These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4325#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1688 fasta sequence [CTCTCCGACCCTCTCGTTCACCGGCGACGGCGGCGCTACGACGGCCGGCGGGCTCCCGTACTCCGCTTCCTCCTCCTCCTCCTCAGTGCGCTGGTGAAATTGATAAGAGGCTGTTGGAACTTGGAAGCTGTATAGTTCAGGTCGTCATGGCTCATCAAAAGCGTGAAGCAACCAGCGACAACGGCGGTGGCGATGAAGAGTGGGCATCAAAACGCCCCAAAGTTGTCGGCGCTGCTGCTGAAAAGGAGCACATTCTGACATCTGACGCTTCGCATGAAACGAATGGCGATGAAGCTCAAGGAGGAGATGCCTCTCGAAAGGAAAACACGGTGTCGACAAACCCGTGTGTTTCAGATGAGAAAGCAGCAACCAACTCGAATGTTTCAAGTGGCCATGGGGTGATTTTGACTAGTGTGGAAGCTGATGCTGCAGAAGACAAGGGTTGCAGGCATACTATGGAAGATGCATGGGTGCTGCTTCCTGATGCTAGCATGGAATCTCCGGGAAACCTGAGGTGCGCTCATTTCGCAATATGTGATGGAC-ATGGTGGT-CGCCTGGCTGCAGAGTATGCACAGAAACATTTGCATCAGAATGTTATTGCAGCAGGATTACCACGTGAGTTGATGGATGTTAAAGCTGCAAAGAAGGCCATCATTGAAGGTTTTCGTAGAACTGATGAGTGCTTACTGCAAGAAAGTACTAAAGGAAACTGGCAAGATGGTGCAACAGCTGTCTGTGTCTGGGTCCTGGGGCAGACGGTGGTTGTTGCAAATGCTGGAGATGCTAAAGCTGTATTAGCTCGTTCCACATCAGCTGATGGTGAAGGTGCAGTGGATGATGCCAAAAGTCAACTGAAGGCTATTGTTTTGACCAGAGAACATAAAGCAATCTTTCCACAAGAACGTGCTCGAATCCAAAAGGCTGGAGGATCTGTTGGCCCTAATGGCAGATTACAAGGTCGCATTGAAGTATCTAGAGCTTTGGGTGATCGTCAGTTTAAGAAGGTTGGGCTGATTGCTACACCAGACGTCCACTCCTTTGAAGTAACGAGAAAAGATCATTTTATTATTCTTGGGTGTGATGGCTTATGGGGAGTATTTGGACCAGGTGATGCTGTTGAATTTGTGCAGAATCAATTGAAGGAGACCTCGTCAGCGACTCTGGCAGTGCGGCGGCTCGTGAAGGAAGCTGTTCGTGAGAGGCGTTGCAAGGACAACTGCACTGCCGTGCTGATCGTCTTCAAGCACCAGAATTCTTTTCACCCACTGCGACCGTTTTCGTTTTTTCACCAAGCTGAACTGGGGAAACGAATCATCTGACAACGAACAATATCTAGTTCTATTGTTACCTTATCCTGCACTGCGACGTTCTGGCCGTGTCTGTATTGTGATCGAGACCCTTGTGCACTGCTGTAGCCGTCTATGTATTGTGATCGAGACCTTTGTGCACTGCTGTAGCTTATGCGGTTATGCCACCTCTGGAATGAATGAAATATTGGAGCCCCTCCACTCCAAAATATAGCTTTATAGTACGAGATCAGATACAACCTAACAACGGATTTGAATAGGTTCTTTGTTCAGATTCGTTGCACTATGGTATGACTAATCCAGTAAATTAGGTTGCTATATTTTGAGATTTTTGAGATGGAGGGAGTATTTTTCTAGATATTGGAGTAATTCCTGGTACTA] [+] EMBL AK064380 [CTCTCCGACCCTCTCGTTCACCGGCGACGGCGGCGCTACGACGGCCGGCGGGCTCCCGTACTCCGCTTCCTCCTCCTCCTCCTCAGTGCGCTGGTGAAATTGATAAGAGGCTGTTGGAACTTGGAAGCTGTATAGTTCAGGTCGTCATGGCTCATCAAAAGCGTGAAGCAACCAGCGACAACGGCGGTGGCGATGAAGAGTGGGCATCAAAACGCCCCAAAGTTGTCGGCGCTGCTGCTGAAAAGGAGCACATTCTGACATCTGACGCTTCGCATGAAACGAATGGCGATGAAGCTCAAGGAGGAGATGCCTCTCGAAAGGAAAACACGGTGTCGACAAACCCGTGTGTTTCAGATGAGAAAGCAGCAACCAACTCGAATGTTTCAAGTGGCCATGGGGTGATTTTGACTAGTGTGGAAGCTGATGCTGCAGAAGACAAGGGTTGCAGGCATACTATGGAAGATGCATGGGTGCTGCTTCCTGATGCTAGCATGGAATCTCCGGGAAACCTGAGGTGCGCTCATTTCGCAATATGTGATGGAC ATGGTGGT