These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4324#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 879 fasta sequence [CCATGGCGACATCAGAAGACACTCTTGTTTAGTCCGATTGGGAATATTAAACGAGTCCTCTTCAGGGGGTCTAAATCCAGATTCTGTACCTAGTTGGTGGTTGCGCACTCACTCACTCACTCACTCTCAGTCAGCTAAGCTCCACTGGTAATCTCTTCTTGCGGGCTCTCCTCTCCAGAGTATTACCCAGTTCAGTAATTAATTCGTGAGTTGCTCAATGGAAGTTATTCTAGTCATCTCACTCGTTTTGCTTCTTGTACTAGGAGCCATCTTTGTTATTCCAAAATCCAACAACAATGGTAAAGGGAAGGAAATACAATCACCAAACGGTGGAATGAAATTTAGGAGCTATACAAAGAAAGAGGTATCGACTCACAACACAAGGAAGGATTGTTGGATCATAGTCAAGGACAAGGTGTACGACGTAACCTCTTATGTGGAGGAACATCCAGGTGGTGATGAAATTCTAAACAATGCCGGTGGTGATTCAACAGAGGGATTTTTGGGACCGCAACATGGCTTTAGAGTCTTCGAGATCATCGAAGATTTCTGCATCGGCAAACTGAAGGACTGATGATGATAGAGATGAGAGGCTCANGAATCTCCCAAATGTGAACCCTTGCGTTCAACGGATGTTCCTTGAAGGAATGAAACTGTCTCCTGCCTGTGATGAAGACTGGCCCCAGCTCCTGTGNGTCTCATTTCATCTTTGACCTGGCACTCTTACANNTAGCCAGTGTTGGGACCATATGGACTATATTTATTGTGAGTTCAATCTTATGTTTNTCGTCGATTATCGATATGTTTCCTTAAATTATGGAACTTTCTCANATAGACACGAAATGTGCCACTTTTGGATTTATTGGTTCTACTACAATG] [+] EMBL CA758924 [CCATGGCGACATCAGAAGACACTCTTGTTTAGTCCGATTGGGAATATTAAACGAGTCCTCTTCAGGGGGTCTAAATCCAGATTCTGTACCTAGTTGGTGGTTGCGCACTCACTCACTCACTCACTCTCAGTCAGCTAAGCTCCACTGGTAATCTCTTCTTGCGGGCTCTCCTCTCCAGAGTATTACCCAGTTCAGTAATTAATTCGTGAGTTGCTCAATGGAAGTTATTCTAGTCATCTCACTCGTTTTGCTTCTTGTACTAGGAGCCATCTTTGTTATTCCAAAATCCAACAACAATGGTAAAGGGAAGGAAATACAATCACCAAACGGTGGAATGAAATTTAGGAGCTATACAAAGAAAGAGGTATCGACTCACAACACAAGGAAGGATTGTTGGATCATAGTCAAGGACAAGGTGTACGACGTAACCTCTTATGTGGAGGAACATCCAGGTGGTGATGAAATTCTAAACAATGCCGGTGGTGATTCAACAGAGGGATTTTTGGGACCGCAACATGGCTTTAGAGTCTTCGAGATCATCGAAGATTTCTGCATCGGCAAACTGAAGGACTGATGATGATAGAGATGAGAGGCTCANGAATCTCCCAAATGTGAACCCTTGCGTTCAACGGATGTTCCTTGAAGGAATGAAACTGTCTCCTGCCTGTGATGAAGACTGGCCCCAGCTCCTGTGNGTCTCATTTCATCTTTGACCTGGCACTCTTACANNTAGCCAGTGTTGGGACCATATGGACTATATTTATTGTGAGTTCAATCTTATGTTTNTCGTCGATTATCGATATGTTTCCTTAAATTATGGAACTTTCTCANATAGACACGAAATGTGCCACTTTTGGATTTATTGGTTCTACTACAATG] consensusID : consensus_4324#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 471 fasta sequence [CAATGCCGGTGGTGATTCAACAGAGGGATTTTTGGGACCGCAACATGGCTTTAGAGTCTTCGAGATCATCGAAGATTTCTGCATCGGCAAACTGAAGGACTGATGATGATAGAGATGAGAGGCTCAGGAATCTCCCAAATGTGAACCCTTGCGTTCCACGGATGTTCCTTGAAGGAATGAAACTGTCTCCTGCCTGTGATGAGGACTGGCCCCAAGCTCTGTGGTTCTCATTTCATCTTTGACCTGGCACTCTTACTAGTAGCAGTGTTTGGACCATATGGACTATATTTATGTGAGTTCAATCTCAATG-TTTCGTCGATTTATCTCTTTGAAAAGATATGTTTCCTTAGATTTATGGAACTTTCTCAGATAAGACAACG-AATGTGCCAACTTTTGTATTTATTGTTTCTACTACAATGACAATGATATGCATTTTTTACTTGGTCCAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU101529 [CAATGCCGGTGGTGATTCAACAGAGGGATTTTTGGGACCGCAACATGGCTTTAGAGTCTTCGAGATCATCGAAGATTTCTGCATCGGCAAACTGAAGGACTGATGATGATAGAGATGAGAGGCTCAGGAATCTCCCAAATGTGAACCCTTGCGTTCCACGGATGTTCCTTGAAGGAATGAAACTGTCTCCTGCCTGTGATGAGGACTGGCCCCAAGCTCTGTGGTTCTCATTTCATCTTTGACCTGGCACTCTTACTAGTAGCAGTGTTTGGACCATATGGACTATATTTATGTGAGTTCAATCTCAATG TTTCGTCGATTTATCTCTTTGAAAAGATATGTTTCCTTAGATTTATGGAACTTTCTCAGATAAGACAACG AATGTGCCAACTTTTGTATTTATTGTTTCTACTACAATGACAATGATATGCATTTTTTACTT ] [+] EMBL AU101530 [ AGAGGGATTTTTGGGACCGCAACNTGGCTTTAGAGTCTTCGAGATCATCGAAGATTTCTGCATCGGCAAACTGAAGGACTGATGATGATAGAGATGAGAGGCTCAGGAATCTCCCAAATGTGAACCCTTGCGTTCCACGGATGTTCCTTGAAGGAATGAAACTGTCTCCTGCCTGTGATGAGGACTGGCCCCAAGCTCTGTGGTTCTCATTTCATCTTTGACCTGGCACTCTTACTAGTAGCAGTGTTTGGACCATATGGACTATATTTATGTGAGTTCAATCTCAATGTTTTCGTCGATTTATCTCTTTGAAAAGATATGTTTCCTTAGATTTATGGAACTTTCTCAGATAAGACAACGAAATGTGCCAACTTTTGTATTTATTGTTTCTACTACAATGACAATGATATGCATTTTTTACTTGGTCCAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4324#0 