These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_432#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1109 fasta sequence [ACAGATACAGAAGCAGGCGCTGCTGCTAGAGGCGAAGGATATAACAAGCGGCGGCCGGAGACGACGACGGAGAAATCCGGAAGAAGAGGAACTGCCGGCGCTGAGCTGCAATCGCGCCCAAGAATCCATCTCCTCCGGCGGCAGCTTACAGGGTCGCTGCTCCATCTCCTTGAATTGTACTAGCTGTCTTGTGCTTAAGATTTGCGCTCGGCTTCATTTTTGGATTCAAGCTGCTGGGTGTGGATTTTTATGATGGGCTGTCTACCAACAAAGCAAGTGGGTCGTTCAACACATTCCTTGAATCCACGGGAAGCTGTGGCTCTTGCGGCTGAAACATCTTTTACTGTGAATGAAGTTGAGGCATTATACGATCTCTTCAGGAAATTAAGTAATTCAATAATTAAAGATGGTCTGATTCACAAGGAAGAATTCCATCTTGCTCTCTTTAGGAACAAGAAGACAAATCTCTTCGTTGATAGGGTCTTTGATTTGTTTGATCAAAAAGGAAATGGTGTCATCGAATTTGATGAATTTGTTCGATCTCTTAGTGTGTTTCATCCAGATGCACCTGAGGAACAGAAAGCTGGATTTGCATTTAAGTTATATGACCTAAGACAGACAGGGTTTATTGAAAGGCATGAGTTAAAGGAGATGGTGTTGGCTCTTCTGGATGAATCAGATTTGAATATTACAAGTGATGCTGTCGAGATGATTGTTGATAGGACATTTGACCAGGCTGACACAAAAGGCGATGAGAGAATAGACCAGGAGGAGTGGAATGAGTTTGTCAAAAATAATCCATATGTGCTGAGGAATATGACCCTCCCATACCTCAAGGACCTCACCATGGTATTCCCAAGTTTTGTGATTCACTCAGAAGTCAGCGAAGCAGACATGGTTGCCTAACCTGAAACCTGGTGTTGCTACTTGCTAGATTGCAAGTTTGCAACACTTCTAGCATGTAATGTTTGTTCCTTGCGTGCATTGTTGACTAGGGAAACAGCCATATAGGAGATGAGTTGATGCCTCAAAATGTAGCATCACTGACCAGCAGATGCTCACTGTTGAGATTATGGGCATATAATGATTTAATTTATTCCATAAATAAA] [+] EMBL AK111570 [ACAGATACAGAAGCAGGCGCTGCTGCTAGAGGCGAAGGATATAACAAGCGGCGGCCGGAGACGACGACGGAGAAATCCGGAAGAAGAGGAACTGCCGGCGCTGAGCTGCAATCGCGCCCAAGAATCCATCTCCTCCGGCGGCAGCTTACAGGGTCGCTGCTCCATCTCCTTGAATTGTACTAGCTGTCTTGTGCTTAAGATTTGCGCTCGGCTTCATTTTTGGATTCAAGCTGCTGGGTGTGGATTTTTATGATGGGCTGTCTACCAACAAAGCAAGTGGGTCGTTCAACACATTCCTTGAATCCACGGGAAGCTGTGGCTCTTGCGGCTGAAACATCTTTTACTGTGAATGAAGTTGAGGCATTATACGATCTCTTCAGGAAATTAAGTAATTCAATAATTAAAGATGGTCTGATTCACAAGGAAGAATTCCATCTTGCTCTCTTTAGGAACAAGAAGACAAATCTCTTCGTTGATAGGGTCTTTGATTTGTTTGATCAAAAAGGAAATGGTGTCATCGAATTTGATGAATTTGTTCGATCTCTTAGTGTGTTTCATCCAGATGCACCTGAGGAACAGAAAGCTGGATTTGCATTTAAGTTATATGACCTAAGACAGACAGGGTTTATTGAAAGGCATGAGTTAAAGGAGATGGTGTTGGCTCTTCTGGATGAATCAGATTTGAATATTACAAGTGATGCTGTCGAGATGATTGTTGATAGGACATTTGACCAGGCTGACACAAAAGGCGATGAGAGAATAGACCAGGAGGAGTGGAATGAGTTTGTCAAAAATAATCCATATGTGCTGAGGAATATGACCCTCCCATACCTCAAGGACCTCACCATGGTATTCCCAAGTTTTGTGATTCACTCAGAAGTCAGCGAAGCAGACATGGTTGCCTAACCTGAAACCTGGTGTTGCTACTTGCTAGATTGCAAGTTTGCAACACTTCTAGCATGTAATGTTTGTTCCTTGCGTGCATTGTTGACTAGGGAAACAGCCATATAGGAGATGAGTTGATGCCTCAAAATGTAGCATCACTGACCAGCAGATGCTCACTGTTGAGATTATGGGCATATAATGATTTAATTTATTCCATAAATAAA] consensusID : consensus_432#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 692 fasta sequence [GACAGACAGGGTTTATTGAAAGGCATGAGTTAAAGGAGATGGTGTTGGCTCTTCTGGATGAATCAGATTTGAATATTACAAGTGATGCTGTCGAGATGATTGTTGATAGGACATTTGACCAGGCTGACACAAAAGGCGATGAGAGAATAGACCAGGAGGAGTGGAATGAGTTTGTCAAAAATAATCCATATGTGCTGAGGAATATGACCCTCCCATACCTCAAGGACCTCACCATGGTATTCCCAAGTTTTGTGATTCACTCAGAAGTCAGCGAAGCAGACATGGTTGCCTAACCTGAAACCTGGTGTTGCTACTTGCTAGATTGCAAGTTTGCAACACTTCTAGCATGTAATGTTTGTTCCTTGCGTGCATTGTTGACTAGGGAAACAGCCATATAGGAGATGAGTTGATGCCTCAAAATGTAGCATCACTGACCAGCAGATGCTCACACCTGTACAGCACACAGTAAGCTTTCACAAGAAAGCCTTTTTCCCCCTTTGTGTTAGATATAGTACAGCCATGGAAGGTGTTGGGTGCGGCTTTGCATGACAAGTGAACAGTTTTTCAAGGCCATCAATGGAAGTGAGGGTAATCACAGTTGAAGGCTCACAGTAATTTCGTAGCAACTTCACATGGCTTAGATATTGTATTTCATCAATTTGATCTCAAGTATTTCATACAAAAAAAAAAAA] [-] EMBL CA759698 [GACAGACAGGGTTTATTGAAAGGCATGAGTTAAAGGAGATGGTGTTGGCTCTTCTGGATGAATCAGATTTGAATATTACAAGTGATGCTGTCGAGATGATTGTTGATAGGACATTTGACCAGGCTGACACAAAAGGCGATGAGAGAATAGACCAGGAGGAGTGGAATGAGTTTGTCAAAAATAATCCATATGTGCTGAGGAATATGACCCTCCCATACCTCAAGGACCTCACCATGGTATTCCCAAGTTTTGTGATTCACTCAGAAGTCAGCGAAGCAGACATGGTTGCCTAACCTGAAACCTGGTGTTGCTACTTGCTAGATTGCAAGTTTGCAACACTTCTAGCATGTAATGTTTGTTCCTTGCGTGCATTGTTGACTAGGGAAACAGCCATATAGGAGATGAGTTGATGCCTCAAAATGTAGCATCACTGACCAGCAGATGCTCACACCTGTACAGCACACAGTAAGCTTTCACAAGAAAGCCTTTTTCCCCCTTTGTGTTAGATATAGTACAGCCATGGAAGGTGTTGGGTGCGGCTTTGCATGACAAGTGAACAGTTTTTCAAGGCCATCAATGGAAGTGAGGGTAATCACAGTTGAAGGCTCACAGTAATTTCGTAGCAACTTCACATGGCTTAGATATTGTATTTCATCAATTTGATCTCAAGTATTTCATACAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_432#0 ACAGATACAGAAGCAGGCGCTGCTGCTAGAGGCGAAGGATATAACAAGCGGCGGCCGGAG 60 consensus_432#1 ------------------------------------------------------------ consensus_432#0 ACGACGACGGAGAAATCCGGAAGAAGAGGAACTGCCGGCGCTGAGCTGCAATCGCGCCCA 120 consensus_432#1 ------------------------------------------------------------ consensus_432#0 AGAATCCATCTCCTCCGGCGGCAGCTTACAGGGTCGCTGCTCCATCTCCTTGAATTGTAC 180 consensus_432#1 ------------------------------------------------------------ consensus_432#0 TAGCTGTCTTGTGCTTAAGATTTGCGCTCGGCTTCATTTTTGGATTCAAGCTGCTGGGTG 240 consensus_432#1 ------------------------------------------------------------ consensus_432#0 TGGATTTTTATGATGGGCTGTCTACCAACAAAGCAAGTGGGTCGTTCAACACATTCCTTG 300 consensus_432#1 ------------------------------------------------------------ consensus_432#0 AATCCACGGGAAGCTGTGGCTCTTGCGGCTGAAACATCTTTTACTGTGAATGAAGTTGAG 360 consensus_432#1 ------------------------------------------------------------ consensus_432#0 GCATTATACGATCTCTTCAGGAAATTAAGTAATTCAATAATTAAAGATGGTCTGATTCAC 420 consensus_432#1 ------------------------------------------------------------ consensus_432#0 AAGGAAGAATTCCATCTTGCTCTCTTTAGGAACAAGAAGACAAATCTCTTCGTTGATAGG 480 consensus_432#1 ------------------------------------------------------------ consensus_432#0 GTCTTTGATTTGTTTGATCAAAAAGGAAATGGTGTCATCGAATTTGATGAATTTGTTCGA 540 consensus_432#1 ------------------------------------------------------------ consensus_432#0 TCTCTTAGTGTGTTTCATCCAGATGCACCTGAGGAACAGAAAGCTGGATTTGCATTTAAG 600 consensus_432#1 ------------------------------------------------------------ consensus_432#0 TTATATGACCTAAGACAGACAGGGTTTATTGAAAGGCATGAGTTAAAGGAGATGGTGTTG 660 consensus_432#1 -------------GACAGACAGGGTTTATTGAAAGGCATGAGTTAAAGGAGATGGTGTTG 47 *********************************************** consensus_432#0 GCTCTTCTGGATGAATCAGATTTGAATATTACAAGTGATGCTGTCGAGATGATTGTTGAT 720 consensus_432#1 GCTCTTCTGGATGAATCAGATTTGAATATTACAAGTGATGCTGTCGAGATGATTGTTGAT 107 ************************************************************ consensus_432#0 AGGACATTTGACCAGGCTGACACAAAAGGCGATGAGAGAATAGACCAGGAGGAGTGGAAT 780 consensus_432#1 AGGACATTTGACCAGGCTGACACAAAAGGCGATGAGAGAATAGACCAGGAGGAGTGGAAT 167 ************************************************************ consensus_432#0 GAGTTTGTCAAAAATAATCCATATGTGCTGAGGAATATGACCCTCCCATACCTCAAGGAC 840 consensus_432#1 GAGTTTGTCAAAAATAATCCATATGTGCTGAGGAATATGACCCTCCCATACCTCAAGGAC 227 ************************************************************ consensus_432#0 CTCACCATGGTATTCCCAAGTTTTGTGATTCACTCAGAAGTCAGCGAAGCAGACATGGTT 900 consensus_432#1 CTCACCATGGTATTCCCAAGTTTTGTGATTCACTCAGAAGTCAGCGAAGCAGACATGGTT 287 ************************************************************ consensus_432#0 GCCTAACCTGAAACCTGGTGTTGCTACTTGCTAGATTGCAAGTTTGCAACACTTCTAGCA 960 consensus_432#1 GCCTAACCTGAAACCTGGTGTTGCTACTTGCTAGATTGCAAGTTTGCAACACTTCTAGCA 347 ************************************************************ consensus_432#0 TGTAATGTTTGTTCCTTGCGTGCATTGTTGACTAGGGAAACAGCCATATAGGAGATGAGT 1020 consensus_432#1 TGTAATGTTTGTTCCTTGCGTGCATTGTTGACTAGGGAAACAGCCATATAGGAGATGAGT 407 ************************************************************ consensus_432#0 TGATGCCTCAAAATGTAGCATCACTGACCAGCAGATGCTCAC---TGTTGAGATTATGGG 1077 consensus_432#1 TGATGCCTCAAAATGTAGCATCACTGACCAGCAGATGCTCACACCTGTACAGCACACAGT 467 ****************************************** *** ** * * consensus_432#0 -------CATATAATGATTTAATTTATTCCATAAATAAA--------------------- 1109 consensus_432#1 AAGCTTTCACAAGAAAGCCTTTTTCCCCCTTTGTGTTAGATATAGTACAGCCATGGAAGG 527 ** * * * ** * * * * consensus_432#0 ------------------------------------------------------------ consensus_432#1 TGTTGGGTGCGGCTTTGCATGACAAGTGAACAGTTTTTCAAGGCCATCAATGGAAGTGAG 587 consensus_432#0 ------------------------------------------------------------ consensus_432#1 GGTAATCACAGTTGAAGGCTCACAGTAATTTCGTAGCAACTTCACATGGCTTAGATATTG 647 consensus_432#0 --------------------------------------------- consensus_432#1 TATTTCATCAATTTGATCTCAAGTATTTCATACAAAAAAAAAAAA 692 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||