0 TGTGTTAATTGCC----------------------------------------------- 793 consensus_4298#1 TGNGNTAATTGCCAANTNGCTNCATGAGCCTNNGCCTTNTTCTCTGCTNAACTTCTGATN 573 ** * ******** consensus_4298#0 -------------------------------------------- consensus_4298#1 CTGCTAGTGCTGCTGGTGACTTACAANTTGCAGCGAAGNGATGN 617 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||