CCATGGCGACATCAGAAGACACTCTTGTTTAGTCCGATTGGGAATATTAAACGAGTCCTC 60 consensus_4324#1 ------------------------------------------------------------ consensus_4324#0 TTCAGGGGGTCTAAATCCAGATTCTGTACCTAGTTGGTGGTTGCGCACTCACTCACTCAC 120 consensus_4324#1 ------------------------------------------------------------ consensus_4324#0 TCACTCTCAGTCAGCTAAGCTCCACTGGTAATCTCTTCTTGCGGGCTCTCCTCTCCAGAG 180 consensus_4324#1 ------------------------------------------------------------ consensus_4324#0 TATTACCCAGTTCAGTAATTAATTCGTGAGTTGCTCAATGGAAGTTATTCTAGTCATCTC 240 consensus_4324#1 ------------------------------------------------------------ consensus_4324#0 ACTCGTTTTGCTTCTTGTACTAGGAGCCATCTTTGTTATTCCAAAATCCAACAACAATGG 300 consensus_4324#1 ------------------------------------------------------------ consensus_4324#0 TAAAGGGAAGGAAATACAATCACCAAACGGTGGAATGAAATTTAGGAGCTATACAAAGAA 360 consensus_4324#1 ------------------------------------------------------------ consensus_4324#0 AGAGGTATCGACTCACAACACAAGGAAGGATTGTTGGATCATAGTCAAGGACAAGGTGTA 420 consensus_4324#1 ------------------------------------------------------------ consensus_4324#0 CGACGTAACCTCTTATGTGGAGGAACATCCAGGTGGTGATGAAATTCTAAACAATGCCGG 480 consensus_4324#1 ---------------------------------------------------CAATGCCGG 9 ********* consensus_4324#0 TGGTGATTCAACAGAGGGATTTTTGGGACCGCAACATGGCTTTAGAGTCTTCGAGATCAT 540 consensus_4324#1 TGGTGATTCAACAGAGGGATTTTTGGGACCGCAACATGGCTTTAGAGTCTTCGAGATCAT 69 ************************************************************ consensus_4324#0 CGAAGATTTCTGCATCGGCAAACTGAAGGACTGATGATGATAGAGATGAGAGGCTCANGA 600 consensus_4324#1 CGAAGATTTCTGCATCGGCAAACTGAAGGACTGATGATGATAGAGATGAGAGGCTCAGGA 129 ********************************************************* ** consensus_4324#0 ATCTCCCAAATGTGAACCCTTGCGTTCAACGGATGTTCCTTGAAGGAATGAAACTGTCTC 660 consensus_4324#1 ATCTCCCAAATGTGAACCCTTGCGTTCCACGGATGTTCCTTGAAGGAATGAAACTGTCTC 189 *************************** ******************************** consensus_4324#0 CTGCCTGTGATGAAGACTGGCCCCAGCTCCTGTGNGTCTCATTTCATCTTTGACCTGGCA 720 consensus_4324#1 CTGCCTGTGATGAGGACTGGCCCCAAGCTCTGTGGTTCTCATTTCATCTTTGACCTGGCA 249 ************* *********** ***** ************************ consensus_4324#0 CTCTTACANNTAGCCAGTGTTGGGACCATATGGACTATATTTATTGTGAGTTCAATCTTA 780 consensus_4324#1 CTCTTACTAGTAGC-AGTGTTTGGACCATATGGACTATATTTAT-GTGAGTTCAATCTCA 307 ******* **** ****** ********************** ************* * consensus_4324#0 TGTTTNTCGTCGATT-ATC----------GATATGTTTCCTTAAATT-ATGGAACTTTCT 828 consensus_4324#1 -ATGTTTCGTCGATTTATCTCTTTGAAAAGATATGTTTCCTTAGATTTATGGAACTTTCT 366 * * ********* *** ************** *** ************ consensus_4324#0 CANATA-GACACGAAATGTGCCA-CTTTTGGATTTATTGGTTCTACTACAATG------- 879 consensus_4324#1 CAGATAAGACAACGAATGTGCCAACTTTTGTATTTATTGTTTCTACTACAATGACAATGA 426 ** *** **** ********* ****** ******** ************* consensus_4324#0 --------------------------------------------- consensus_4324#1 TATGCATTTTTTACTTGGTCCAAAAAAAAAAAAAAAAAAAAAAAA 471 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||