CGCCTGGCTGCAGAGTATGCACAGAAACATTTGCATCAGAATGTTATTGCAGCAGGATTACCACGTGAGTTGATGGATGTTAAAGCTGCAAAGAAGGCCATCATTGAAGGTTTTCGTAGAACTGATGAGTGCTTACTGCAAGAAAGTACTAAAGGAAACTGGCAAGATGGTGCAACAGCTGTCTGTGTCTGGGTCCTGGGGCAGACGGTGGTTGTTGCAAATGCTGGAGATGCTAAAGCTGTATTAGCTCGTTCCACATCAGCTGATGGTGAAGGTGCAGTGGATGATGCCAAAAGTCAACTGAAGGCTATTGTTTTGACCAGAGAACATAAAGCAATCTTTCCACAAGAACGTGCTCGAATCCAAAAGGCTGGAGGATCTGTTGGCCCTAATGGCAGATTACAAGGTCGCATTGAAGTATCTAGAGCTTTGGGTGATCGTCAGTTTAAGAAGGTTGGGCTGATTGCTACACCAGACGTCCACTCCTTTGAAGTAACGAGAAAAGATCATTTTATTATTCTTGGGTGTGATGGCTTATGGGGAGTATTTGGACCAGGTGATGCTGTTGAATTTGTGCAGAATCAATTGAAGGAGACCTCGTCAGCGACTCTGGCAGTGCGGCGGCTCGTGAAGGAAGCTGTTCGTGAGAGGCGTTGCAAGGACAACTGCACTGCCGTGCTGATCGTCTTCAAGCACCAGAATTCTTTTCACCCACTGCGACCGTTTTCGTTTTTTCACCAAGCTGAACTGGGGAAACGAATCATCTGACAACGAACAATATCTAGTTCTATTGTTACCTTATCCTGCACTGCGACGTTCTGGCCGTGTCTGTATTGTGATCGAGACCCTTGTGCACTGCTGTAGCCGTCTATGTATTGTGATCGAGACCTTTGTGCACTGCTGTAGCTTATGCGGTTATGCCACCTCTGGAATGAATGAAATATTGGAGCCCCTCCACTCCAAAATATAGCTTTATAGTACGAGATCAGATACAACCTAACAACGGATTTGAATAGGTTCTTTGTTCAGATTCGTTGCACTATGGTATGACTAATCCAGTAAATTAGGTTGCTATATTTTGAGATTTTTGAGATGGAGGGAGTATTTTTCTAGATATTGGAGTAATTCCTGGTACTA] [+] EMBL CF322714 [ GCCGGCGGGCTCCCGTACTCCGCTTCCTCCTCCTCCTCCTCAGTGCGCTGGTGAAATTGATAAGAGGCTGTTGGAACTTGGAAGCTGTATAGTTCAGGTCGTCATGGCTCATCAAAAGCGTGAAGCAACCAGCGACAACGGCGGTGGCGATGAAGAGTGGGCATCAAAACGCCCCAAAGTTGTCGGCGCTGCTGCTGAAAAGGAGCACATTCTGACATCTGACGCTTCGCATGAAACGAATGGCGATGAAGCTCAAGGAGGAGATGCCTCTCGAAAGGAAAACACGGTGTCGACAAACCCGTGTGTTTCAGATGAGAAAGCAGCAACCAACTCGAATGTTTCAAGTGGCCATGGGGTGATTTTGACTAGTGTGGAAGCTGATGCTGCAGAAGACAAGGGTTGCAGGCATACTATGGAAGATGCATGGGTGCTGCTTCCTGATGCTAGCATGGAATCTCCGGGAAACCTGAGGTGCGCTCATTTCGCAATATATGATGGACAATGGTGGTNCGCCTGGCTGCAGAGTATGCACAGAAACATTTGCATCAGAATGTTATTGCAGCAGGATTACCACGTGAGTTGATGGA ] consensusID : consensus_4325#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 610 fasta sequence [GCATTGAAGTATCTAGAGCTTTGGGTGATCGTCAGTTTAAGAAGGTTGGGCTGATTGCTACACCAGACGTCCACTCCTTTGAAGTAACGAGAAAAGATCATTTTATTATTCTTGGGTGTGATGGCTTATGGGGAGTATTTGGACCAGGTGATGCTGTTGAATTTGTGCAGAATCAATTGAAGGAGACCTCGTCAGCGACTCTGGCAGTGCGGCGGCTCGTGAAGGAAGCTGTTCGTGAGAGGCGTTGCAAGGACAACTGCACTGCCGTGCTGATCGTCTTCAAGCACTAGAATTCTTTTCACCCACTGCGACCGTTTTCGTTTTTTCACCAAGCTGAACTGGGGAAACGAATCATCTGACAACGAACAATATCTAGTTCTATTGTTACCTTATCCTGCACTGCGACGTTCTGGCCGTGTCTGTATTGTGATCGAGACCCTTGTGCACTGCTGTAGCCGTGTATGTATTGTGATCGAGACCTTTGTGCACTGCTGTAGCTTATGCGGTTATGCCACCTCTGGAATGAATGAAATATTGGAGCCCCTCCCCTCCAAAATATAGCTTTATAGTACGAGATTAGATCCACCCTAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CA762524 [GCATTGAAGTATCTAGAGCTTTGGGTGATCGTCAGTTTAAGAAGGTTGGGCTGATTGCTACACCAGACGTCCACTCCTTTGAAGTAACGAGAAAAGATCATTTTATTATTCTTGGGTGTGATGGCTTATGGGGAGTATTTGGACCAGGTGATGCTGTTGAATTTGTGCAGAATCAATTGAAGGAGACCTCGTCAGCGACTCTGGCAGTGCGGCGGCTCGTGAAGGAAGCTGTTCGTGAGAGGCGTTGCAAGGACAACTGCACTGCCGTGCTGATCGTCTTCAAGCACTAGAATTCTTTTCACCCACTGCGACCGTTTTCGTTTTTTCACCAAGCTGAACTGGGGAAACGAATCATCTGACAACGAACAATATCTAGTTCTATTGTTACCTTATCCTGCACTGCGACGTTCTGGCCGTGTCTGTATTGTGATCGAGACCCTTGTGCACTGCTGTAGCCGTGTATGTATTGTGATCGAGACCTTTGTGCACTGCTGTAGCTTATGCGGTTATGCCACCTCTGGAATGAATGAAATATTGGAGCCCCTCCCCTCCAAAATATAGCTTTATAGTACGAGATTAGATCCACCCTAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4325#0 CTCTCCGACCCTCTCGTTCACCGGCGACGGCGGCGCTACGACGGCCGGCGGGCTCCCGTA 60 consensus_4325#1 ------------------------------------------------------------ consensus_4325#0 CTCCGCTTCCTCCTCCTCCTCCTCAGTGCGCTGGTGAAATTGATAAGAGGCTGTTGGAAC 120 consensus_4325#1 ------------------------------------------------------------ consensus_4325#0 TTGGAAGCTGTATAGTTCAGGTCGTCATGGCTCATCAAAAGCGTGAAGCAACCAGCGACA 180 consensus_4325#1 ------------------------------------------------------------ consensus_4325#0 ACGGCGGTGGCGATGAAGAGTGGGCATCAAAACGCCCCAAAGTTGTCGGCGCTGCTGCTG 240 consensus_4325#1 ------------------------------------------------------------ consensus_4325#0 AAAAGGAGCACATTCTGACATCTGACGCTTCGCATGAAACGAATGGCGATGAAGCTCAAG 300 consensus_4325#1 ------------------------------------------------------------ consensus_4325#0 GAGGAGATGCCTCTCGAAAGGAAAACACGGTGTCGACAAACCCGTGTGTTTCAGATGAGA 360 consensus_4325#1 ------------------------------------------------------------ consensus_4325#0 AAGCAGCAACCAACTCGAATGTTTCAAGTGGCCATGGGGTGATTTTGACTAGTGTGGAAG 420 consensus_4325#1 ------------------------------------------------------------ consensus_4325#0 CTGATGCTGCAGAAGACAAGGGTTGCAGGCATACTATGGAAGATGCATGGGTGCTGCTTC 480 consensus_4325#1 ------------------------------------------------------------ consensus_4325#0 CTGATGCTAGCATGGAATCTCCGGGAAACCTGAGGTGCGCTCATTTCGCAATATGTGATG 540 consensus_4325#1 ------------------------------------------------------------ consensus_4325#0 GACATGGTGGTCGCCTGGCTGCAGAGTATGCACAGAAACATTTGCATCAGAATGTTATTG 600 consensus_4325#1 ------------------------------------------------------------ consensus_4325#0 CAGCAGGATTACCACGTGAGTTGATGGATGTTAAAGCTGCAAAGAAGGCCATCATTGAAG 660 consensus_4325#1 ------------------------------------------------------------ consensus_4325#0 GTTTTCGTAGAACTGATGAGTGCTTACTGCAAGAAAGTACTAAAGGAAACTGGCAAGATG 720 consensus_4325#1 ------------------------------------------------------------ consensus_4325#0 GTGCAACAGCTGTCTGTGTCTGGGTCCTGGGGCAGACGGTGGTTGTTGCAAATGCTGGAG 780 consensus_4325#1 ------------------------------------------------------------ consensus_4325#0 ATGCTAAAGCTGTATTAGCTCGTTCCACATCAGCTGATGGTGAAGGTGCAGTGGATGATG 840 consensus_4325#1 ------------------------------------------------------------ consensus_4325#0 CCAAAAGTCAACTGAAGGCTATTGTTTTGACCAGAGAACATAAAGCAATCTTTCCACAAG 900 consensus_4325#1 ------------------------------------------------------------ consensus_4325#0 AACGTGCTCGAATCCAAAAGGCTGGAGGATCTGTTGGCCCTAATGGCAGATTACAAGGTC 960 consensus_4325#1 ------------------------------------------------------------ consensus_4325#0 GCATTGAAGTATCTAGAGCTTTGGGTGATCGTCAGTTTAAGAAGGTTGGGCTGATTGCTA 1020 consensus_4325#1 GCATTGAAGTATCTAGAGCTTTGGGTGATCGTCAGTTTAAGAAGGTTGGGCTGATTGCTA 60 ************************************************************ consensus_4325#0 CACCAGACGTCCACTCCTTTGAAGTAACGAGAAAAGATCATTTTATTATTCTTGGGTGTG 1080 consensus_4325#1 CACCAGACGTCCACTCCTTTGAAGTAACGAGAAAAGATCATTTTATTATTCTTGGGTGTG 120 ************************************************************ consensus_4325#0 ATGGCTTATGGGGAGTATTTGGACCAGGTGATGCTGTTGAATTTGTGCAGAATCAATTGA 1140 consensus_4325#1 ATGGCTTATGGGGAGTATTTGGACCAGGTGATGCTGTTGAATTTGTGCAGAATCAATTGA 180 ************************************************************ consensus_4325#0 AGGAGACCTCGTCAGCGACTCTGGCAGTGCGGCGGCTCGTGAAGGAAGCTGTTCGTGAGA 1200 consensus_4325#1 AGGAGACCTCGTCAGCGACTCTGGCAGTGCGGCGGCTCGTGAAGGAAGCTGTTCGTGAGA 240 ************************************************************ consensus_4325#0 GGCGTTGCAAGGACAACTGCACTGCCGTGCTGATCGTCTTCAAGCACCAGAATTCTTTTC 1260 consensus_4325#1 GGCGTTGCAAGGACAACTGCACTGCCGTGCTGATCGTCTTCAAGCACTAGAATTCTTTTC 300 *********************************************** ************ consensus_4325#0 ACCCACTGCGACCGTTTTCGTTTTTTCACCAAGCTGAACTGGGGAAACGAATCATCTGAC 1320 consensus_4325#1 ACCCACTGCGACCGTTTTCGTTTTTTCACCAAGCTGAACTGGGGAAACGAATCATCTGAC 360 ************************************************************ consensus_4325#0 AACGAACAATATCTAGTTCTATTGTTACCTTATCCTGCACTGCGACGTTCTGGCCGTGTC 1380 consensus_4325#1 AACGAACAATATCTAGTTCTATTGTTACCTTATCCTGCACTGCGACGTTCTGGCCGTGTC 420 ************************************************************ consensus_4325#0 TGTATTGTGATCGAGACCCTTGTGCACTGCTGTAGCCGTCTATGTATTGTGATCGAGACC 1440 consensus_4325#1 TGTATTGTGATCGAGACCCTTGTGCACTGCTGTAGCCGTGTATGTATTGTGATCGAGACC 480 *************************************** ******************** consensus_4325#0 TTTGTGCACTGCTGTAGCTTATGCGGTTATGCCACCTCTGGAATGAATGAAATATTGGAG 1500 consensus_4325#1 TTTGTGCACTGCTGTAGCTTATGCGGTTATGCCACCTCTGGAATGAATGAAATATTGGAG 540 ************************************************************ consensus_4325#0 CCCCTCCACTCCAAAATATAGCTTTATAGTACGAGATCAGATACAACCTAACAACGGATT 1560 consensus_4325#1 CCCCTCCCCTCCAAAATATAGCTTTATAGTACGAGATTAGATCCACCCTAAAAAAAAAAA 600 ******* ***************************** **** ** ***** ** * consensus_4325#0 TGAATAGGTTCTTTGTTCAGATTCGTTGCACTATGGTATGACTAATCCAGTAAATTAGGT 1620 consensus_4325#1 AAAAAAAAAA-------------------------------------------------- 610 ** * consensus_4325#0 TGCTATATTTTGAGATTTTTGAGATGGAGGGAGTATTTTTCTAGATATTGGAGTAATTCC 1680 consensus_4325#1 ------------------------------------------------------------ consensus_4325#0 TGGTACTA 1688 consensus_4325#1 -------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||